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The map label for this gene is speE [H]

Identifier: 119773753

GI number: 119773753

Start: 767982

End: 768728

Strand: Direct

Name: speE [H]

Synonym: Sama_0615

Alternate gene names: 119773753

Gene position: 767982-768728 (Clockwise)

Preceding gene: 119773751

Following gene: 119773754

Centisome position: 17.83

GC content: 53.68

Gene sequence:

>747_bases
TTGTCTGAATTTTCGGTTATCTATCAAACTTCCGATGCTATTGGCCCCATCCGGGTGCTCGACAATGGCGAGTCGCGCAT
TCTTGCCTTTGGCGACAACGATGAGCAAAGCAAGCTCAACAAAAAGACGCCCCACGTGCCCAAACACTCCTATGTGCAGG
TGATGCTGGAGTCGCTGATGTTTGCCAGCCCCAAGAGTGCCATCGTACTGGGCTTGGGGGGCGGCGCCCTGGTACATGCC
CTGCGACGCTTTGACGGTGCGCTTAAGTTGACCGCTGTAGAGCTTAGGGGGGAGGTGATTGATATTGCAAAGAAATATTT
TTATCTCCCCATAGGTAAAAAGCTCAACCTGATTGAGGCCGACGCCGCCGTTTTTGTCAGCGACGCTGACCACAAAAAAG
TCGACATTATTTTTGCTGACCTGTACGGCGCCGATGGTGTCGACGCCAAGCAGCTCACCGACAGCTTTATTCAAGGCTGT
GTCAGACTGCTCAAGCCCGGTGGTATGTTGGTGCTCAACTGCTGGAAAGAACACCGTCAGAGATTTGATGTCCGCGAGCA
ACTGCAGCAACACTTCTGCGACGTGTATGGCAGCCTCAGCAGCGGCGGCAACTGGGTGGTATTTGCCACCTTAACGCCGG
GCGTGCTTAAGGAAGATGGCTTGAAACAAGCCAGGGCCGAATTGTCAGCCAAATTGGAGTTCAATGTTGGCAAGGCTTCG
CTGGGATTTGGCCCCTGGCTGGACTGA

Upstream 100 bases:

>100_bases
TGTCATAATAGCCCTTTGAAAACATCTCGGCAGAAACCCCTATTCTAAAGGGCCACACCGGGACCAGTGAAGGGCCATTC
AGGGGCCGGGATGTAAAATT

Downstream 100 bases:

>100_bases
CGGCCTGGTTAAGCTGACGTTGAAAATTGTAAGTCTCTGTTAACCCGGCGTAAGGTCGGGTTACCCCTCGAATACTCCTT
TGTTATTCTTGCCAGTCCCA

Product: putative spermidine synthase

Products: NA

Alternate protein names: Putrescine aminopropyltransferase; PAPT; SPDSY [H]

Number of amino acids: Translated: 248; Mature: 247

Protein sequence:

>248_residues
MSEFSVIYQTSDAIGPIRVLDNGESRILAFGDNDEQSKLNKKTPHVPKHSYVQVMLESLMFASPKSAIVLGLGGGALVHA
LRRFDGALKLTAVELRGEVIDIAKKYFYLPIGKKLNLIEADAAVFVSDADHKKVDIIFADLYGADGVDAKQLTDSFIQGC
VRLLKPGGMLVLNCWKEHRQRFDVREQLQQHFCDVYGSLSSGGNWVVFATLTPGVLKEDGLKQARAELSAKLEFNVGKAS
LGFGPWLD

Sequences:

>Translated_248_residues
MSEFSVIYQTSDAIGPIRVLDNGESRILAFGDNDEQSKLNKKTPHVPKHSYVQVMLESLMFASPKSAIVLGLGGGALVHA
LRRFDGALKLTAVELRGEVIDIAKKYFYLPIGKKLNLIEADAAVFVSDADHKKVDIIFADLYGADGVDAKQLTDSFIQGC
VRLLKPGGMLVLNCWKEHRQRFDVREQLQQHFCDVYGSLSSGGNWVVFATLTPGVLKEDGLKQARAELSAKLEFNVGKAS
LGFGPWLD
>Mature_247_residues
SEFSVIYQTSDAIGPIRVLDNGESRILAFGDNDEQSKLNKKTPHVPKHSYVQVMLESLMFASPKSAIVLGLGGGALVHAL
RRFDGALKLTAVELRGEVIDIAKKYFYLPIGKKLNLIEADAAVFVSDADHKKVDIIFADLYGADGVDAKQLTDSFIQGCV
RLLKPGGMLVLNCWKEHRQRFDVREQLQQHFCDVYGSLSSGGNWVVFATLTPGVLKEDGLKQARAELSAKLEFNVGKASL
GFGPWLD

Specific function: Catalyzes the production of spermidine from putrescine and decarboxylated S-adenosylmethionine (dcSAM), which serves as an aminopropyl donor [H]

COG id: COG0421

COG function: function code E; Spermidine synthase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the spermidine/spermine synthase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001045 [H]

Pfam domain/function: PF01564 Spermine_synth [H]

EC number: =2.5.1.16 [H]

Molecular weight: Translated: 27241; Mature: 27109

Theoretical pI: Translated: 7.13; Mature: 7.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEFSVIYQTSDAIGPIRVLDNGESRILAFGDNDEQSKLNKKTPHVPKHSYVQVMLESLM
CCCCEEEEECCCCCCCEEEEECCCCEEEEECCCCHHHHHCCCCCCCCCHHHHHHHHHHHH
FASPKSAIVLGLGGGALVHALRRFDGALKLTAVELRGEVIDIAKKYFYLPIGKKLNLIEA
HCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEHHCCHHHHHHHHHEEEECCCCCEEEEC
DAAVFVSDADHKKVDIIFADLYGADGVDAKQLTDSFIQGCVRLLKPGGMLVLNCWKEHRQ
CCEEEEECCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHH
RFDVREQLQQHFCDVYGSLSSGGNWVVFATLTPGVLKEDGLKQARAELSAKLEFNVGKAS
HCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHEEEEEECCCCC
LGFGPWLD
CCCCCCCC
>Mature Secondary Structure 
SEFSVIYQTSDAIGPIRVLDNGESRILAFGDNDEQSKLNKKTPHVPKHSYVQVMLESLM
CCCEEEEECCCCCCCEEEEECCCCEEEEECCCCHHHHHCCCCCCCCCHHHHHHHHHHHH
FASPKSAIVLGLGGGALVHALRRFDGALKLTAVELRGEVIDIAKKYFYLPIGKKLNLIEA
HCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEHHCCHHHHHHHHHEEEECCCCCEEEEC
DAAVFVSDADHKKVDIIFADLYGADGVDAKQLTDSFIQGCVRLLKPGGMLVLNCWKEHRQ
CCEEEEECCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHH
RFDVREQLQQHFCDVYGSLSSGGNWVVFATLTPGVLKEDGLKQARAELSAKLEFNVGKAS
HCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHEEEEEECCCCC
LGFGPWLD
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10761919 [H]