| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is qorA [H]
Identifier: 119773673
GI number: 119773673
Start: 657261
End: 658262
Strand: Direct
Name: qorA [H]
Synonym: Sama_0533
Alternate gene names: 119773673
Gene position: 657261-658262 (Clockwise)
Preceding gene: 119773672
Following gene: 119773674
Centisome position: 15.26
GC content: 59.28
Gene sequence:
>1002_bases ATGACTTCATTCCACACTCAGGTTGTGTTTGATGCCCCCGGTAGCCCCGAGGTTATGAAACTGGTGCAAGGGCCAGCGCC TTCCCCCCAAGTTGGAGAGGTGTTGATTAGGGTAGCCGCCGCCGGCGTTAACGGGCCGGATTTGGCGCAGCGCAAAGGTG CTTATCCACCGCCGCCGGGCGCTTCACCAATTTTGGGCTTGGAAGTGTCCGGCGAGGTGGTTGAGGTTGCCCCCGATGTC AGCTGGCCAAGGATAGGTGACAAGGTCTGCGCCCTGGTGCCCGGCGGTGGTTATGCCGGCTTGGTGGTGACCCCTGCGCT GCACTGTTTGCCCATACCGTTAACTATGTCCCTCGAAGAGGCCGCGGGCCTGCCTGAAACCTTCTTTACCGTGTGGGGCA ATCTCTTTATGCGCGCTGGCCTCAAGGCGGGCGAGACCCTGCTTATCCAGGGTGGCAGCGGTGGCATAGGCTCCACGGCG ATTCTGCTGGCCAGGGCGTTTGGCGCGCGGGTACTGGTGACCTCCGGCAGTGCAGAAAAACGGGAATATTGCGTGAGTCT GGGGGCTGACATGGCCTTTGACTATCGGGATGAGGCGCTGGTTGACCGGGTGCTTGCGGCCACAGACGGCCGGGGTGTGG ATGTCGTGCTGGACATGGCAGGTGGTGCCATGGTCAATAACAATCTGAAAATGCTCGCCAATGATGGCCGTATGGTCTCC GTGGCCATGCAGGCAGGTCCCAGGGCCGAGGTGGATGTGTTTCGCATCATGAGTAAACGCATCCTGTGGACGGGCTCCAC TTTAAGACCCCAGAGTATCGAGGCCAAAGCGGCCATCGCCAAAGAACTGAGGGAGAAGGTTTGGCCGCTGCTCGACAGCG GCCAATGCCGTATACCTCTTTTTGGCGTGTATCGGCTCGATGAAGTGGTTAAAGTCCACAGCATCATGGAGGCAAAATCC CACCACGGAAAGCTGGTGCTCAGTCTCGATGGAATTGCTTGA
Upstream 100 bases:
>100_bases GCGGCTGTATGTTTCAAGTCCCGGTTAAGTTTCGTCTTTTAGCTTTGTCGGAAGCTGCTATGCTTGGGACAACTTTTCTC AGTCTGCGTAATTTTCCTTT
Downstream 100 bases:
>100_bases TATGGCGAAATTTTCGACTAAAGTCGAGATTAAACGGAAAAATGAAAAAAACAGGTTGAAATTAATCTAAATATCACAAA AAAATCGCTTAATTTGGCAT
Product: alcohol dehydrogenase, zinc-containing
Products: NA
Alternate protein names: NADPH:quinone reductase 1; Zeta-crystallin homolog protein [H]
Number of amino acids: Translated: 333; Mature: 332
Protein sequence:
>333_residues MTSFHTQVVFDAPGSPEVMKLVQGPAPSPQVGEVLIRVAAAGVNGPDLAQRKGAYPPPPGASPILGLEVSGEVVEVAPDV SWPRIGDKVCALVPGGGYAGLVVTPALHCLPIPLTMSLEEAAGLPETFFTVWGNLFMRAGLKAGETLLIQGGSGGIGSTA ILLARAFGARVLVTSGSAEKREYCVSLGADMAFDYRDEALVDRVLAATDGRGVDVVLDMAGGAMVNNNLKMLANDGRMVS VAMQAGPRAEVDVFRIMSKRILWTGSTLRPQSIEAKAAIAKELREKVWPLLDSGQCRIPLFGVYRLDEVVKVHSIMEAKS HHGKLVLSLDGIA
Sequences:
>Translated_333_residues MTSFHTQVVFDAPGSPEVMKLVQGPAPSPQVGEVLIRVAAAGVNGPDLAQRKGAYPPPPGASPILGLEVSGEVVEVAPDV SWPRIGDKVCALVPGGGYAGLVVTPALHCLPIPLTMSLEEAAGLPETFFTVWGNLFMRAGLKAGETLLIQGGSGGIGSTA ILLARAFGARVLVTSGSAEKREYCVSLGADMAFDYRDEALVDRVLAATDGRGVDVVLDMAGGAMVNNNLKMLANDGRMVS VAMQAGPRAEVDVFRIMSKRILWTGSTLRPQSIEAKAAIAKELREKVWPLLDSGQCRIPLFGVYRLDEVVKVHSIMEAKS HHGKLVLSLDGIA >Mature_332_residues TSFHTQVVFDAPGSPEVMKLVQGPAPSPQVGEVLIRVAAAGVNGPDLAQRKGAYPPPPGASPILGLEVSGEVVEVAPDVS WPRIGDKVCALVPGGGYAGLVVTPALHCLPIPLTMSLEEAAGLPETFFTVWGNLFMRAGLKAGETLLIQGGSGGIGSTAI LLARAFGARVLVTSGSAEKREYCVSLGADMAFDYRDEALVDRVLAATDGRGVDVVLDMAGGAMVNNNLKMLANDGRMVSV AMQAGPRAEVDVFRIMSKRILWTGSTLRPQSIEAKAAIAKELREKVWPLLDSGQCRIPLFGVYRLDEVVKVHSIMEAKSH HGKLVLSLDGIA
Specific function: Unknown
COG id: COG0604
COG function: function code CR; NADPH:quinone reductase and related Zn-dependent oxidoreductases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the zinc-containing alcohol dehydrogenase family. Quinone oxidoreductase subfamily [H]
Homologues:
Organism=Homo sapiens, GI22538446, Length=328, Percent_Identity=38.719512195122, Blast_Score=207, Evalue=1e-53, Organism=Homo sapiens, GI22538444, Length=328, Percent_Identity=38.719512195122, Blast_Score=207, Evalue=1e-53, Organism=Homo sapiens, GI194239674, Length=319, Percent_Identity=28.2131661442006, Blast_Score=124, Evalue=1e-28, Organism=Homo sapiens, GI13236495, Length=319, Percent_Identity=28.2131661442006, Blast_Score=124, Evalue=1e-28, Organism=Homo sapiens, GI24308257, Length=344, Percent_Identity=27.3255813953488, Blast_Score=103, Evalue=2e-22, Organism=Homo sapiens, GI41872631, Length=220, Percent_Identity=34.5454545454545, Blast_Score=101, Evalue=8e-22, Organism=Homo sapiens, GI194239676, Length=193, Percent_Identity=32.6424870466321, Blast_Score=100, Evalue=2e-21, Organism=Homo sapiens, GI18379349, Length=311, Percent_Identity=25.4019292604502, Blast_Score=99, Evalue=7e-21, Organism=Homo sapiens, GI28557745, Length=223, Percent_Identity=31.8385650224215, Blast_Score=87, Evalue=2e-17, Organism=Homo sapiens, GI197927207, Length=199, Percent_Identity=27.1356783919598, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI47519420, Length=244, Percent_Identity=29.5081967213115, Blast_Score=76, Evalue=5e-14, Organism=Escherichia coli, GI1790485, Length=328, Percent_Identity=29.8780487804878, Blast_Score=117, Evalue=1e-27, Organism=Caenorhabditis elegans, GI17507255, Length=328, Percent_Identity=28.0487804878049, Blast_Score=101, Evalue=5e-22, Organism=Caenorhabditis elegans, GI212642053, Length=217, Percent_Identity=29.9539170506912, Blast_Score=69, Evalue=4e-12, Organism=Caenorhabditis elegans, GI17536829, Length=296, Percent_Identity=26.0135135135135, Blast_Score=67, Evalue=1e-11, Organism=Saccharomyces cerevisiae, GI6319520, Length=329, Percent_Identity=26.7477203647416, Blast_Score=87, Evalue=5e-18, Organism=Saccharomyces cerevisiae, GI6324486, Length=307, Percent_Identity=28.0130293159609, Blast_Score=86, Evalue=1e-17, Organism=Saccharomyces cerevisiae, GI6323961, Length=290, Percent_Identity=28.2758620689655, Blast_Score=84, Evalue=2e-17, Organism=Saccharomyces cerevisiae, GI6319621, Length=344, Percent_Identity=26.453488372093, Blast_Score=76, Evalue=1e-14, Organism=Saccharomyces cerevisiae, GI6323729, Length=332, Percent_Identity=25, Blast_Score=70, Evalue=5e-13, Organism=Drosophila melanogaster, GI221330659, Length=182, Percent_Identity=33.5164835164835, Blast_Score=92, Evalue=4e-19, Organism=Drosophila melanogaster, GI19920632, Length=182, Percent_Identity=33.5164835164835, Blast_Score=92, Evalue=5e-19, Organism=Drosophila melanogaster, GI24581345, Length=182, Percent_Identity=30.2197802197802, Blast_Score=84, Evalue=2e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013149 - InterPro: IPR013154 - InterPro: IPR002085 - InterPro: IPR011032 - InterPro: IPR016040 - InterPro: IPR002364 [H]
Pfam domain/function: PF08240 ADH_N; PF00107 ADH_zinc_N [H]
EC number: =1.6.5.5 [H]
Molecular weight: Translated: 35045; Mature: 34914
Theoretical pI: Translated: 6.37; Mature: 6.37
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSFHTQVVFDAPGSPEVMKLVQGPAPSPQVGEVLIRVAAAGVNGPDLAQRKGAYPPPPG CCCCEEEEEEECCCCHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCC ASPILGLEVSGEVVEVAPDVSWPRIGDKVCALVPGGGYAGLVVTPALHCLPIPLTMSLEE CCCEEEEEECCCEEEECCCCCCCCCCCEEEEEECCCCEECHHHHCCHHHCCCCEEEEHHH AAGLPETFFTVWGNLFMRAGLKAGETLLIQGGSGGIGSTAILLARAFGARVLVTSGSAEK HCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCEEEEECCCCHH REYCVSLGADMAFDYRDEALVDRVLAATDGRGVDVVLDMAGGAMVNNNLKMLANDGRMVS HHHHHHCCCCCEECCCHHHHHHHHHHHCCCCCEEEEEEECCCEEECCCEEEEECCCEEEE VAMQAGPRAEVDVFRIMSKRILWTGSTLRPQSIEAKAAIAKELREKVWPLLDSGQCRIPL EEECCCCCCHHHHHHHHHHHEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEE FGVYRLDEVVKVHSIMEAKSHHGKLVLSLDGIA EEHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC >Mature Secondary Structure TSFHTQVVFDAPGSPEVMKLVQGPAPSPQVGEVLIRVAAAGVNGPDLAQRKGAYPPPPG CCCEEEEEEECCCCHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCC ASPILGLEVSGEVVEVAPDVSWPRIGDKVCALVPGGGYAGLVVTPALHCLPIPLTMSLEE CCCEEEEEECCCEEEECCCCCCCCCCCEEEEEECCCCEECHHHHCCHHHCCCCEEEEHHH AAGLPETFFTVWGNLFMRAGLKAGETLLIQGGSGGIGSTAILLARAFGARVLVTSGSAEK HCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCEEEEECCCCHH REYCVSLGADMAFDYRDEALVDRVLAATDGRGVDVVLDMAGGAMVNNNLKMLANDGRMVS HHHHHHCCCCCEECCCHHHHHHHHHHHCCCCCEEEEEEECCCEEECCCEEEEECCCEEEE VAMQAGPRAEVDVFRIMSKRILWTGSTLRPQSIEAKAAIAKELREKVWPLLDSGQCRIPL EEECCCCCCHHHHHHHHHHHEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEE FGVYRLDEVVKVHSIMEAKSHHGKLVLSLDGIA EEHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8265357; 9278503; 7602590 [H]