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The map label for this gene is ybaK [H]

Identifier: 119773671

GI number: 119773671

Start: 654762

End: 655235

Strand: Direct

Name: ybaK [H]

Synonym: Sama_0531

Alternate gene names: 119773671

Gene position: 654762-655235 (Clockwise)

Preceding gene: 119773670

Following gene: 119773672

Centisome position: 15.21

GC content: 57.38

Gene sequence:

>474_bases
ATGACTCCAGCAATTAAACAGGCCGAAAAAGCCGGGATCCCGTTTTCAGTGCTCGAATATGAGCACGATAGCCGTGCGCC
ATCCTACGGTATGGAGGCCGCCGATAAATTGGGGCTCGCCCCCGAATTGGTCTTCAAAACCCTGATGGTGGCGCTTGACG
AAAAGTCTGCCCCCATCGCCGTGGCCTTGGTGCCGGTAGCAAAGCAGCTGAACCTTAAACTGGCTGCCAAGGCCCTGGGA
CAAAAGAAGTTGGTGATGGCAAACCCGACGGCCGCAGAGCGTTCCAGCGGTTATCTGCTGGGGGGCATAAGTCCGCTGGG
GCAGAAAAAGCCTTTGCCCACTCTCATAGATATCAGCGCTGAGGCGTTGGCACAGATGCATGTGAGCGCAGGTCGACGGG
GGCTGGAGATTGCCCTGGCACCCCAAAGCCTGGCTGGGCTTTGTCGGGGAGTTTTTGTCGCAATAACAGGCTGA

Upstream 100 bases:

>100_bases
TTTGGCACACAGCGCCCATTCACAGGCTTTAGCTTCCCTGTGGATTTACCCACCGCAATCAGGGTGGCACACTGGAGAAA
ACTCCCAATCAGTTATGCCC

Downstream 100 bases:

>100_bases
AAGCCGGTGTTTAAAGTTTAACTATCTGTATATCAATGGATATTTTTAGCATTCATTGACTAGCGCTTTTTGTTTTTGGC
AAATGTGCGGCAGATCAATA

Product: YbaK/EbsC protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 157; Mature: 156

Protein sequence:

>157_residues
MTPAIKQAEKAGIPFSVLEYEHDSRAPSYGMEAADKLGLAPELVFKTLMVALDEKSAPIAVALVPVAKQLNLKLAAKALG
QKKLVMANPTAAERSSGYLLGGISPLGQKKPLPTLIDISAEALAQMHVSAGRRGLEIALAPQSLAGLCRGVFVAITG

Sequences:

>Translated_157_residues
MTPAIKQAEKAGIPFSVLEYEHDSRAPSYGMEAADKLGLAPELVFKTLMVALDEKSAPIAVALVPVAKQLNLKLAAKALG
QKKLVMANPTAAERSSGYLLGGISPLGQKKPLPTLIDISAEALAQMHVSAGRRGLEIALAPQSLAGLCRGVFVAITG
>Mature_156_residues
TPAIKQAEKAGIPFSVLEYEHDSRAPSYGMEAADKLGLAPELVFKTLMVALDEKSAPIAVALVPVAKQLNLKLAAKALGQ
KKLVMANPTAAERSSGYLLGGISPLGQKKPLPTLIDISAEALAQMHVSAGRRGLEIALAPQSLAGLCRGVFVAITG

Specific function: Functions in trans to edit the amino acid from incorrectly charged Cys-tRNA(Pro). May compensate for the lack of Cys-tRNA(Pro) editing by ProRS. Additionally serves as a general deacylase with weak activity against Cys-tRNA(Cys) and Gly- tRNA(Gly), as wel

COG id: COG2606

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the prolyl-tRNA editing family. ProX subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786688, Length=155, Percent_Identity=52.9032258064516, Blast_Score=157, Evalue=3e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004369
- InterPro:   IPR007214 [H]

Pfam domain/function: PF04073 YbaK [H]

EC number: NA

Molecular weight: Translated: 16341; Mature: 16210

Theoretical pI: Translated: 9.80; Mature: 9.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPAIKQAEKAGIPFSVLEYEHDSRAPSYGMEAADKLGLAPELVFKTLMVALDEKSAPIA
CCCCHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHCCCCCCEE
VALVPVAKQLNLKLAAKALGQKKLVMANPTAAERSSGYLLGGISPLGQKKPLPTLIDISA
EEEECHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECCCCCCCCCCCCCEECCCH
EALAQMHVSAGRRGLEIALAPQSLAGLCRGVFVAITG
HHHHHHHHHCCCCCEEEEECCHHHHHHHCCEEEEECC
>Mature Secondary Structure 
TPAIKQAEKAGIPFSVLEYEHDSRAPSYGMEAADKLGLAPELVFKTLMVALDEKSAPIA
CCCHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHCCCCCCEE
VALVPVAKQLNLKLAAKALGQKKLVMANPTAAERSSGYLLGGISPLGQKKPLPTLIDISA
EEEECHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECCCCCCCCCCCCCEECCCH
EALAQMHVSAGRRGLEIALAPQSLAGLCRGVFVAITG
HHHHHHHHHCCCCCEEEEECCHHHHHHHCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 3012467; 10493123 [H]