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The map label for this gene is agmR [H]

Identifier: 119773662

GI number: 119773662

Start: 643103

End: 643774

Strand: Direct

Name: agmR [H]

Synonym: Sama_0522

Alternate gene names: 119773662

Gene position: 643103-643774 (Clockwise)

Preceding gene: 119773661

Following gene: 119773664

Centisome position: 14.93

GC content: 49.7

Gene sequence:

>672_bases
ATGTCTCAAATAAAAGTGGCAATCGCAGATGACCACCCACTATTTCGCGCAGCATTAACTCAGGCAGTGCTCAAAAATGT
GAATACGGCAGAGGTATTGGAGGCCGAAAACTTTCAGGAGCTCATCCGGGTCATTGAAAGTCATCCCGATATTGAACTGG
TATTTCTTGACCTGCATATGCCTGGCAATGAAGGGTTTACCGGATTAACTCTGTTGCAGAACCATTTCCCCGATATCGTA
GTGATTATGGTGTCATCGGACGATCAGCCCGACATCATTCGCAAGGCTATTAACCTGGGCGCCAGCGCCTTTATTCCCAA
GTCGGCCAACCTCAATCAAATAGCCGATGCCATAGGCACAGTGCTGGACGGTGAGGTGTGGTTGCCTGATAACACAGATA
TCAATGTCGACCAACAGACGGCGGCAGAGCATCAGCGACTGGCCAAACAACTTGCCCAGCTGACGCCACAGCAATACACA
GTGCTTGCCAGCATTGCCAATGGCCAGCTTAATAAGCAAATTGCTTACGATCTCAATATCAAGGAAACCACGGTCAAAAA
GCATGTGTCGGCCATCCTGTTGAAACTGGAAGTTTACAATCGCACCCAGGCAGGGCTGGTGTTTCAGCAATTGATGATCA
CCAGCAGCGACAAGCAGACGGCGACGGCCTGA

Upstream 100 bases:

>100_bases
ACCGACTCTTATGGGTCGGTTATTTGTTGAGGCAGAACAGGTTTGTCTGGAATTAATTTTTGGTGGTATTAAACTGGGTT
AAAAATAAAGGGAGTGGATT

Downstream 100 bases:

>100_bases
GTAAACCGCGTGAGTCGATAAAAATGCGCAATCAAAACAGCGGCATAAGGCCGCTGTTTTTGATTGTGCTTGGCGGTACG
CCCCGTGCTGAGACGCGTTA

Product: response regulator receiver protein

Products: NA

Alternate protein names: Protein AgmR [H]

Number of amino acids: Translated: 223; Mature: 222

Protein sequence:

>223_residues
MSQIKVAIADDHPLFRAALTQAVLKNVNTAEVLEAENFQELIRVIESHPDIELVFLDLHMPGNEGFTGLTLLQNHFPDIV
VIMVSSDDQPDIIRKAINLGASAFIPKSANLNQIADAIGTVLDGEVWLPDNTDINVDQQTAAEHQRLAKQLAQLTPQQYT
VLASIANGQLNKQIAYDLNIKETTVKKHVSAILLKLEVYNRTQAGLVFQQLMITSSDKQTATA

Sequences:

>Translated_223_residues
MSQIKVAIADDHPLFRAALTQAVLKNVNTAEVLEAENFQELIRVIESHPDIELVFLDLHMPGNEGFTGLTLLQNHFPDIV
VIMVSSDDQPDIIRKAINLGASAFIPKSANLNQIADAIGTVLDGEVWLPDNTDINVDQQTAAEHQRLAKQLAQLTPQQYT
VLASIANGQLNKQIAYDLNIKETTVKKHVSAILLKLEVYNRTQAGLVFQQLMITSSDKQTATA
>Mature_222_residues
SQIKVAIADDHPLFRAALTQAVLKNVNTAEVLEAENFQELIRVIESHPDIELVFLDLHMPGNEGFTGLTLLQNHFPDIVV
IMVSSDDQPDIIRKAINLGASAFIPKSANLNQIADAIGTVLDGEVWLPDNTDINVDQQTAAEHQRLAKQLAQLTPQQYTV
LASIANGQLNKQIAYDLNIKETTVKKHVSAILLKLEVYNRTQAGLVFQQLMITSSDKQTATA

Specific function: Positive activator for glycerol metabolism [H]

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1786747, Length=200, Percent_Identity=26.5, Blast_Score=81, Evalue=5e-17,
Organism=Escherichia coli, GI1789937, Length=205, Percent_Identity=26.3414634146341, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1788521, Length=210, Percent_Identity=29.0476190476191, Blast_Score=75, Evalue=2e-15,
Organism=Escherichia coli, GI1788712, Length=193, Percent_Identity=29.0155440414508, Blast_Score=67, Evalue=7e-13,
Organism=Escherichia coli, GI1788546, Length=209, Percent_Identity=25.3588516746411, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1790102, Length=197, Percent_Identity=26.3959390862944, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1788222, Length=201, Percent_Identity=22.8855721393035, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1787473, Length=206, Percent_Identity=29.6116504854369, Blast_Score=64, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR016032
- InterPro:   IPR001789
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 24545; Mature: 24414

Theoretical pI: Translated: 4.73; Mature: 4.73

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQIKVAIADDHPLFRAALTQAVLKNVNTAEVLEAENFQELIRVIESHPDIELVFLDLHM
CCCEEEEEECCCHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHCCCCEEEEEEEEEC
PGNEGFTGLTLLQNHFPDIVVIMVSSDDQPDIIRKAINLGASAFIPKSANLNQIADAIGT
CCCCCCHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEECCCCCCHHHHHHHHHH
VLDGEVWLPDNTDINVDQQTAAEHQRLAKQLAQLTPQQYTVLASIANGQLNKQIAYDLNI
HHCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHEEEEEHHCCCCCCEEEEECCC
KETTVKKHVSAILLKLEVYNRTQAGLVFQQLMITSSDKQTATA
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
SQIKVAIADDHPLFRAALTQAVLKNVNTAEVLEAENFQELIRVIESHPDIELVFLDLHM
CCEEEEEECCCHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHCCCCEEEEEEEEEC
PGNEGFTGLTLLQNHFPDIVVIMVSSDDQPDIIRKAINLGASAFIPKSANLNQIADAIGT
CCCCCCHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEECCCCCCHHHHHHHHHH
VLDGEVWLPDNTDINVDQQTAAEHQRLAKQLAQLTPQQYTVLASIANGQLNKQIAYDLNI
HHCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHEEEEEHHCCCCCCEEEEECCC
KETTVKKHVSAILLKLEVYNRTQAGLVFQQLMITSSDKQTATA
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1938886; 10984043 [H]