Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is 119773644

Identifier: 119773644

GI number: 119773644

Start: 617948

End: 619003

Strand: Direct

Name: 119773644

Synonym: Sama_0504

Alternate gene names: NA

Gene position: 617948-619003 (Clockwise)

Preceding gene: 119773641

Following gene: 119773645

Centisome position: 14.35

GC content: 57.48

Gene sequence:

>1056_bases
TTGAACGCACTCAGATTACTGGCTGGTAAAACCGCTTTGAAACGGATCCGCGAGGAGGGGCTCAAGCCGGAGCTTTTCAG
CCGTTTGCTGGCGGCGTCCGGTGGCCCCAAATGGCTTGGGATTGCCGGGCTCGATAAGTATCTGTTCAGTGAGTTTTTTA
AAGATCGCAAGACGCCGCTCTACACATTGGGAGCCTCGTCCGGCGCCTGGCGTCTTGCCTGTTTGGCGCAGCAGGACGTG
CTGGCGGCCTATGGCCGCCTGGAAGACTTTTATATCGGCCAGCGTTACGACACCAAACCCAGTCGTGAAGAGGTCAGCCG
CCAGGTCACAGATATTGTGGCCGGGATTCTGGGGGAGACAGGCGCCGCCGAGATATTGGCCAATCCGGTATTTCGCTCGC
ATTTTGTGGTGTGCCGTGGCCGACATTTAAATCGCGTTAATGGCAAGCTGCCCCTGGCGCTGGGGCTTTCGGTAACGGCG
GCCACCAATCTTGTCAGTCGTCGCAGTCTGGGTTGGCACTTTGAGCGGCTGGTGTTTTCGCAGGCAGACAATGACTCCCA
CTTTCGTCTGCTCAACGATTTACCCAGCCGTGATTGCAAACTGAGCCTGAGCAATCTGGCGGATGTTCTGCAGGCCACCG
GATCCATTCCCATGGTGCTGGCCCCGGTGGGGCACATTGAAGGCGCGGGCGAAGGGCATTTCTATGATGGTGGCATCACC
GACTACCATTTTGATTTCCCGCTTGAGCAGCATCAGGGGCTCACCCTGTATCCGCATTTTTTCCCCACCATCAAGCCTGG
CTGGTTTGATAAATCGCTGCCCTGGCGACGGGCCGTGGCCAATTATGATAATGCATTGCTGCTGGTGCCAAGCGCCGAGT
TTGTCGCCTCCCTGCCCAATGGAAAAATTCCTGACCGGGACGATTTTAAAACCCTGGACACACAGAGCCGTCAGCGCAGC
TGGCGGCAGGCGGCCCTGGCCAGCGAACGGTTGGCAGAGGAGTTTTCCCGGGTGCTCGAGGGTGATATATCCCCCATTGA
ATCGTTTCCGGGATGA

Upstream 100 bases:

>100_bases
GCTGGCGTGCTGGAGTATAGCGAAAGCGGCCTGCTTTGGCATCGTTAAGAATTGAGGTAACCTCTAGCCTTATTGCTGTA
GACGACCCAAGGGTAAAAGA

Downstream 100 bases:

>100_bases
AACAAATCACTGTGATAGCGGGTCTAATGCCTGAGACTGATTAATTTTTGTTCATTGATGATTGGTGCCACTCACCTGCT
AAAATTTGATCAGTTGAGTA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 351; Mature: 351

Protein sequence:

>351_residues
MNALRLLAGKTALKRIREEGLKPELFSRLLAASGGPKWLGIAGLDKYLFSEFFKDRKTPLYTLGASSGAWRLACLAQQDV
LAAYGRLEDFYIGQRYDTKPSREEVSRQVTDIVAGILGETGAAEILANPVFRSHFVVCRGRHLNRVNGKLPLALGLSVTA
ATNLVSRRSLGWHFERLVFSQADNDSHFRLLNDLPSRDCKLSLSNLADVLQATGSIPMVLAPVGHIEGAGEGHFYDGGIT
DYHFDFPLEQHQGLTLYPHFFPTIKPGWFDKSLPWRRAVANYDNALLLVPSAEFVASLPNGKIPDRDDFKTLDTQSRQRS
WRQAALASERLAEEFSRVLEGDISPIESFPG

Sequences:

>Translated_351_residues
MNALRLLAGKTALKRIREEGLKPELFSRLLAASGGPKWLGIAGLDKYLFSEFFKDRKTPLYTLGASSGAWRLACLAQQDV
LAAYGRLEDFYIGQRYDTKPSREEVSRQVTDIVAGILGETGAAEILANPVFRSHFVVCRGRHLNRVNGKLPLALGLSVTA
ATNLVSRRSLGWHFERLVFSQADNDSHFRLLNDLPSRDCKLSLSNLADVLQATGSIPMVLAPVGHIEGAGEGHFYDGGIT
DYHFDFPLEQHQGLTLYPHFFPTIKPGWFDKSLPWRRAVANYDNALLLVPSAEFVASLPNGKIPDRDDFKTLDTQSRQRS
WRQAALASERLAEEFSRVLEGDISPIESFPG
>Mature_351_residues
MNALRLLAGKTALKRIREEGLKPELFSRLLAASGGPKWLGIAGLDKYLFSEFFKDRKTPLYTLGASSGAWRLACLAQQDV
LAAYGRLEDFYIGQRYDTKPSREEVSRQVTDIVAGILGETGAAEILANPVFRSHFVVCRGRHLNRVNGKLPLALGLSVTA
ATNLVSRRSLGWHFERLVFSQADNDSHFRLLNDLPSRDCKLSLSNLADVLQATGSIPMVLAPVGHIEGAGEGHFYDGGIT
DYHFDFPLEQHQGLTLYPHFFPTIKPGWFDKSLPWRRAVANYDNALLLVPSAEFVASLPNGKIPDRDDFKTLDTQSRQRS
WRQAALASERLAEEFSRVLEGDISPIESFPG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 38999; Mature: 38999

Theoretical pI: Translated: 8.11; Mature: 8.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNALRLLAGKTALKRIREEGLKPELFSRLLAASGGPKWLGIAGLDKYLFSEFFKDRKTPL
CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHCCCCCE
YTLGASSGAWRLACLAQQDVLAAYGRLEDFYIGQRYDTKPSREEVSRQVTDIVAGILGET
EEECCCCCCEEEEHHHHHHHHHHHHCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC
GAAEILANPVFRSHFVVCRGRHLNRVNGKLPLALGLSVTAATNLVSRRSLGWHFERLVFS
CHHHHHHCHHHHHHEEEECCCCCCCCCCCCCEEECCHHHHHHHHHHHHHCCHHHHHHHHH
QADNDSHFRLLNDLPSRDCKLSLSNLADVLQATGSIPMVLAPVGHIEGAGEGHFYDGGIT
CCCCCCHHHHHHCCCCCCCEEEHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCEECCCCC
DYHFDFPLEQHQGLTLYPHFFPTIKPGWFDKSLPWRRAVANYDNALLLVPSAEFVASLPN
CEEECCCHHHCCCCEECCCCCCCCCCCCCCCCCCHHHHHHCCCCEEEEEECHHHHHCCCC
GKIPDRDDFKTLDTQSRQRSWRQAALASERLAEEFSRVLEGDISPIESFPG
CCCCCCCCCCHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCC
>Mature Secondary Structure
MNALRLLAGKTALKRIREEGLKPELFSRLLAASGGPKWLGIAGLDKYLFSEFFKDRKTPL
CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHCCCCCE
YTLGASSGAWRLACLAQQDVLAAYGRLEDFYIGQRYDTKPSREEVSRQVTDIVAGILGET
EEECCCCCCEEEEHHHHHHHHHHHHCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC
GAAEILANPVFRSHFVVCRGRHLNRVNGKLPLALGLSVTAATNLVSRRSLGWHFERLVFS
CHHHHHHCHHHHHHEEEECCCCCCCCCCCCCEEECCHHHHHHHHHHHHHCCHHHHHHHHH
QADNDSHFRLLNDLPSRDCKLSLSNLADVLQATGSIPMVLAPVGHIEGAGEGHFYDGGIT
CCCCCCHHHHHHCCCCCCCEEEHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCEECCCCC
DYHFDFPLEQHQGLTLYPHFFPTIKPGWFDKSLPWRRAVANYDNALLLVPSAEFVASLPN
CEEECCCHHHCCCCEECCCCCCCCCCCCCCCCCCHHHHHHCCCCEEEEEECHHHHHCCCC
GKIPDRDDFKTLDTQSRQRSWRQAALASERLAEEFSRVLEGDISPIESFPG
CCCCCCCCCCHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA