| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119773639
Identifier: 119773639
GI number: 119773639
Start: 613827
End: 614441
Strand: Direct
Name: 119773639
Synonym: Sama_0499
Alternate gene names: NA
Gene position: 613827-614441 (Clockwise)
Preceding gene: 119773638
Following gene: 119773641
Centisome position: 14.25
GC content: 57.07
Gene sequence:
>615_bases ATGAGTCGTCGGGCCGAATATCCAGAATGGCTTGCGGACATTCGCGCCGTTGTTTTCGACCTCGATGGCACCCTGGCACA TTCCAATCCTGACTTTCCGGCTATCCGGCAGGCACTCGGTCTTAGTGCCGGGGAGGATATTCTGGCCCATATAGCAGGTT TGCCAGCGGCGAAGCAGGCCGGCGCCATGGCGACAGTGCATCATTATGAAATGGCGGCCTCTCACCGGGCTGAATGGATA GGGGGCGCAGCAGAACTGCTGCAGTTTGTGCAGCAAAAAACGCTGCCAACGGCGATATTGACCCGCAATATGCGCCAGGC GGCTGAGTTGACACTGTCGCGTCTGGGATTATCGGTTGAAGTATTACTGACCCGGGAAGATGCCCCGGCTAAGCCAGACC CTGCCGGCCTCATCCACATCATGGACATCTGGCGGCTTGAGCCAACTCAGGTACTCTATGTGGGTGACTATCTCTTTGAC TTACAGACGGCACGGGGCGCCGGTTGCCGCTCTGCGCTCTATTGCCCTGATGGCAAGCCGGACTACGGCGACATGGCTGA CTTGCTGGTACCCTGTTATTTTGAACTCATTGATTTGTGGCGCGGCGCTGAATAA
Upstream 100 bases:
>100_bases TGAGCATGACGGGAATAGTGCTGATTGTGCTGGCGGTGGCCGCCTTGCAATTGTTGCCAAGATACCTGGCTTTGTTTACT AAACCCGGGAGCGCGCAGCC
Downstream 100 bases:
>100_bases ACCATCTCAGGCTGTCCAAAATCCCCAGCAGCCAAACGCCGAGGAACAGATAAAGGGCACCAGAGCCGATAGCGACACTG CGATTGTGGATTTCCGCCAG
Product: HAD superfamily hydrolase
Products: NA
Alternate protein names: HAD Superfamily Hydrolase; Phosphoglycolate Phosphatase; Hydrolase/Phosphatase Protein; Phosphatase; Phosphoglycolate Phosphatase PGP; HAD-Superfamily Hydrolase; Haloacid Dehalogenase-Like Hydrolase; Had-Superfamily Hydrolase Protein; Hydrolase; Haloacid Dehalogenase Hydrolase; Hydrolase HAD-Family Protein
Number of amino acids: Translated: 204; Mature: 203
Protein sequence:
>204_residues MSRRAEYPEWLADIRAVVFDLDGTLAHSNPDFPAIRQALGLSAGEDILAHIAGLPAAKQAGAMATVHHYEMAASHRAEWI GGAAELLQFVQQKTLPTAILTRNMRQAAELTLSRLGLSVEVLLTREDAPAKPDPAGLIHIMDIWRLEPTQVLYVGDYLFD LQTARGAGCRSALYCPDGKPDYGDMADLLVPCYFELIDLWRGAE
Sequences:
>Translated_204_residues MSRRAEYPEWLADIRAVVFDLDGTLAHSNPDFPAIRQALGLSAGEDILAHIAGLPAAKQAGAMATVHHYEMAASHRAEWI GGAAELLQFVQQKTLPTAILTRNMRQAAELTLSRLGLSVEVLLTREDAPAKPDPAGLIHIMDIWRLEPTQVLYVGDYLFD LQTARGAGCRSALYCPDGKPDYGDMADLLVPCYFELIDLWRGAE >Mature_203_residues SRRAEYPEWLADIRAVVFDLDGTLAHSNPDFPAIRQALGLSAGEDILAHIAGLPAAKQAGAMATVHHYEMAASHRAEWIG GAAELLQFVQQKTLPTAILTRNMRQAAELTLSRLGLSVEVLLTREDAPAKPDPAGLIHIMDIWRLEPTQVLYVGDYLFDL QTARGAGCRSALYCPDGKPDYGDMADLLVPCYFELIDLWRGAE
Specific function: Unknown
COG id: COG0546
COG function: function code R; Predicted phosphatases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Saccharomyces cerevisiae, GI6324705, Length=172, Percent_Identity=33.1395348837209, Blast_Score=89, Evalue=6e-19,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22385; Mature: 22254
Theoretical pI: Translated: 4.75; Mature: 4.75
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRRAEYPEWLADIRAVVFDLDGTLAHSNPDFPAIRQALGLSAGEDILAHIAGLPAAKQA CCCCCCCHHHHHHHHHHHHCCCCCEECCCCCHHHHHHHHCCCCCHHHHHHHHCCCCHHHC GAMATVHHYEMAASHRAEWIGGAAELLQFVQQKTLPTAILTRNMRQAAELTLSRLGLSVE CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCEEE VLLTREDAPAKPDPAGLIHIMDIWRLEPTQVLYVGDYLFDLQTARGAGCRSALYCPDGKP EEEECCCCCCCCCCCCEEEEHHHHCCCCCEEEEECHHHHHHHHHCCCCCCCEEECCCCCC DYGDMADLLVPCYFELIDLWRGAE CCCCHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure SRRAEYPEWLADIRAVVFDLDGTLAHSNPDFPAIRQALGLSAGEDILAHIAGLPAAKQA CCCCCCHHHHHHHHHHHHCCCCCEECCCCCHHHHHHHHCCCCCHHHHHHHHCCCCHHHC GAMATVHHYEMAASHRAEWIGGAAELLQFVQQKTLPTAILTRNMRQAAELTLSRLGLSVE CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCEEE VLLTREDAPAKPDPAGLIHIMDIWRLEPTQVLYVGDYLFDLQTARGAGCRSALYCPDGKP EEEECCCCCCCCCCCCEEEEHHHHCCCCCEEEEECHHHHHHHHHCCCCCCCEEECCCCCC DYGDMADLLVPCYFELIDLWRGAE CCCCHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA