Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

Click here to switch to the map view.

The map label for this gene is 119773639

Identifier: 119773639

GI number: 119773639

Start: 613827

End: 614441

Strand: Direct

Name: 119773639

Synonym: Sama_0499

Alternate gene names: NA

Gene position: 613827-614441 (Clockwise)

Preceding gene: 119773638

Following gene: 119773641

Centisome position: 14.25

GC content: 57.07

Gene sequence:

>615_bases
ATGAGTCGTCGGGCCGAATATCCAGAATGGCTTGCGGACATTCGCGCCGTTGTTTTCGACCTCGATGGCACCCTGGCACA
TTCCAATCCTGACTTTCCGGCTATCCGGCAGGCACTCGGTCTTAGTGCCGGGGAGGATATTCTGGCCCATATAGCAGGTT
TGCCAGCGGCGAAGCAGGCCGGCGCCATGGCGACAGTGCATCATTATGAAATGGCGGCCTCTCACCGGGCTGAATGGATA
GGGGGCGCAGCAGAACTGCTGCAGTTTGTGCAGCAAAAAACGCTGCCAACGGCGATATTGACCCGCAATATGCGCCAGGC
GGCTGAGTTGACACTGTCGCGTCTGGGATTATCGGTTGAAGTATTACTGACCCGGGAAGATGCCCCGGCTAAGCCAGACC
CTGCCGGCCTCATCCACATCATGGACATCTGGCGGCTTGAGCCAACTCAGGTACTCTATGTGGGTGACTATCTCTTTGAC
TTACAGACGGCACGGGGCGCCGGTTGCCGCTCTGCGCTCTATTGCCCTGATGGCAAGCCGGACTACGGCGACATGGCTGA
CTTGCTGGTACCCTGTTATTTTGAACTCATTGATTTGTGGCGCGGCGCTGAATAA

Upstream 100 bases:

>100_bases
TGAGCATGACGGGAATAGTGCTGATTGTGCTGGCGGTGGCCGCCTTGCAATTGTTGCCAAGATACCTGGCTTTGTTTACT
AAACCCGGGAGCGCGCAGCC

Downstream 100 bases:

>100_bases
ACCATCTCAGGCTGTCCAAAATCCCCAGCAGCCAAACGCCGAGGAACAGATAAAGGGCACCAGAGCCGATAGCGACACTG
CGATTGTGGATTTCCGCCAG

Product: HAD superfamily hydrolase

Products: NA

Alternate protein names: HAD Superfamily Hydrolase; Phosphoglycolate Phosphatase; Hydrolase/Phosphatase Protein; Phosphatase; Phosphoglycolate Phosphatase PGP; HAD-Superfamily Hydrolase; Haloacid Dehalogenase-Like Hydrolase; Had-Superfamily Hydrolase Protein; Hydrolase; Haloacid Dehalogenase Hydrolase; Hydrolase HAD-Family Protein

Number of amino acids: Translated: 204; Mature: 203

Protein sequence:

>204_residues
MSRRAEYPEWLADIRAVVFDLDGTLAHSNPDFPAIRQALGLSAGEDILAHIAGLPAAKQAGAMATVHHYEMAASHRAEWI
GGAAELLQFVQQKTLPTAILTRNMRQAAELTLSRLGLSVEVLLTREDAPAKPDPAGLIHIMDIWRLEPTQVLYVGDYLFD
LQTARGAGCRSALYCPDGKPDYGDMADLLVPCYFELIDLWRGAE

Sequences:

>Translated_204_residues
MSRRAEYPEWLADIRAVVFDLDGTLAHSNPDFPAIRQALGLSAGEDILAHIAGLPAAKQAGAMATVHHYEMAASHRAEWI
GGAAELLQFVQQKTLPTAILTRNMRQAAELTLSRLGLSVEVLLTREDAPAKPDPAGLIHIMDIWRLEPTQVLYVGDYLFD
LQTARGAGCRSALYCPDGKPDYGDMADLLVPCYFELIDLWRGAE
>Mature_203_residues
SRRAEYPEWLADIRAVVFDLDGTLAHSNPDFPAIRQALGLSAGEDILAHIAGLPAAKQAGAMATVHHYEMAASHRAEWIG
GAAELLQFVQQKTLPTAILTRNMRQAAELTLSRLGLSVEVLLTREDAPAKPDPAGLIHIMDIWRLEPTQVLYVGDYLFDL
QTARGAGCRSALYCPDGKPDYGDMADLLVPCYFELIDLWRGAE

Specific function: Unknown

COG id: COG0546

COG function: function code R; Predicted phosphatases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Saccharomyces cerevisiae, GI6324705, Length=172, Percent_Identity=33.1395348837209, Blast_Score=89, Evalue=6e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22385; Mature: 22254

Theoretical pI: Translated: 4.75; Mature: 4.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRRAEYPEWLADIRAVVFDLDGTLAHSNPDFPAIRQALGLSAGEDILAHIAGLPAAKQA
CCCCCCCHHHHHHHHHHHHCCCCCEECCCCCHHHHHHHHCCCCCHHHHHHHHCCCCHHHC
GAMATVHHYEMAASHRAEWIGGAAELLQFVQQKTLPTAILTRNMRQAAELTLSRLGLSVE
CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCEEE
VLLTREDAPAKPDPAGLIHIMDIWRLEPTQVLYVGDYLFDLQTARGAGCRSALYCPDGKP
EEEECCCCCCCCCCCCEEEEHHHHCCCCCEEEEECHHHHHHHHHCCCCCCCEEECCCCCC
DYGDMADLLVPCYFELIDLWRGAE
CCCCHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SRRAEYPEWLADIRAVVFDLDGTLAHSNPDFPAIRQALGLSAGEDILAHIAGLPAAKQA
CCCCCCHHHHHHHHHHHHCCCCCEECCCCCHHHHHHHHCCCCCHHHHHHHHCCCCHHHC
GAMATVHHYEMAASHRAEWIGGAAELLQFVQQKTLPTAILTRNMRQAAELTLSRLGLSVE
CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCEEE
VLLTREDAPAKPDPAGLIHIMDIWRLEPTQVLYVGDYLFDLQTARGAGCRSALYCPDGKP
EEEECCCCCCCCCCCCEEEEHHHHCCCCCEEEEECHHHHHHHHHCCCCCCCEEECCCCCC
DYGDMADLLVPCYFELIDLWRGAE
CCCCHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA