Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is yhdL [C]

Identifier: 119773624

GI number: 119773624

Start: 595488

End: 595727

Strand: Direct

Name: yhdL [C]

Synonym: Sama_0484

Alternate gene names: 119773624

Gene position: 595488-595727 (Clockwise)

Preceding gene: 119773622

Following gene: 119773626

Centisome position: 13.83

GC content: 50.83

Gene sequence:

>240_bases
GTGAGTAACCATCACGATCACGGCCGCGGCGACGTACGCGACAATGCCATTAAGGCGCTGGTGACCTCAGACCTGTTCAG
GTCGAAGGTCGAAAAACCCAAAAAAGGCAAAGGGTCTTATCAACGTAAGGCGCGCAACCAGAAGGGGCATCAGCTTAAGG
GCGATGCCCCTTTTGATTTAAGGGCGTTTGGCACGGTAAAAACAAAAAACGGGCATAAAGCCCGTTTTTTAATGTGCTGA

Upstream 100 bases:

>100_bases
GACAAAACAGAACCGTTCGGGTCTTTTCAGAAGTTTGATCTGGATCCCGGCGGCCATTGGTCTTATGCTTGGCCGGTTTT
TAACCAAAGGAGCAATATCT

Downstream 100 bases:

>100_bases
ATCTTAGTCTTCCAGGGCAACCAACTCGGCCCAGAGATCGTGCTCATCTGAGGCAACGATGCGGGCACGCACCATATCAC
CGGGAGTCAGCTCGGTTTCG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 79; Mature: 78

Protein sequence:

>79_residues
MSNHHDHGRGDVRDNAIKALVTSDLFRSKVEKPKKGKGSYQRKARNQKGHQLKGDAPFDLRAFGTVKTKNGHKARFLMC

Sequences:

>Translated_79_residues
MSNHHDHGRGDVRDNAIKALVTSDLFRSKVEKPKKGKGSYQRKARNQKGHQLKGDAPFDLRAFGTVKTKNGHKARFLMC
>Mature_78_residues
SNHHDHGRGDVRDNAIKALVTSDLFRSKVEKPKKGKGSYQRKARNQKGHQLKGDAPFDLRAFGTVKTKNGHKARFLMC

Specific function: Unknown

COG id: COG3036

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 8917; Mature: 8786

Theoretical pI: Translated: 11.23; Mature: 11.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNHHDHGRGDVRDNAIKALVTSDLFRSKVEKPKKGKGSYQRKARNQKGHQLKGDAPFDL
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCCCCCCCCE
RAFGTVKTKNGHKARFLMC
EEEEEEECCCCCCEEEECC
>Mature Secondary Structure 
SNHHDHGRGDVRDNAIKALVTSDLFRSKVEKPKKGKGSYQRKARNQKGHQLKGDAPFDL
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCCCCCCCCE
RAFGTVKTKNGHKARFLMC
EEEEEEECCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA