Click here to switch to the map view.

The map label for this gene is rng [H]

Identifier: 119773611

GI number: 119773611

Start: 576329

End: 577837

Strand: Direct

Name: rng [H]

Synonym: Sama_0471

Alternate gene names: 119773611

Gene position: 576329-577837 (Clockwise)

Preceding gene: 119773610

Following gene: 119773612

Centisome position: 13.38

GC content: 55.33

Gene sequence:

>1509_bases
GTGAACACTGTGAGTAACTCCAGTCAGAAAAATCCGCGCAAGATTGGCTCTGAGCTTTTGATTAATGTCACCCCCAACGA
GGCCAGAGTGGCGCTCGTGGAACACGGGGTGTTGCAGGAAGTCCATATCGAGCGCCGGATGAAGCGCGGCCTCGTGGGCA
ATATCTACAAGGGCAAAATCAGCCGGGTTCTCCCTGGCATGCAAGCTGCCTTTGTTGACATCGGCCTTGATAAGGCCGCG
TTTTTACATGCCTCCGACATCATGCCCCATACTGAATGCGTGGCCGATGTGGAAAAAGGCAACTTTGTGGTGCGCGACAT
CGCCGAGCTGGTGCGTCAGGGCCAGGACATCATGGTTCAGGTGGTAAAAGACCCCCTGGGAACCAAGGGGGCGCGTCTGA
CCACAGACATCACACTGCCTTCCCGTTATCTGGTATTTATGCCCGGCTCAGCCCATGTGGGTGTTTCCCAACGTATTGAA
TCGGAAGATGAAAGAACACGCCTGAAAGAAGCTACATTGCCCTTTGTTGACGAGGATGGCGGCTTTATTATCCGTACCGC
GGCCGAAGGCGCCGGTGCCGAAGAGTTGGCACAGGATGCCGCCTTCCTGCGACGGGTCTGGGCCAAGGTAGCAGAGCGGC
GCAAGCGTAAGGGCAGCTCACTGCTTTATCAGGATCTTGCCTTGCCGGTGCGCATCGTACGCGACTTTGTCGGGACAGAT
CTGGATCGTATTCAGGTGGACTCCCGCAGCACCTTCGAAGAGCTCAAGCATTTCGCCCAGGAGTTCATGCCGGAGTTTGA
AGAAAAAATTGAGCTCTACAGCGGCAGCGTGCCCATCTTTGACCTCTACGATGTAGAAAACGAAATCCAGCGTGCCCTGG
GGCGCAAAGTGGAACTCAAGTCCGGTGGTTACCTGATTATCGACCAGACCGAGGCCATGACGACTGTGGATATCAACACG
GGCGCCTTTGTTGGCCATCGAAATCTTGAAGAGACCATCTTCAACACCAACCTTGAGGCGACCCAGGCCATTGCCCGTCA
GCTGCGGCTGCGTAATCTCGGTGGCATTATCATAATCGACTTTATCGACATGCTCAGTGAAGACCACCGCCAGCGGGTGT
TGTCCAGTCTGACATCGGCCCTGGCCCACGACAGGGTTAAAACCAATGTGAGCGGTTTCTCCGGCCTGGGGCTGGTGGAA
ATGACCCGCAAACGCACCCGCGAGAGTCTCGAACATGTGCTCTGCGGCGAGTGTCCTGCCTGTAAGGGCAGTGGTTATAT
GAAGACGGTGGAAACGGTCACCTACGAAATTTTCCGTGAAATCATCCGTCTCGATAAGGCCTATGATGCCGATGAGTTTT
TGGTGTACTGCGCGCCTGCGGTGCACGCTTGCCTCAGCGGCGATGAGCACCACCATGTGGCTGAGCTTGAAGTCTATATT
GGCAAGCGGATCCGGGTGCAGATGGAGCCCCTGTATGCCCAGAACAAATACGATGTGGTAATGGTCTAG

Upstream 100 bases:

>100_bases
GGCTACCTTTGGTGGAGAGTCGCCGTTTACTGGCTGCATTTTCACTGATTTAAGCGGCATCGGCCCCAATCGATTAACTG
ACTTTCCCTGAGGGGTAACC

Downstream 100 bases:

>100_bases
TGGCAGCATTCTGGCGTCCGGCCTCACTGGGCCGGATTTGTGGATTAACGCTGGCAACCCTACTGGTGCTGTTTGCACTG
GGGGTCAGCCTCATCCGCAG

Product: ribonuclease G

Products: NA

Alternate protein names: RNase G; Cytoplasmic axial filament protein [H]

Number of amino acids: Translated: 502; Mature: 502

Protein sequence:

>502_residues
MNTVSNSSQKNPRKIGSELLINVTPNEARVALVEHGVLQEVHIERRMKRGLVGNIYKGKISRVLPGMQAAFVDIGLDKAA
FLHASDIMPHTECVADVEKGNFVVRDIAELVRQGQDIMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGSAHVGVSQRIE
SEDERTRLKEATLPFVDEDGGFIIRTAAEGAGAEELAQDAAFLRRVWAKVAERRKRKGSSLLYQDLALPVRIVRDFVGTD
LDRIQVDSRSTFEELKHFAQEFMPEFEEKIELYSGSVPIFDLYDVENEIQRALGRKVELKSGGYLIIDQTEAMTTVDINT
GAFVGHRNLEETIFNTNLEATQAIARQLRLRNLGGIIIIDFIDMLSEDHRQRVLSSLTSALAHDRVKTNVSGFSGLGLVE
MTRKRTRESLEHVLCGECPACKGSGYMKTVETVTYEIFREIIRLDKAYDADEFLVYCAPAVHACLSGDEHHHVAELEVYI
GKRIRVQMEPLYAQNKYDVVMV

Sequences:

>Translated_502_residues
MNTVSNSSQKNPRKIGSELLINVTPNEARVALVEHGVLQEVHIERRMKRGLVGNIYKGKISRVLPGMQAAFVDIGLDKAA
FLHASDIMPHTECVADVEKGNFVVRDIAELVRQGQDIMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGSAHVGVSQRIE
SEDERTRLKEATLPFVDEDGGFIIRTAAEGAGAEELAQDAAFLRRVWAKVAERRKRKGSSLLYQDLALPVRIVRDFVGTD
LDRIQVDSRSTFEELKHFAQEFMPEFEEKIELYSGSVPIFDLYDVENEIQRALGRKVELKSGGYLIIDQTEAMTTVDINT
GAFVGHRNLEETIFNTNLEATQAIARQLRLRNLGGIIIIDFIDMLSEDHRQRVLSSLTSALAHDRVKTNVSGFSGLGLVE
MTRKRTRESLEHVLCGECPACKGSGYMKTVETVTYEIFREIIRLDKAYDADEFLVYCAPAVHACLSGDEHHHVAELEVYI
GKRIRVQMEPLYAQNKYDVVMV
>Mature_502_residues
MNTVSNSSQKNPRKIGSELLINVTPNEARVALVEHGVLQEVHIERRMKRGLVGNIYKGKISRVLPGMQAAFVDIGLDKAA
FLHASDIMPHTECVADVEKGNFVVRDIAELVRQGQDIMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGSAHVGVSQRIE
SEDERTRLKEATLPFVDEDGGFIIRTAAEGAGAEELAQDAAFLRRVWAKVAERRKRKGSSLLYQDLALPVRIVRDFVGTD
LDRIQVDSRSTFEELKHFAQEFMPEFEEKIELYSGSVPIFDLYDVENEIQRALGRKVELKSGGYLIIDQTEAMTTVDINT
GAFVGHRNLEETIFNTNLEATQAIARQLRLRNLGGIIIIDFIDMLSEDHRQRVLSSLTSALAHDRVKTNVSGFSGLGLVE
MTRKRTRESLEHVLCGECPACKGSGYMKTVETVTYEIFREIIRLDKAYDADEFLVYCAPAVHACLSGDEHHHVAELEVYI
GKRIRVQMEPLYAQNKYDVVMV

Specific function: Involved in the processing of the 5'-end of 16S rRNA. Could be involved in chromosome segregation and cell division. It may be one of the components of the cytoplasmic axial filaments bundles or merely regulate the formation of this structure [H]

COG id: COG1530

COG function: function code J; Ribonucleases G and E

Gene ontology:

Cell location: Cytoplasm, cytoskeleton [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Escherichia coli, GI87082235, Length=487, Percent_Identity=72.6899383983573, Blast_Score=716, Evalue=0.0,
Organism=Escherichia coli, GI1787325, Length=433, Percent_Identity=40.6466512702078, Blast_Score=291, Evalue=5e-80,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR019307
- InterPro:   IPR022967
- InterPro:   IPR004659 [H]

Pfam domain/function: PF10150 RNase_E_G; PF00575 S1 [H]

EC number: 3.1.4.- [C]

Molecular weight: Translated: 56306; Mature: 56306

Theoretical pI: Translated: 6.05; Mature: 6.05

Prosite motif: PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTVSNSSQKNPRKIGSELLINVTPNEARVALVEHGVLQEVHIERRMKRGLVGNIYKGKI
CCCCCCCCCCCHHHCCCEEEEEECCCCCEEEHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
SRVLPGMQAAFVDIGLDKAAFLHASDIMPHTECVADVEKGNFVVRDIAELVRQGQDIMVQ
HHHCCCHHHHHHCCCCCHHHHEEHHCCCCHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHH
VVKDPLGTKGARLTTDITLPSRYLVFMPGSAHVGVSQRIESEDERTRLKEATLPFVDEDG
HHHCCCCCCCCEEEEEEECCCEEEEEECCCCCCCHHHHHCCHHHHHHHHHCCCCEEECCC
GFIIRTAAEGAGAEELAQDAAFLRRVWAKVAERRKRKGSSLLYQDLALPVRIVRDFVGTD
CEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCC
LDRIQVDSRSTFEELKHFAQEFMPEFEEKIELYSGSVPIFDLYDVENEIQRALGRKVELK
HHHEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHCCEEEEC
SGGYLIIDQTEAMTTVDINTGAFVGHRNLEETIFNTNLEATQAIARQLRLRNLGGIIIID
CCCEEEEECCCCEEEEECCCCCEEECCCHHHHHHCCCHHHHHHHHHHHHHHCCCCEEEEH
FIDMLSEDHRQRVLSSLTSALAHDRVKTNVSGFSGLGLVEMTRKRTRESLEHVLCGECPA
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC
CKGSGYMKTVETVTYEIFREIIRLDKAYDADEFLVYCAPAVHACLSGDEHHHVAELEVYI
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHEEEEHHHHHHHHCCCCCCCCEEEEEEE
GKRIRVQMEPLYAQNKYDVVMV
CCEEEEEECCCCCCCCCCEEEC
>Mature Secondary Structure
MNTVSNSSQKNPRKIGSELLINVTPNEARVALVEHGVLQEVHIERRMKRGLVGNIYKGKI
CCCCCCCCCCCHHHCCCEEEEEECCCCCEEEHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
SRVLPGMQAAFVDIGLDKAAFLHASDIMPHTECVADVEKGNFVVRDIAELVRQGQDIMVQ
HHHCCCHHHHHHCCCCCHHHHEEHHCCCCHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHH
VVKDPLGTKGARLTTDITLPSRYLVFMPGSAHVGVSQRIESEDERTRLKEATLPFVDEDG
HHHCCCCCCCCEEEEEEECCCEEEEEECCCCCCCHHHHHCCHHHHHHHHHCCCCEEECCC
GFIIRTAAEGAGAEELAQDAAFLRRVWAKVAERRKRKGSSLLYQDLALPVRIVRDFVGTD
CEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCC
LDRIQVDSRSTFEELKHFAQEFMPEFEEKIELYSGSVPIFDLYDVENEIQRALGRKVELK
HHHEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHCCEEEEC
SGGYLIIDQTEAMTTVDINTGAFVGHRNLEETIFNTNLEATQAIARQLRLRNLGGIIIID
CCCEEEEECCCCEEEEECCCCCEEECCCHHHHHHCCCHHHHHHHHHHHHHHCCCCEEEEH
FIDMLSEDHRQRVLSSLTSALAHDRVKTNVSGFSGLGLVEMTRKRTRESLEHVLCGECPA
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC
CKGSGYMKTVETVTYEIFREIIRLDKAYDADEFLVYCAPAVHACLSGDEHHHVAELEVYI
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHEEEEHHHHHHHHCCCCCCCCEEEEEEE
GKRIRVQMEPLYAQNKYDVVMV
CCEEEEEECCCCCCCCCCEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]