| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119773599
Identifier: 119773599
GI number: 119773599
Start: 566243
End: 566734
Strand: Direct
Name: 119773599
Synonym: Sama_0459
Alternate gene names: NA
Gene position: 566243-566734 (Clockwise)
Preceding gene: 119773598
Following gene: 119773600
Centisome position: 13.15
GC content: 53.46
Gene sequence:
>492_bases TTGTTACCACAGCGGGAAGCCGAAGGAGAACTGATTGGTATCTATCGCCGCATGCTGGCGGTGATAGTGATGCTGTTACT GCTGGCGGTCGTGGGGATCAGGTATTTTTCCGGCTTGGAGTCCGTTGCATCCCACAGCATGGTGATGGAGCAGGGGCGCT TGCAGAATGTGATATCCATGTCGCGCTCTAAATGGTTGGGGCAGGGGCGGGGTGAAGTACTCAAGTTGGAGTGGGAGCTG CTGGACAGAGACAAACCTGCAGCGCCTGTGCTTATCCATATGAGCGCCAACGGCTGGCCTCAGCCACCCCAGAGAGATGC CATCGGTTGCCGGGCATTGTGGCAGCAGCTGCTGGGTTATGGCACTGAAGGTTTACTCGATGTGTCTTTTAATAGTGGCA GTCGCAGTTGTCACTATTTGGGCGAAGCAGAAAGTCTAATCAGCTACCATTTGGACACAGGAAAAGTGACCTTGGTCAAC CATACTAATTAG
Upstream 100 bases:
>100_bases CATACTTATCGGCATAGTGGCTGGCATTGTGCTCATTCTGGCACTGGGTATCTACCTGCCCATGTGGGACATGCTCAATG TGGTCAAGGGAGGCTGAACC
Downstream 100 bases:
>100_bases CTGTTATATATGAGACTTTTCAAGATGAATTTAGCTGCTACAATGGGGAAATGGACGATTGGGGGCACCTATGAAAGCTA AACAGCAGGGATTTTCACTG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 163; Mature: 163
Protein sequence:
>163_residues MLPQREAEGELIGIYRRMLAVIVMLLLLAVVGIRYFSGLESVASHSMVMEQGRLQNVISMSRSKWLGQGRGEVLKLEWEL LDRDKPAAPVLIHMSANGWPQPPQRDAIGCRALWQQLLGYGTEGLLDVSFNSGSRSCHYLGEAESLISYHLDTGKVTLVN HTN
Sequences:
>Translated_163_residues MLPQREAEGELIGIYRRMLAVIVMLLLLAVVGIRYFSGLESVASHSMVMEQGRLQNVISMSRSKWLGQGRGEVLKLEWEL LDRDKPAAPVLIHMSANGWPQPPQRDAIGCRALWQQLLGYGTEGLLDVSFNSGSRSCHYLGEAESLISYHLDTGKVTLVN HTN >Mature_163_residues MLPQREAEGELIGIYRRMLAVIVMLLLLAVVGIRYFSGLESVASHSMVMEQGRLQNVISMSRSKWLGQGRGEVLKLEWEL LDRDKPAAPVLIHMSANGWPQPPQRDAIGCRALWQQLLGYGTEGLLDVSFNSGSRSCHYLGEAESLISYHLDTGKVTLVN HTN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18146; Mature: 18146
Theoretical pI: Translated: 7.06; Mature: 7.06
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 4.3 %Met (Translated Protein) 5.5 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 4.3 %Met (Mature Protein) 5.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLPQREAEGELIGIYRRMLAVIVMLLLLAVVGIRYFSGLESVASHSMVMEQGRLQNVISM CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SRSKWLGQGRGEVLKLEWELLDRDKPAAPVLIHMSANGWPQPPQRDAIGCRALWQQLLGY HHHHHCCCCCCCEEEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCC GTEGLLDVSFNSGSRSCHYLGEAESLISYHLDTGKVTLVNHTN CCCCEEEEEECCCCCCEEECCHHHHHHHHCCCCCCEEEEECCC >Mature Secondary Structure MLPQREAEGELIGIYRRMLAVIVMLLLLAVVGIRYFSGLESVASHSMVMEQGRLQNVISM CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SRSKWLGQGRGEVLKLEWELLDRDKPAAPVLIHMSANGWPQPPQRDAIGCRALWQQLLGY HHHHHCCCCCCCEEEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCC GTEGLLDVSFNSGSRSCHYLGEAESLISYHLDTGKVTLVNHTN CCCCEEEEEECCCCCCEEECCHHHHHHHHCCCCCCEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA