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The map label for this gene is tdcF [C]

Identifier: 119773404

GI number: 119773404

Start: 302424

End: 302807

Strand: Reverse

Name: tdcF [C]

Synonym: Sama_0263

Alternate gene names: 119773404

Gene position: 302807-302424 (Counterclockwise)

Preceding gene: 119773405

Following gene: 119773403

Centisome position: 7.03

GC content: 55.73

Gene sequence:

>384_bases
ATGGCTGAAAAAACCATTATCGCCACCGACAAGGCTCCTGCGGCTATCGGTACCTATTCCCAGGCCGTAAAGGTCGGCTC
TACCGTGTATCTGTCTGGTCAGATCCCTCTGGATCCCGCCACCATGACCCTGGTCGGCGACGACTTTGAAGCCCAAACAG
TGCAGGTATTTGAAAACCTCAAGGCCGTATGTGAAGCCGCCGGCGGCAGCTTTGCCGACATCGCCAAGCTGAATATCTTC
CTCACTGACCTGTCGAACTTCGCCAAGGTGAATGAGATCATGGGCCGTTATTTCAACGAGCCCTACCCTGCCCGCGCCGC
CATCGGCGTAAAAGAGCTGCCACGTGGCTCACAGGTAGAAATGGATGGGGTGATGGAGCTGTAA

Upstream 100 bases:

>100_bases
CGTATTCACCTTGCCAACGTGATGCGCCGTATCCGGGTTCTGCCCGAGGTGCTGAGAACCTCCCGCAATCGTTAGTCATT
TTCCTATAAGAGAGAACCCT

Downstream 100 bases:

>100_bases
TTGCTTCCACATCTTCAGGGCGCCTCGGCGCCCTTTTGTTTTTTCACGATTTACACAGGAATGATTCCATGAGCCCGGAA
CGCTTTGCCCGCATCAATGA

Product: YjgF-like protein

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 127; Mature: 126

Protein sequence:

>127_residues
MAEKTIIATDKAPAAIGTYSQAVKVGSTVYLSGQIPLDPATMTLVGDDFEAQTVQVFENLKAVCEAAGGSFADIAKLNIF
LTDLSNFAKVNEIMGRYFNEPYPARAAIGVKELPRGSQVEMDGVMEL

Sequences:

>Translated_127_residues
MAEKTIIATDKAPAAIGTYSQAVKVGSTVYLSGQIPLDPATMTLVGDDFEAQTVQVFENLKAVCEAAGGSFADIAKLNIF
LTDLSNFAKVNEIMGRYFNEPYPARAAIGVKELPRGSQVEMDGVMEL
>Mature_126_residues
AEKTIIATDKAPAAIGTYSQAVKVGSTVYLSGQIPLDPATMTLVGDDFEAQTVQVFENLKAVCEAAGGSFADIAKLNIFL
TDLSNFAKVNEIMGRYFNEPYPARAAIGVKELPRGSQVEMDGVMEL

Specific function: Anaerobic degradation of L-threonine to propionate. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=121, Percent_Identity=42.9752066115703, Blast_Score=109, Evalue=6e-25,
Organism=Escherichia coli, GI87082213, Length=124, Percent_Identity=41.9354838709677, Blast_Score=101, Evalue=2e-23,
Organism=Escherichia coli, GI87082396, Length=121, Percent_Identity=42.1487603305785, Blast_Score=95, Evalue=1e-21,
Organism=Escherichia coli, GI1787245, Length=116, Percent_Identity=35.3448275862069, Blast_Score=70, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI71982075, Length=127, Percent_Identity=47.244094488189, Blast_Score=114, Evalue=2e-26,
Organism=Caenorhabditis elegans, GI25148896, Length=127, Percent_Identity=47.244094488189, Blast_Score=114, Evalue=2e-26,
Organism=Caenorhabditis elegans, GI71982068, Length=127, Percent_Identity=47.244094488189, Blast_Score=114, Evalue=2e-26,
Organism=Saccharomyces cerevisiae, GI6322138, Length=118, Percent_Identity=38.9830508474576, Blast_Score=94, Evalue=6e-21,
Organism=Saccharomyces cerevisiae, GI6320899, Length=102, Percent_Identity=39.2156862745098, Blast_Score=84, Evalue=5e-18,
Organism=Drosophila melanogaster, GI19921376, Length=121, Percent_Identity=38.0165289256198, Blast_Score=84, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13565; Mature: 13433

Theoretical pI: Translated: 4.26; Mature: 4.26

Prosite motif: PS01094 UPF0076

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEKTIIATDKAPAAIGTYSQAVKVGSTVYLSGQIPLDPATMTLVGDDFEAQTVQVFENL
CCCCEEEECCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHH
KAVCEAAGGSFADIAKLNIFLTDLSNFAKVNEIMGRYFNEPYPARAAIGVKELPRGSQVE
HHHHHHCCCCCCHHHHHHHEEHHHHHHHHHHHHHHHHCCCCCCCHHHCCHHHCCCCCCCC
MDGVMEL
CCCCCCC
>Mature Secondary Structure 
AEKTIIATDKAPAAIGTYSQAVKVGSTVYLSGQIPLDPATMTLVGDDFEAQTVQVFENL
CCCEEEECCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHH
KAVCEAAGGSFADIAKLNIFLTDLSNFAKVNEIMGRYFNEPYPARAAIGVKELPRGSQVE
HHHHHHCCCCCCHHHHHHHEEHHHHHHHHHHHHHHHHCCCCCCCHHHCCHHHCCCCCCCC
MDGVMEL
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2722750 [H]