| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is exeL [H]
Identifier: 119773318
GI number: 119773318
Start: 206384
End: 207580
Strand: Direct
Name: exeL [H]
Synonym: Sama_0177
Alternate gene names: 119773318
Gene position: 206384-207580 (Clockwise)
Preceding gene: 119773317
Following gene: 119773319
Centisome position: 4.79
GC content: 56.56
Gene sequence:
>1197_bases ATGACAGTGAGTGAAAGGCTATTTATCCGCCTGGGCACCAAGGCTCAGGACAGCTGTTCCTGGCTGATTTGGTCTGAGCA GGAGCAGGAGATTATCGCCTCGGGAGAATTACCGGGCGCCGAGTCTCTCGCCAGCCTGACGGAAAGGGCGGGCAACCGTC CGGTAGACATTCTGGTGCCTGCGTCCAGCATGACCCTGACAGAAATACATTTGCCTGAAAAAGGCCAGCGTCAGGCGCTC AAGGCTTTGCCATTCATGCTGGAAGAAAACATCGCCCAGGACGTGGATGATATGCATTTTGTGGTGGGGAGCCGCGATGG TGAGCGCCTGTCCGTGGCCGCTGTTGCCCACGAGCAGATGCAAACCTGGCTTGGCTGGCTGGCCGACGCTGGTCTGAAGG CGCGCAGGCTGGTACCTGACTGTCTGGCTCTGCCACTGGAAAGCTGTGAATGGGCGGCCATGTTGATGGGGCAGGAGCTC CTGGTGCGTACCGGTAAAGGCTCGGGCCTTAATCTGCCACAGGACTGGTTGCCGGTGGCCTTGCCCATGATGCTTGCCGA TAAAGATACGGCGCCTTCAGTGGCCACTTACAACGACATGAATATCCCCGGCGCCGATGTCAAACCGCAAACCCTGGACC TGCCCATGCTGGTGCTGGCCCGTGGCGTATTGCAGGCGCCGATGAATCTGCTGACCGGCAGCTATAAACCAAAGCGTGAG CTCAGCAAACATCTGTTGCAGTGGAAGAGTGCCCTCATCGTCGTGGCGGTAGCGCTCTTGTTGTCGCTGGTGAACAAGGG ACTGACCATCTACCAGGTTGGCACTCAGGCGGAGGTGCTCAAGGCCGAGAGTGAGGCAATCTACCGTCAGGTTGTGCCCG GTTCGAGTCGTATCGTTAACCTGCGTTCTCAGTTGGACAATGAAGTACGCAAGTTATCCGGTAGCGGCAGCGGTGCTGAA TTTTTCAGCATGCTGCAACGTTTGAAAACGTCTTTTGCGGCCGTGCCTGAATTGAAACCCAACAGCCTGCGTTTTGACAG TGCCCGCAGTGAAATTCGCATGCAGGTGACCGCAAAGGACTATGCCCAAATAGAAAAATTCAAAGAACTGGTGGGCAAAG ATTTTGAGCTGGAAGCCGGTGCCATGAACAGCAGTGACGAGGCAGTCACCAGCACCCTGACCTTGAGGAGTCGCTAA
Upstream 100 bases:
>100_bases GGTAACCATATGGACACCCTGACACGCCAATACGGCGGCCAGCAATAGCGCATGGTGATACAGAATAACAATACAGCCTC CCCAAAGCGGGGGCCGGAGA
Downstream 100 bases:
>100_bases GATGGATAAGCTGAAAGCCTGGTGGGATGGCTTGGCAACCCGGGAGCAGCAACTGGTTGGAGCCGGTGGATTTATGCTCG TTATCGCCGTGTTTTATTTC
Product: general secretion pathway protein L
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 398; Mature: 397
Protein sequence:
>398_residues MTVSERLFIRLGTKAQDSCSWLIWSEQEQEIIASGELPGAESLASLTERAGNRPVDILVPASSMTLTEIHLPEKGQRQAL KALPFMLEENIAQDVDDMHFVVGSRDGERLSVAAVAHEQMQTWLGWLADAGLKARRLVPDCLALPLESCEWAAMLMGQEL LVRTGKGSGLNLPQDWLPVALPMMLADKDTAPSVATYNDMNIPGADVKPQTLDLPMLVLARGVLQAPMNLLTGSYKPKRE LSKHLLQWKSALIVVAVALLLSLVNKGLTIYQVGTQAEVLKAESEAIYRQVVPGSSRIVNLRSQLDNEVRKLSGSGSGAE FFSMLQRLKTSFAAVPELKPNSLRFDSARSEIRMQVTAKDYAQIEKFKELVGKDFELEAGAMNSSDEAVTSTLTLRSR
Sequences:
>Translated_398_residues MTVSERLFIRLGTKAQDSCSWLIWSEQEQEIIASGELPGAESLASLTERAGNRPVDILVPASSMTLTEIHLPEKGQRQAL KALPFMLEENIAQDVDDMHFVVGSRDGERLSVAAVAHEQMQTWLGWLADAGLKARRLVPDCLALPLESCEWAAMLMGQEL LVRTGKGSGLNLPQDWLPVALPMMLADKDTAPSVATYNDMNIPGADVKPQTLDLPMLVLARGVLQAPMNLLTGSYKPKRE LSKHLLQWKSALIVVAVALLLSLVNKGLTIYQVGTQAEVLKAESEAIYRQVVPGSSRIVNLRSQLDNEVRKLSGSGSGAE FFSMLQRLKTSFAAVPELKPNSLRFDSARSEIRMQVTAKDYAQIEKFKELVGKDFELEAGAMNSSDEAVTSTLTLRSR >Mature_397_residues TVSERLFIRLGTKAQDSCSWLIWSEQEQEIIASGELPGAESLASLTERAGNRPVDILVPASSMTLTEIHLPEKGQRQALK ALPFMLEENIAQDVDDMHFVVGSRDGERLSVAAVAHEQMQTWLGWLADAGLKARRLVPDCLALPLESCEWAAMLMGQELL VRTGKGSGLNLPQDWLPVALPMMLADKDTAPSVATYNDMNIPGADVKPQTLDLPMLVLARGVLQAPMNLLTGSYKPKREL SKHLLQWKSALIVVAVALLLSLVNKGLTIYQVGTQAEVLKAESEAIYRQVVPGSSRIVNLRSQLDNEVRKLSGSGSGAEF FSMLQRLKTSFAAVPELKPNSLRFDSARSEIRMQVTAKDYAQIEKFKELVGKDFELEAGAMNSSDEAVTSTLTLRSR
Specific function: Involved in a general secretion pathway (GSP) for the export of proteins [H]
COG id: COG3297
COG function: function code U; Type II secretory pathway, component PulL
Gene ontology:
Cell location: Cell inner membrane (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the GSP L family [H]
Homologues:
Organism=Escherichia coli, GI87082244, Length=360, Percent_Identity=21.6666666666667, Blast_Score=69, Evalue=4e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007812 [H]
Pfam domain/function: PF05134 GspL [H]
EC number: NA
Molecular weight: Translated: 43671; Mature: 43540
Theoretical pI: Translated: 5.34; Mature: 5.34
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTVSERLFIRLGTKAQDSCSWLIWSEQEQEIIASGELPGAESLASLTERAGNRPVDILVP CCCCCEEEEEECCCCCCCCEEEEECCCCHHHHHCCCCCCHHHHHHHHHHHCCCCEEEEEC ASSMTLTEIHLPEKGQRQALKALPFMLEENIAQDVDDMHFVVGSRDGERLSVAAVAHEQM CCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCHHHHEEEEECCCCCEEEHHHHHHHHH QTWLGWLADAGLKARRLVPDCLALPLESCEWAAMLMGQELLVRTGKGSGLNLPQDWLPVA HHHHHHHHHCCCCHHHCCHHHHHCCCCCCHHHHHHHCCHHHEECCCCCCCCCCHHHHHHH LPMMLADKDTAPSVATYNDMNIPGADVKPQTLDLPMLVLARGVLQAPMNLLTGSYKPKRE HHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHH LSKHLLQWKSALIVVAVALLLSLVNKGLTIYQVGTQAEVLKAESEAIYRQVVPGSSRIVN HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHCCCCHHEEH LRSQLDNEVRKLSGSGSGAEFFSMLQRLKTSFAAVPELKPNSLRFDSARSEIRMQVTAKD HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCEEEEECHHH YAQIEKFKELVGKDFELEAGAMNSSDEAVTSTLTLRSR HHHHHHHHHHHCCCCEECCCCCCCCCHHHHHHEEECCC >Mature Secondary Structure TVSERLFIRLGTKAQDSCSWLIWSEQEQEIIASGELPGAESLASLTERAGNRPVDILVP CCCCEEEEEECCCCCCCCEEEEECCCCHHHHHCCCCCCHHHHHHHHHHHCCCCEEEEEC ASSMTLTEIHLPEKGQRQALKALPFMLEENIAQDVDDMHFVVGSRDGERLSVAAVAHEQM CCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCHHHHEEEEECCCCCEEEHHHHHHHHH QTWLGWLADAGLKARRLVPDCLALPLESCEWAAMLMGQELLVRTGKGSGLNLPQDWLPVA HHHHHHHHHCCCCHHHCCHHHHHCCCCCCHHHHHHHCCHHHEECCCCCCCCCCHHHHHHH LPMMLADKDTAPSVATYNDMNIPGADVKPQTLDLPMLVLARGVLQAPMNLLTGSYKPKRE HHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHH LSKHLLQWKSALIVVAVALLLSLVNKGLTIYQVGTQAEVLKAESEAIYRQVVPGSSRIVN HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHCCCCHHEEH LRSQLDNEVRKLSGSGSGAEFFSMLQRLKTSFAAVPELKPNSLRFDSARSEIRMQVTAKD HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCEEEEECHHH YAQIEKFKELVGKDFELEAGAMNSSDEAVTSTLTLRSR HHHHHHHHHHHCCCCEECCCCCCCCCHHHHHHEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8407845 [H]