Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

Click here to switch to the map view.

The map label for this gene is exeL [H]

Identifier: 119773318

GI number: 119773318

Start: 206384

End: 207580

Strand: Direct

Name: exeL [H]

Synonym: Sama_0177

Alternate gene names: 119773318

Gene position: 206384-207580 (Clockwise)

Preceding gene: 119773317

Following gene: 119773319

Centisome position: 4.79

GC content: 56.56

Gene sequence:

>1197_bases
ATGACAGTGAGTGAAAGGCTATTTATCCGCCTGGGCACCAAGGCTCAGGACAGCTGTTCCTGGCTGATTTGGTCTGAGCA
GGAGCAGGAGATTATCGCCTCGGGAGAATTACCGGGCGCCGAGTCTCTCGCCAGCCTGACGGAAAGGGCGGGCAACCGTC
CGGTAGACATTCTGGTGCCTGCGTCCAGCATGACCCTGACAGAAATACATTTGCCTGAAAAAGGCCAGCGTCAGGCGCTC
AAGGCTTTGCCATTCATGCTGGAAGAAAACATCGCCCAGGACGTGGATGATATGCATTTTGTGGTGGGGAGCCGCGATGG
TGAGCGCCTGTCCGTGGCCGCTGTTGCCCACGAGCAGATGCAAACCTGGCTTGGCTGGCTGGCCGACGCTGGTCTGAAGG
CGCGCAGGCTGGTACCTGACTGTCTGGCTCTGCCACTGGAAAGCTGTGAATGGGCGGCCATGTTGATGGGGCAGGAGCTC
CTGGTGCGTACCGGTAAAGGCTCGGGCCTTAATCTGCCACAGGACTGGTTGCCGGTGGCCTTGCCCATGATGCTTGCCGA
TAAAGATACGGCGCCTTCAGTGGCCACTTACAACGACATGAATATCCCCGGCGCCGATGTCAAACCGCAAACCCTGGACC
TGCCCATGCTGGTGCTGGCCCGTGGCGTATTGCAGGCGCCGATGAATCTGCTGACCGGCAGCTATAAACCAAAGCGTGAG
CTCAGCAAACATCTGTTGCAGTGGAAGAGTGCCCTCATCGTCGTGGCGGTAGCGCTCTTGTTGTCGCTGGTGAACAAGGG
ACTGACCATCTACCAGGTTGGCACTCAGGCGGAGGTGCTCAAGGCCGAGAGTGAGGCAATCTACCGTCAGGTTGTGCCCG
GTTCGAGTCGTATCGTTAACCTGCGTTCTCAGTTGGACAATGAAGTACGCAAGTTATCCGGTAGCGGCAGCGGTGCTGAA
TTTTTCAGCATGCTGCAACGTTTGAAAACGTCTTTTGCGGCCGTGCCTGAATTGAAACCCAACAGCCTGCGTTTTGACAG
TGCCCGCAGTGAAATTCGCATGCAGGTGACCGCAAAGGACTATGCCCAAATAGAAAAATTCAAAGAACTGGTGGGCAAAG
ATTTTGAGCTGGAAGCCGGTGCCATGAACAGCAGTGACGAGGCAGTCACCAGCACCCTGACCTTGAGGAGTCGCTAA

Upstream 100 bases:

>100_bases
GGTAACCATATGGACACCCTGACACGCCAATACGGCGGCCAGCAATAGCGCATGGTGATACAGAATAACAATACAGCCTC
CCCAAAGCGGGGGCCGGAGA

Downstream 100 bases:

>100_bases
GATGGATAAGCTGAAAGCCTGGTGGGATGGCTTGGCAACCCGGGAGCAGCAACTGGTTGGAGCCGGTGGATTTATGCTCG
TTATCGCCGTGTTTTATTTC

Product: general secretion pathway protein L

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 398; Mature: 397

Protein sequence:

>398_residues
MTVSERLFIRLGTKAQDSCSWLIWSEQEQEIIASGELPGAESLASLTERAGNRPVDILVPASSMTLTEIHLPEKGQRQAL
KALPFMLEENIAQDVDDMHFVVGSRDGERLSVAAVAHEQMQTWLGWLADAGLKARRLVPDCLALPLESCEWAAMLMGQEL
LVRTGKGSGLNLPQDWLPVALPMMLADKDTAPSVATYNDMNIPGADVKPQTLDLPMLVLARGVLQAPMNLLTGSYKPKRE
LSKHLLQWKSALIVVAVALLLSLVNKGLTIYQVGTQAEVLKAESEAIYRQVVPGSSRIVNLRSQLDNEVRKLSGSGSGAE
FFSMLQRLKTSFAAVPELKPNSLRFDSARSEIRMQVTAKDYAQIEKFKELVGKDFELEAGAMNSSDEAVTSTLTLRSR

Sequences:

>Translated_398_residues
MTVSERLFIRLGTKAQDSCSWLIWSEQEQEIIASGELPGAESLASLTERAGNRPVDILVPASSMTLTEIHLPEKGQRQAL
KALPFMLEENIAQDVDDMHFVVGSRDGERLSVAAVAHEQMQTWLGWLADAGLKARRLVPDCLALPLESCEWAAMLMGQEL
LVRTGKGSGLNLPQDWLPVALPMMLADKDTAPSVATYNDMNIPGADVKPQTLDLPMLVLARGVLQAPMNLLTGSYKPKRE
LSKHLLQWKSALIVVAVALLLSLVNKGLTIYQVGTQAEVLKAESEAIYRQVVPGSSRIVNLRSQLDNEVRKLSGSGSGAE
FFSMLQRLKTSFAAVPELKPNSLRFDSARSEIRMQVTAKDYAQIEKFKELVGKDFELEAGAMNSSDEAVTSTLTLRSR
>Mature_397_residues
TVSERLFIRLGTKAQDSCSWLIWSEQEQEIIASGELPGAESLASLTERAGNRPVDILVPASSMTLTEIHLPEKGQRQALK
ALPFMLEENIAQDVDDMHFVVGSRDGERLSVAAVAHEQMQTWLGWLADAGLKARRLVPDCLALPLESCEWAAMLMGQELL
VRTGKGSGLNLPQDWLPVALPMMLADKDTAPSVATYNDMNIPGADVKPQTLDLPMLVLARGVLQAPMNLLTGSYKPKREL
SKHLLQWKSALIVVAVALLLSLVNKGLTIYQVGTQAEVLKAESEAIYRQVVPGSSRIVNLRSQLDNEVRKLSGSGSGAEF
FSMLQRLKTSFAAVPELKPNSLRFDSARSEIRMQVTAKDYAQIEKFKELVGKDFELEAGAMNSSDEAVTSTLTLRSR

Specific function: Involved in a general secretion pathway (GSP) for the export of proteins [H]

COG id: COG3297

COG function: function code U; Type II secretory pathway, component PulL

Gene ontology:

Cell location: Cell inner membrane (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP L family [H]

Homologues:

Organism=Escherichia coli, GI87082244, Length=360, Percent_Identity=21.6666666666667, Blast_Score=69, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007812 [H]

Pfam domain/function: PF05134 GspL [H]

EC number: NA

Molecular weight: Translated: 43671; Mature: 43540

Theoretical pI: Translated: 5.34; Mature: 5.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVSERLFIRLGTKAQDSCSWLIWSEQEQEIIASGELPGAESLASLTERAGNRPVDILVP
CCCCCEEEEEECCCCCCCCEEEEECCCCHHHHHCCCCCCHHHHHHHHHHHCCCCEEEEEC
ASSMTLTEIHLPEKGQRQALKALPFMLEENIAQDVDDMHFVVGSRDGERLSVAAVAHEQM
CCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCHHHHEEEEECCCCCEEEHHHHHHHHH
QTWLGWLADAGLKARRLVPDCLALPLESCEWAAMLMGQELLVRTGKGSGLNLPQDWLPVA
HHHHHHHHHCCCCHHHCCHHHHHCCCCCCHHHHHHHCCHHHEECCCCCCCCCCHHHHHHH
LPMMLADKDTAPSVATYNDMNIPGADVKPQTLDLPMLVLARGVLQAPMNLLTGSYKPKRE
HHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHH
LSKHLLQWKSALIVVAVALLLSLVNKGLTIYQVGTQAEVLKAESEAIYRQVVPGSSRIVN
HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHCCCCHHEEH
LRSQLDNEVRKLSGSGSGAEFFSMLQRLKTSFAAVPELKPNSLRFDSARSEIRMQVTAKD
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCEEEEECHHH
YAQIEKFKELVGKDFELEAGAMNSSDEAVTSTLTLRSR
HHHHHHHHHHHCCCCEECCCCCCCCCHHHHHHEEECCC
>Mature Secondary Structure 
TVSERLFIRLGTKAQDSCSWLIWSEQEQEIIASGELPGAESLASLTERAGNRPVDILVP
CCCCEEEEEECCCCCCCCEEEEECCCCHHHHHCCCCCCHHHHHHHHHHHCCCCEEEEEC
ASSMTLTEIHLPEKGQRQALKALPFMLEENIAQDVDDMHFVVGSRDGERLSVAAVAHEQM
CCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCHHHHEEEEECCCCCEEEHHHHHHHHH
QTWLGWLADAGLKARRLVPDCLALPLESCEWAAMLMGQELLVRTGKGSGLNLPQDWLPVA
HHHHHHHHHCCCCHHHCCHHHHHCCCCCCHHHHHHHCCHHHEECCCCCCCCCCHHHHHHH
LPMMLADKDTAPSVATYNDMNIPGADVKPQTLDLPMLVLARGVLQAPMNLLTGSYKPKRE
HHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHH
LSKHLLQWKSALIVVAVALLLSLVNKGLTIYQVGTQAEVLKAESEAIYRQVVPGSSRIVN
HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHCCCCHHEEH
LRSQLDNEVRKLSGSGSGAEFFSMLQRLKTSFAAVPELKPNSLRFDSARSEIRMQVTAKD
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCEEEEECHHH
YAQIEKFKELVGKDFELEAGAMNSSDEAVTSTLTLRSR
HHHHHHHHHHHCCCCEECCCCCCCCCHHHHHHEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8407845 [H]