| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119773278
Identifier: 119773278
GI number: 119773278
Start: 152768
End: 153964
Strand: Direct
Name: 119773278
Synonym: Sama_0136
Alternate gene names: NA
Gene position: 152768-153964 (Clockwise)
Preceding gene: 119773277
Following gene: 119773283
Centisome position: 3.55
GC content: 52.21
Gene sequence:
>1197_bases ATGGCCGATAGGGCATCTGAAGCCGAATTGATAAAGTTGCCTGTCAGCAAACTCACCCGAGGCATGTTTGTGGCGGCTAT TGAAAATAACGGCAAGGTCGCCGTTGCCAATGCCGGGCAAATCAAGAGCCGGGAGACCATCGCCAAGCTGGTTAAAAGCG GTATTCATCATGTGTGGGTGGATGCAGAGCGCTCCTCCGACGAATCCGGTCTCAAACCCAAGTCTGCCCAGGGCAGTGCA GCGCCAGCTGCCGGTGCTGTTCGTCCTTCTCGCGCCAACCGCGACCTGCGTCAAACCCAGGCCAAGAAACTCCTCCATGA AGCCAAGGAACTTATCCGCAAGGTATTGTCCGAAACCTTCGAAGGCAAAGCCATTGAAGTAAAGCCTTTTGAGGCGCTGG CCGACAATATGATTGAGTCAATCATGCTTGATGATGATGCCCTCAAATGTGTGTCGGCGCTGCGTGACAAAGATGCCTAT CTGCTTGAACATTCAGTGAATGTAGCCTTTCTGTTGGTCACCTTTGGCAAGTATTTGAAGCTCGATCGTGAAACCTTAAA GCAGATGGCGGTGGGCGGTGTGCTGCACGACATAGGTAAAATCAAGGTTGATAACAAGATTTTGCATAAGCCCGGCAAGC TGACACCGGAAGAATTTGAGCACATGAAACTGCACCAGTTTTATGCGATGGACATTATGTCCGAAGCCTCGGCGCTGTCG CAGATTTCAAAAGATGTATGCCTGATGCACCATGAAAAGCTCGATGGTCGCGGTTATCCCCGTGGTTTGAAGGGCGATGA AATCCCACTCCACGGCCGCATGTCCTGTATCGTGGATATTTTCGATGCCCTGACCGCCACCCGCTGCTACAAAGAGGCCA TGAGCCCTGCGGCCGCCTTTAAGATCTTGCTGAGTTTGACGCCTTTCCATCTGGACACCGATCTGGTGTACGAATTTATC CGCTGTATCGGTGTCTATCCGGTGGGATCTCTGGTGGAGCTGTCCGACGGGCGTGTGGGCATTGTCTGGGAGTCCAAAGA CAGGGATGCCCTGAGCCCGGTAGTGAAATGTTTTTATTCACTCAAGCACAAACGCTACACCGAAGTGAATTTTGTCGACC TGCTCAAGTCAGATCTGAACATAGAGCGGGGCGTCTCCCCATCCAGCCTGGATGTAGACCCCAAGCCATTTTACTGA
Upstream 100 bases:
>100_bases CACAAAATGTTAATGTGGTAGCCAGGGCGTCGGGTGGGCTGCGTTACTGTGGCTTAACATTATACTCAGGCTTTCATTGT TGATGTTGGGGGTGAGTGAC
Downstream 100 bases:
>100_bases GAATCGAAGCCGCCCAACCCAGAGTTTAAACTGTGGCACCACCGCAAACAGGGCAATTGGGCTGGCGTGGCAGTATCATC TGGCGCATCTCCATCGTCAT
Product: putative metal dependent phosphohydrolase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 398; Mature: 397
Protein sequence:
>398_residues MADRASEAELIKLPVSKLTRGMFVAAIENNGKVAVANAGQIKSRETIAKLVKSGIHHVWVDAERSSDESGLKPKSAQGSA APAAGAVRPSRANRDLRQTQAKKLLHEAKELIRKVLSETFEGKAIEVKPFEALADNMIESIMLDDDALKCVSALRDKDAY LLEHSVNVAFLLVTFGKYLKLDRETLKQMAVGGVLHDIGKIKVDNKILHKPGKLTPEEFEHMKLHQFYAMDIMSEASALS QISKDVCLMHHEKLDGRGYPRGLKGDEIPLHGRMSCIVDIFDALTATRCYKEAMSPAAAFKILLSLTPFHLDTDLVYEFI RCIGVYPVGSLVELSDGRVGIVWESKDRDALSPVVKCFYSLKHKRYTEVNFVDLLKSDLNIERGVSPSSLDVDPKPFY
Sequences:
>Translated_398_residues MADRASEAELIKLPVSKLTRGMFVAAIENNGKVAVANAGQIKSRETIAKLVKSGIHHVWVDAERSSDESGLKPKSAQGSA APAAGAVRPSRANRDLRQTQAKKLLHEAKELIRKVLSETFEGKAIEVKPFEALADNMIESIMLDDDALKCVSALRDKDAY LLEHSVNVAFLLVTFGKYLKLDRETLKQMAVGGVLHDIGKIKVDNKILHKPGKLTPEEFEHMKLHQFYAMDIMSEASALS QISKDVCLMHHEKLDGRGYPRGLKGDEIPLHGRMSCIVDIFDALTATRCYKEAMSPAAAFKILLSLTPFHLDTDLVYEFI RCIGVYPVGSLVELSDGRVGIVWESKDRDALSPVVKCFYSLKHKRYTEVNFVDLLKSDLNIERGVSPSSLDVDPKPFY >Mature_397_residues ADRASEAELIKLPVSKLTRGMFVAAIENNGKVAVANAGQIKSRETIAKLVKSGIHHVWVDAERSSDESGLKPKSAQGSAA PAAGAVRPSRANRDLRQTQAKKLLHEAKELIRKVLSETFEGKAIEVKPFEALADNMIESIMLDDDALKCVSALRDKDAYL LEHSVNVAFLLVTFGKYLKLDRETLKQMAVGGVLHDIGKIKVDNKILHKPGKLTPEEFEHMKLHQFYAMDIMSEASALSQ ISKDVCLMHHEKLDGRGYPRGLKGDEIPLHGRMSCIVDIFDALTATRCYKEAMSPAAAFKILLSLTPFHLDTDLVYEFIR CIGVYPVGSLVELSDGRVGIVWESKDRDALSPVVKCFYSLKHKRYTEVNFVDLLKSDLNIERGVSPSSLDVDPKPFY
Specific function: Unknown
COG id: COG2206
COG function: function code T; HD-GYP domain
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 HD domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001054 - InterPro: IPR000160 - InterPro: IPR003607 [H]
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44162; Mature: 44030
Theoretical pI: Translated: 7.91; Mature: 7.91
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MADRASEAELIKLPVSKLTRGMFVAAIENNGKVAVANAGQIKSRETIAKLVKSGIHHVWV CCCCCCCCHHEECCHHHHCCCEEEEEEECCCEEEEECCCCCCHHHHHHHHHHCCCCEEEE DAERSSDESGLKPKSAQGSAAPAAGAVRPSRANRDLRQTQAKKLLHEAKELIRKVLSETF ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC EGKAIEVKPFEALADNMIESIMLDDDALKCVSALRDKDAYLLEHSVNVAFLLVTFGKYLK CCCEEEECCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCEEHHHCCCHHHHHHHHHHHHH LDRETLKQMAVGGVLHDIGKIKVDNKILHKPGKLTPEEFEHMKLHQFYAMDIMSEASALS HHHHHHHHHHHHHHHHHHCCEEECCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH QISKDVCLMHHEKLDGRGYPRGLKGDEIPLHGRMSCIVDIFDALTATRCYKEAMSPAAAF HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHH KILLSLTPFHLDTDLVYEFIRCIGVYPVGSLVELSDGRVGIVWESKDRDALSPVVKCFYS HHHHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEECCCEEEEEECCCCCHHHHHHHHHHHH LKHKRYTEVNFVDLLKSDLNIERGVSPSSLDVDPKPFY HHHCCCCCHHHHHHHHHHCCHHCCCCCCCCCCCCCCCC >Mature Secondary Structure ADRASEAELIKLPVSKLTRGMFVAAIENNGKVAVANAGQIKSRETIAKLVKSGIHHVWV CCCCCCCHHEECCHHHHCCCEEEEEEECCCEEEEECCCCCCHHHHHHHHHHCCCCEEEE DAERSSDESGLKPKSAQGSAAPAAGAVRPSRANRDLRQTQAKKLLHEAKELIRKVLSETF ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC EGKAIEVKPFEALADNMIESIMLDDDALKCVSALRDKDAYLLEHSVNVAFLLVTFGKYLK CCCEEEECCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCEEHHHCCCHHHHHHHHHHHHH LDRETLKQMAVGGVLHDIGKIKVDNKILHKPGKLTPEEFEHMKLHQFYAMDIMSEASALS HHHHHHHHHHHHHHHHHHCCEEECCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH QISKDVCLMHHEKLDGRGYPRGLKGDEIPLHGRMSCIVDIFDALTATRCYKEAMSPAAAF HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHH KILLSLTPFHLDTDLVYEFIRCIGVYPVGSLVELSDGRVGIVWESKDRDALSPVVKCFYS HHHHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEECCCEEEEEECCCCCHHHHHHHHHHHH LKHKRYTEVNFVDLLKSDLNIERGVSPSSLDVDPKPFY HHHCCCCCHHHHHHHHHHCCHHCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9537320 [H]