| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is mtnC
Identifier: 119773216
GI number: 119773216
Start: 79435
End: 80115
Strand: Reverse
Name: mtnC
Synonym: Sama_0074
Alternate gene names: 119773216
Gene position: 80115-79435 (Counterclockwise)
Preceding gene: 119773219
Following gene: 119773215
Centisome position: 1.86
GC content: 52.42
Gene sequence:
>681_bases ATGGGTATCAGAGCCATAGTCGTAGACACCGCCGGCACCACCACGGATCTCAACTTTATTCAGCAAACCCTGTTCCCTTA CTCCGCCAAAGTCATGGCCGATTTTCTGCGCGAACATCAGCACAATCCATTGGTGGACTATTGCATCGGCGATGTGCGTG ATATCGCCCTCGAAACCGATGCCGACATCGATCGAGTGGCCGAGATTTTGGTGCAGTGGATTGCCGAAGACCGTAAGGTG ACGCCGCTGAAAACCCTCCAGGGCCTGATTTGGAAGCAGGGTTATGCCAACGATGAGTTCAAGGGACACATTTACCCTGA CTTTATCGATGCCATAAAAACCTATCGTGCCCAGGGTTTACGGGTCTACAGCTTTTCTTCAGGCTCAGTGGATGCCCAAA AGCTGCTGTTCAGCCACAGCGACAGCGGCGATCTGACCGAGTTGTTCAATGGCCACTTCGATACCCGCACCGGCAACAAG CTCGACAAACAGGCCTATGCCAACATTGTTAACACCATCAGCCTGACACCAAGGCAGATCCTCTTTGTTTCCGATGTGGT TGAAGAGCTGAAAGCCGCCGAAGCCGCTGGCATGATCACGTGCCAAATGGTGCGCGAACCCTCTCAGCGCACCGGTAAGT ACCGGATTATTCAGAGCTTCAGCGAACTTAATTTCGAATAA
Upstream 100 bases:
>100_bases CAACTGACCGAATTCTCTGGCAAAGGGGCGCAATTCACTTTAGGATCTGCCTGCATCTTGGGCACTGTCTTTTGGCAGCA GTTAGTGGAGTATCAATATC
Downstream 100 bases:
>100_bases GTTCATGGTTCTGAAAACGCCCCGCACAGCGGGGCGTTTTTGTTGTTCTTGAGCACCGGGCAGACCCCTGTTAAGCTCGA ATTTTGTTAAACAATCGTTT
Product: HAD-superfamily hydrolase, subfamily IA, variant 1 family protein
Products: NA
Alternate protein names: 2,3-diketo-5-methylthio-1-phosphopentane phosphatase
Number of amino acids: Translated: 226; Mature: 225
Protein sequence:
>226_residues MGIRAIVVDTAGTTTDLNFIQQTLFPYSAKVMADFLREHQHNPLVDYCIGDVRDIALETDADIDRVAEILVQWIAEDRKV TPLKTLQGLIWKQGYANDEFKGHIYPDFIDAIKTYRAQGLRVYSFSSGSVDAQKLLFSHSDSGDLTELFNGHFDTRTGNK LDKQAYANIVNTISLTPRQILFVSDVVEELKAAEAAGMITCQMVREPSQRTGKYRIIQSFSELNFE
Sequences:
>Translated_226_residues MGIRAIVVDTAGTTTDLNFIQQTLFPYSAKVMADFLREHQHNPLVDYCIGDVRDIALETDADIDRVAEILVQWIAEDRKV TPLKTLQGLIWKQGYANDEFKGHIYPDFIDAIKTYRAQGLRVYSFSSGSVDAQKLLFSHSDSGDLTELFNGHFDTRTGNK LDKQAYANIVNTISLTPRQILFVSDVVEELKAAEAAGMITCQMVREPSQRTGKYRIIQSFSELNFE >Mature_225_residues GIRAIVVDTAGTTTDLNFIQQTLFPYSAKVMADFLREHQHNPLVDYCIGDVRDIALETDADIDRVAEILVQWIAEDRKVT PLKTLQGLIWKQGYANDEFKGHIYPDFIDAIKTYRAQGLRVYSFSSGSVDAQKLLFSHSDSGDLTELFNGHFDTRTGNKL DKQAYANIVNTISLTPRQILFVSDVVEELKAAEAAGMITCQMVREPSQRTGKYRIIQSFSELNFE
Specific function: Bifunctional enzyme that catalyzes the enolization of 2,3-diketo-5-methylthiopentyl-1-phosphate (DK-MTP-1-P) into the intermediate 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate (HK-MTPenyl-1-P), which is then dephosphorylated to form the acireductone
COG id: COG4229
COG function: function code C; Predicted enolase-phosphatase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the HAD-like hydrolase superfamily. MasA/mtnC family
Homologues:
Organism=Homo sapiens, GI10864017, Length=247, Percent_Identity=34.0080971659919, Blast_Score=146, Evalue=1e-35, Organism=Caenorhabditis elegans, GI115533232, Length=215, Percent_Identity=38.6046511627907, Blast_Score=157, Evalue=3e-39, Organism=Saccharomyces cerevisiae, GI6320797, Length=229, Percent_Identity=33.6244541484716, Blast_Score=110, Evalue=2e-25, Organism=Drosophila melanogaster, GI281360080, Length=238, Percent_Identity=37.8151260504202, Blast_Score=171, Evalue=5e-43, Organism=Drosophila melanogaster, GI24644163, Length=238, Percent_Identity=37.8151260504202, Blast_Score=171, Evalue=5e-43,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): MTNC_SHEAM (A1S1N0)
Other databases:
- EMBL: CP000507 - RefSeq: YP_925956.1 - ProteinModelPortal: A1S1N0 - SMR: A1S1N0 - STRING: A1S1N0 - GeneID: 4602331 - GenomeReviews: CP000507_GR - KEGG: saz:Sama_0074 - NMPDR: fig|326297.7.peg.68 - eggNOG: COG4229 - HOGENOM: HBG294242 - OMA: TTDLNFI - PhylomeDB: A1S1N0 - ProtClustDB: CLSK866737 - HAMAP: MF_01681 - InterPro: IPR005834 - InterPro: IPR010041 - InterPro: IPR023214 - InterPro: IPR006439 - InterPro: IPR005833 - Gene3D: G3DSA:3.40.50.1000 - PANTHER: PTHR20371 - PRINTS: PR00413 - TIGRFAMs: TIGR01691 - TIGRFAMs: TIGR01549
Pfam domain/function: PF00702 Hydrolase; SSF56784 SSF56784
EC number: =3.1.3.77
Molecular weight: Translated: 25505; Mature: 25374
Theoretical pI: Translated: 4.94; Mature: 4.94
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGIRAIVVDTAGTTTDLNFIQQTLFPYSAKVMADFLREHQHNPLVDYCIGDVRDIALETD CCCEEEEEECCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCC ADIDRVAEILVQWIAEDRKVTPLKTLQGLIWKQGYANDEFKGHIYPDFIDAIKTYRAQGL CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCE RVYSFSSGSVDAQKLLFSHSDSGDLTELFNGHFDTRTGNKLDKQAYANIVNTISLTPRQI EEEEECCCCCHHHHHHHHCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHH LFVSDVVEELKAAEAAGMITCQMVREPSQRTGKYRIIQSFSELNFE HHHHHHHHHHHHHHHHCHHHHHHHHCCHHHCCHHHHHHHHHHCCCC >Mature Secondary Structure GIRAIVVDTAGTTTDLNFIQQTLFPYSAKVMADFLREHQHNPLVDYCIGDVRDIALETD CCEEEEEECCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCC ADIDRVAEILVQWIAEDRKVTPLKTLQGLIWKQGYANDEFKGHIYPDFIDAIKTYRAQGL CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCE RVYSFSSGSVDAQKLLFSHSDSGDLTELFNGHFDTRTGNKLDKQAYANIVNTISLTPRQI EEEEECCCCCHHHHHHHHCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHH LFVSDVVEELKAAEAAGMITCQMVREPSQRTGKYRIIQSFSELNFE HHHHHHHHHHHHHHHHCHHHHHHHHCCHHHCCHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA