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The map label for this gene is ybgJ [H]

Identifier: 119773165

GI number: 119773165

Start: 21420

End: 22082

Strand: Reverse

Name: ybgJ [H]

Synonym: Sama_0023

Alternate gene names: 119773165

Gene position: 22082-21420 (Counterclockwise)

Preceding gene: 119773167

Following gene: 119773164

Centisome position: 0.51

GC content: 54.0

Gene sequence:

>663_bases
ATGAAGTCCCTATCTCCCCAAATATCTGTGGTGGGTGAGCATCAGGTATTCCTCGGCTTACCGCTTGTGTCAGACCCTGA
GCTCTGTCTGCATACCCAGAGCCGTATCTGGCAACTGGCTAATCATTGTCGGGATCGAGACGGCGTGTTGGAAACTGTGC
CGGGTATGAACAACCTGACGTTAAGACTGAGTGACAATCAAGACCCCGAACACTGGTGCCGCTGGTTAGAGGCCGAGTTT
CAACGCACCACTGGTATAGATTTTCCCATAGGGCGCGAGCATATCATCCCCGTCAGTTACGGCGGAGAAGATGGCCCCGA
CCTACAGTCGGTGGCCAGTCACCACGGGCTGGGTAGCCGGGACATCATTCGTCTCCACACCCAAGGCGATTACCGGGTCC
TCTTTATCGGATTCTTACCCGGATTTCCCTACCTCAGTGGCCTGCCAAATGCGCTACACACTCCCAGACTCGCCACACCA
AGACAAGCAGTACCTGCAGGCAGTGTCGGAATAGGTGGCACTCAAACAGGCATTTATCCCTGCAAGGCTCCCGGCGGTTG
GCACCTTATAGGTAAAACTCATACTGAACTATTTGATCCCACCAGCGATTCCCCTTGCCTGCTATCGCCAGGTGACCGGG
TTATTTTTGTTGAGGATAGGTAA

Upstream 100 bases:

>100_bases
TAACAAACACCAAATAAAACAACATTCATGCATCAATTTATTGACACTGGTGGGGGCTTTTTTTAGCTTCAGAAGATGTC
TGGCTTACGGAATATTGCCC

Downstream 100 bases:

>100_bases
GATGCTTGAAGTGGTAATGGCGGGCATTCAAACCACGGTGCAGGATCTCGGCCGAACCGGCGTGGCGCATCTTGGACTGC
CACGCAGTGGCGCGCTGGAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 220; Mature: 220

Protein sequence:

>220_residues
MKSLSPQISVVGEHQVFLGLPLVSDPELCLHTQSRIWQLANHCRDRDGVLETVPGMNNLTLRLSDNQDPEHWCRWLEAEF
QRTTGIDFPIGREHIIPVSYGGEDGPDLQSVASHHGLGSRDIIRLHTQGDYRVLFIGFLPGFPYLSGLPNALHTPRLATP
RQAVPAGSVGIGGTQTGIYPCKAPGGWHLIGKTHTELFDPTSDSPCLLSPGDRVIFVEDR

Sequences:

>Translated_220_residues
MKSLSPQISVVGEHQVFLGLPLVSDPELCLHTQSRIWQLANHCRDRDGVLETVPGMNNLTLRLSDNQDPEHWCRWLEAEF
QRTTGIDFPIGREHIIPVSYGGEDGPDLQSVASHHGLGSRDIIRLHTQGDYRVLFIGFLPGFPYLSGLPNALHTPRLATP
RQAVPAGSVGIGGTQTGIYPCKAPGGWHLIGKTHTELFDPTSDSPCLLSPGDRVIFVEDR
>Mature_220_residues
MKSLSPQISVVGEHQVFLGLPLVSDPELCLHTQSRIWQLANHCRDRDGVLETVPGMNNLTLRLSDNQDPEHWCRWLEAEF
QRTTGIDFPIGREHIIPVSYGGEDGPDLQSVASHHGLGSRDIIRLHTQGDYRVLFIGFLPGFPYLSGLPNALHTPRLATP
RQAVPAGSVGIGGTQTGIYPCKAPGGWHLIGKTHTELFDPTSDSPCLLSPGDRVIFVEDR

Specific function: Unknown

COG id: COG2049

COG function: function code E; Allophanate hydrolase subunit 1

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis ycsJ and yeast urea amidolyase (DUR1,2) [H]

Homologues:

Organism=Escherichia coli, GI1786929, Length=216, Percent_Identity=47.6851851851852, Blast_Score=189, Evalue=1e-49,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003833
- InterPro:   IPR020899
- InterPro:   IPR010016
- InterPro:   IPR002130 [H]

Pfam domain/function: PF02682 AHS1 [H]

EC number: NA

Molecular weight: Translated: 24198; Mature: 24198

Theoretical pI: Translated: 6.27; Mature: 6.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSLSPQISVVGEHQVFLGLPLVSDPELCLHTQSRIWQLANHCRDRDGVLETVPGMNNLT
CCCCCCCEEEEECCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCEE
LRLSDNQDPEHWCRWLEAEFQRTTGIDFPIGREHIIPVSYGGEDGPDLQSVASHHGLGSR
EEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHCCCCCC
DIIRLHTQGDYRVLFIGFLPGFPYLSGLPNALHTPRLATPRQAVPAGSVGIGGTQTGIYP
CEEEEEECCCEEEEEEECCCCCHHHHCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEE
CKAPGGWHLIGKTHTELFDPTSDSPCLLSPGDRVIFVEDR
CCCCCCEEEECCCCHHHCCCCCCCCEEECCCCEEEEEECC
>Mature Secondary Structure
MKSLSPQISVVGEHQVFLGLPLVSDPELCLHTQSRIWQLANHCRDRDGVLETVPGMNNLT
CCCCCCCEEEEECCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCEE
LRLSDNQDPEHWCRWLEAEFQRTTGIDFPIGREHIIPVSYGGEDGPDLQSVASHHGLGSR
EEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHCCCCCC
DIIRLHTQGDYRVLFIGFLPGFPYLSGLPNALHTPRLATPRQAVPAGSVGIGGTQTGIYP
CEEEEEECCCEEEEEEECCCCCHHHHCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEE
CKAPGGWHLIGKTHTELFDPTSDSPCLLSPGDRVIFVEDR
CCCCCCEEEECCCCHHHCCCCCCCCEEECCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]