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The map label for this gene is yodF [H]

Identifier: 119718825

GI number: 119718825

Start: 4882600

End: 4884243

Strand: Reverse

Name: yodF [H]

Synonym: Noca_4608

Alternate gene names: 119718825

Gene position: 4884243-4882600 (Counterclockwise)

Preceding gene: 119718826

Following gene: 119718824

Centisome position: 97.96

GC content: 68.98

Gene sequence:

>1644_bases
GTGATCGCGGACGTCAACGGCGTCGTCCTCGGCGTCTTCGTCTTCTTGTTCCTCCTGGTCACGGTCCTCGGGTTCGCCGC
CGCCCGCTGGCGCCGCGCGCAGTCGCTCGACAGCCTGGACGAATGGGGTCTCGGCGGCCGCGGCTTCGGCACCTTCATCG
CCTGGTTCCTCATCGGCGGCGACATCTACACGGCGTACACCTTCATCGCCGTGCCCGCGACGCTGTACGCCGGCAGCGCG
GTCGGGTTCTTCGCGGTCCCGTACACGATCGTCGTCTACCCGCTGATCTTCGTGTTCCTGCCCCGGCTGTGGTCGGTGAG
CCACCGGCACGGGTACGTCACCCCGGCCGACTTCGTCCAGGGCCGCTACGACAGCCGGCCGCTGGCGCTGGCCGTCGCGC
TGACCGGGATCCTCGCGACGATGCCGTACATCGCGCTGCAGCTCGTCGGCATGCAGGTGGTGCTCGAGGTGATGGGCCTC
GGCACCGACAGCGACAACTGGCTGGTCAAGGACTTCCCGCTGCTGCTCGCCTTCGTGGTCCTGGCCGCCTACACCTACTC
CAGCGGGCTGCGCGCGCCCGCGCTGATCGCGTTCGTCAAGGACACCCTGATCTACCTGGTGATCATCGTGGCGGTCGTCT
ACCTGCCCTCGCAGCTCGGCGGCTGGGAGCACATCTTCTCGACCGTCAACGACAGCTTCAGCTCGTTCAACGCCGACAAC
GCCGACGCCATCGCGGCCGGCGACGCCGCGCCCAAGGGGACGATGCCGCCCGGTCCGGCGCAGTGGGCCTACGCCTCGCT
GGCCCTCGGCTCGGCGCTGGCGCTGTTCATGTACCCGCACTCGGTGACCGGCGTGCTCTCGACCCGCAGCCGGTCGGTGA
TCCGGCGCAACGCGGCCCTGCTGCCGGCGTACTCGTTCCTGCTGGGGCTGCTGGCCCTGCTCGGCTTCGTGGCCATCGCC
GCCGGGGTGAAGGTCGAGAACCCGCAGCAGTCGGTGCCGCAGCTGTTCGAGAACGAGTTCAGCCCCTGGTTCGCCGGGGT
CGCCTTCGCCGCGATCGTGATCGGCGCGCTGGTGCCGGCCGCGATCATGTCGATCGCCGCCGCCAACCTGTGGACCCGCA
ACATCTACAAGGCGTTCATCAACCGTGACGCCACGCACGCCCAGGAGGCCAAGCAGAGCAAGGTCGCCTCGCTGCTGGTG
AAGTTCGGCGCGCTGGTGTTCGTGCTCGCGCTCTCCAACTCGTTCGCGATCAACCTCCAGCTCCTCGGCGGCGTGTGGAT
CCTGCAGACCCTGCCGGCCATCGTGATCGGGCTGTACACCCGCTGGATGCACCGGTGGGCGCTGTTCGCGGGCTGGGCGG
TCGGCATGGCGTGGGGCACCTGGCTCGCGTACGGCGTCTCCTCGCCTGTCCAGGAACACTTCGGCGGGCCGCTCGTGAAC
TTCCCGGGCACCGAGACGAAGTTCTACATTGCGCTGATCGCGTTCCTCGCCAATCTGCTGGTCGCGATCGTGCTCACGGT
GGTCTTCCGTGCGCTCGATGTGGCCGAGGGCGTGGACCAGACCCGTGCGCAGGACTACCACGCCGACGTCGGCGACCCCG
GCGTGGAGTCGGAGCTCGAGCCGCACGAGAGCGTCCGCGCCTGA

Upstream 100 bases:

>100_bases
CGTACCTCGTCGCCACCGGCGCCGACCGCGCCCATCGCCTGGCGCACGGCCTCCCGCCGGAGCCGGACGGCACCGCCGCG
AGCCGGGACGGTGAGCCGCG

Downstream 100 bases:

>100_bases
GGGCGGGTCGTGTGCCTGAGCACGCGCCATGGCGCGTTCTCGGGCACACGACCCTGCACGGGTCGGTAACGTGCCGCGCG
TGACGCCGTCCTTCGAGCTC

Product: Na+/solute symporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 547; Mature: 547

Protein sequence:

>547_residues
MIADVNGVVLGVFVFLFLLVTVLGFAAARWRRAQSLDSLDEWGLGGRGFGTFIAWFLIGGDIYTAYTFIAVPATLYAGSA
VGFFAVPYTIVVYPLIFVFLPRLWSVSHRHGYVTPADFVQGRYDSRPLALAVALTGILATMPYIALQLVGMQVVLEVMGL
GTDSDNWLVKDFPLLLAFVVLAAYTYSSGLRAPALIAFVKDTLIYLVIIVAVVYLPSQLGGWEHIFSTVNDSFSSFNADN
ADAIAAGDAAPKGTMPPGPAQWAYASLALGSALALFMYPHSVTGVLSTRSRSVIRRNAALLPAYSFLLGLLALLGFVAIA
AGVKVENPQQSVPQLFENEFSPWFAGVAFAAIVIGALVPAAIMSIAAANLWTRNIYKAFINRDATHAQEAKQSKVASLLV
KFGALVFVLALSNSFAINLQLLGGVWILQTLPAIVIGLYTRWMHRWALFAGWAVGMAWGTWLAYGVSSPVQEHFGGPLVN
FPGTETKFYIALIAFLANLLVAIVLTVVFRALDVAEGVDQTRAQDYHADVGDPGVESELEPHESVRA

Sequences:

>Translated_547_residues
MIADVNGVVLGVFVFLFLLVTVLGFAAARWRRAQSLDSLDEWGLGGRGFGTFIAWFLIGGDIYTAYTFIAVPATLYAGSA
VGFFAVPYTIVVYPLIFVFLPRLWSVSHRHGYVTPADFVQGRYDSRPLALAVALTGILATMPYIALQLVGMQVVLEVMGL
GTDSDNWLVKDFPLLLAFVVLAAYTYSSGLRAPALIAFVKDTLIYLVIIVAVVYLPSQLGGWEHIFSTVNDSFSSFNADN
ADAIAAGDAAPKGTMPPGPAQWAYASLALGSALALFMYPHSVTGVLSTRSRSVIRRNAALLPAYSFLLGLLALLGFVAIA
AGVKVENPQQSVPQLFENEFSPWFAGVAFAAIVIGALVPAAIMSIAAANLWTRNIYKAFINRDATHAQEAKQSKVASLLV
KFGALVFVLALSNSFAINLQLLGGVWILQTLPAIVIGLYTRWMHRWALFAGWAVGMAWGTWLAYGVSSPVQEHFGGPLVN
FPGTETKFYIALIAFLANLLVAIVLTVVFRALDVAEGVDQTRAQDYHADVGDPGVESELEPHESVRA
>Mature_547_residues
MIADVNGVVLGVFVFLFLLVTVLGFAAARWRRAQSLDSLDEWGLGGRGFGTFIAWFLIGGDIYTAYTFIAVPATLYAGSA
VGFFAVPYTIVVYPLIFVFLPRLWSVSHRHGYVTPADFVQGRYDSRPLALAVALTGILATMPYIALQLVGMQVVLEVMGL
GTDSDNWLVKDFPLLLAFVVLAAYTYSSGLRAPALIAFVKDTLIYLVIIVAVVYLPSQLGGWEHIFSTVNDSFSSFNADN
ADAIAAGDAAPKGTMPPGPAQWAYASLALGSALALFMYPHSVTGVLSTRSRSVIRRNAALLPAYSFLLGLLALLGFVAIA
AGVKVENPQQSVPQLFENEFSPWFAGVAFAAIVIGALVPAAIMSIAAANLWTRNIYKAFINRDATHAQEAKQSKVASLLV
KFGALVFVLALSNSFAINLQLLGGVWILQTLPAIVIGLYTRWMHRWALFAGWAVGMAWGTWLAYGVSSPVQEHFGGPLVN
FPGTETKFYIALIAFLANLLVAIVLTVVFRALDVAEGVDQTRAQDYHADVGDPGVESELEPHESVRA

Specific function: Catalyzes The Sodium-Dependent Uptake Of Extracellular L-Proline. This Protein Is Also Capable Of Using Lithium As The Transport Cation. [C]

COG id: COG0591

COG function: function code ER; Na+/proline symporter

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001734 [H]

Pfam domain/function: PF00474 SSF [H]

EC number: NA

Molecular weight: Translated: 58939; Mature: 58939

Theoretical pI: Translated: 6.43; Mature: 6.43

Prosite motif: PS50283 NA_SOLUT_SYMP_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CHHHCCC
>Mature Secondary Structure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CHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9734814; 9384377 [H]