| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
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The map label for this gene is 119718797
Identifier: 119718797
GI number: 119718797
Start: 4848664
End: 4849953
Strand: Reverse
Name: 119718797
Synonym: Noca_4580
Alternate gene names: NA
Gene position: 4849953-4848664 (Counterclockwise)
Preceding gene: 119718798
Following gene: 119718792
Centisome position: 97.27
GC content: 75.89
Gene sequence:
>1290_bases ATGGCTGAGCGCAGGACCGAGGTGCGGGTCGCCGACCTGCTCGCGCTGCGCTCGTACGACGGGCCCGCCGACGAGCGGTC CGCGGTGGTCCGGGTGCTGGTGGAGTCGGCGCCCGGGGCGTTGGCGCTGGTGCCGCGGCCGGAGTGGCCGCCGCTGACGT CGCTGCGCTCGCGGCGGGCGGAGGGCGGCTGGCTGGTCGTCGCCCGGTTCGCGCGCCCGGTGGCCGTCGCCGAGGTGGTG TCCGAGCTGGGTCGCCAGGCGGTGTGGCCCGTGGTCGTGGCCGTCCGGGAGGACCCGGCGCGGCTCGACGAGCGGCTGTT CAACCCGATCGGCTTCCGGTCGGCCTGGGAGCGCGGGGTGGTGGCGTTGGGGTCGGCCCCGTTGACGCCTTCGCTGGTGG CCGAGCTGCGCGACGCCCAGGGCGTGGCCGTCGGCCCGGACGCCGACCCGCGGACGGTCGCGGGGCTGGCGATGGCCGGC GTCCCGCTCACCGGCGCCGGCTTCGACGAGGTGGACCTCGACGACCCGCTGGCCCGCGAGGAGCACAGCCTGGTGCTGCG CCGGGCCGCCCTCGACGCGCACGGCTCGATCGACTGGCAGCGCCCGGTCTCGGTCCTGCTCGCCACCCGGCGGCCCGAGC AGCTGGACTTCGCGCTGGCCCAGGTGGCCCGGCAGCGCGGGGTCGCCGCGTTGCAGCTGGTGCTCGCGCCGCACGGCTTC ACGGTCGACGAGGCCTGGGTCCGCGCCGCGGTCGGTCCCGCGGTCGACGTACGCCTCGCGCCCGCGAGCGCCGACACGAT CTTCGGCGACGTCCTGCACGCCGCGGCCGGGGTCGCCGACGGCGACGTGCTGCTGAAGATGGACGACGACGACTGGTACG CGCCCGACGTGGTCACCGACCTGCTCCGCGCCCGCGCCTACAGCGGCGCCCAGCTGGTCGGCATGCCCGCGGAGTTCCAC TACGTCGCACCGCGCGACCTCACCGTGAAGCGCGGTCATCCCACCGAGCTGTACGCGCGGTTCGTCGCGGGCGGCACGAT GCTGGTCGACCGGCCGGTGCTGCGCGAGGTCGGCGGGTTCCGCAGCGTGCGCAGGTACGTCGACGCCCAGCTGCTCACCG CCGTCACCGCCGCCGGCGGCGCGATCTACCGCACCCATGGCCTGGGGTACGTGCTGCGCCGCAACGAGTCCGGGCACACC TGGGAGGTCGACCTGGACTACCTCCTCGACCCCAGCCGCGTCGAGCGTTCCTGGACCGGGCTCACCCCGTCGCGACTGAT GGAGCTGTAG
Upstream 100 bases:
>100_bases ACGTGGTCGACCACATCACCCGCACCTGGCTGCCGCGCGTGCCGCGGCCGCTGGTGCAGCGCCGCGGCCGGCTGGACGTC TGAGTTGGGTCCGCAGGCCG
Downstream 100 bases:
>100_bases GGGGCGGGCGGTTTCCCCGGTTCACCGGGGAAGTTGGAACTTCTGCCCCGAAGTTTCGGCCCAACAGTTCCGGTTTCCCC GGTTCACCGGGGAAACCGAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 429; Mature: 428
Protein sequence:
>429_residues MAERRTEVRVADLLALRSYDGPADERSAVVRVLVESAPGALALVPRPEWPPLTSLRSRRAEGGWLVVARFARPVAVAEVV SELGRQAVWPVVVAVREDPARLDERLFNPIGFRSAWERGVVALGSAPLTPSLVAELRDAQGVAVGPDADPRTVAGLAMAG VPLTGAGFDEVDLDDPLAREEHSLVLRRAALDAHGSIDWQRPVSVLLATRRPEQLDFALAQVARQRGVAALQLVLAPHGF TVDEAWVRAAVGPAVDVRLAPASADTIFGDVLHAAAGVADGDVLLKMDDDDWYAPDVVTDLLRARAYSGAQLVGMPAEFH YVAPRDLTVKRGHPTELYARFVAGGTMLVDRPVLREVGGFRSVRRYVDAQLLTAVTAAGGAIYRTHGLGYVLRRNESGHT WEVDLDYLLDPSRVERSWTGLTPSRLMEL
Sequences:
>Translated_429_residues MAERRTEVRVADLLALRSYDGPADERSAVVRVLVESAPGALALVPRPEWPPLTSLRSRRAEGGWLVVARFARPVAVAEVV SELGRQAVWPVVVAVREDPARLDERLFNPIGFRSAWERGVVALGSAPLTPSLVAELRDAQGVAVGPDADPRTVAGLAMAG VPLTGAGFDEVDLDDPLAREEHSLVLRRAALDAHGSIDWQRPVSVLLATRRPEQLDFALAQVARQRGVAALQLVLAPHGF TVDEAWVRAAVGPAVDVRLAPASADTIFGDVLHAAAGVADGDVLLKMDDDDWYAPDVVTDLLRARAYSGAQLVGMPAEFH YVAPRDLTVKRGHPTELYARFVAGGTMLVDRPVLREVGGFRSVRRYVDAQLLTAVTAAGGAIYRTHGLGYVLRRNESGHT WEVDLDYLLDPSRVERSWTGLTPSRLMEL >Mature_428_residues AERRTEVRVADLLALRSYDGPADERSAVVRVLVESAPGALALVPRPEWPPLTSLRSRRAEGGWLVVARFARPVAVAEVVS ELGRQAVWPVVVAVREDPARLDERLFNPIGFRSAWERGVVALGSAPLTPSLVAELRDAQGVAVGPDADPRTVAGLAMAGV PLTGAGFDEVDLDDPLAREEHSLVLRRAALDAHGSIDWQRPVSVLLATRRPEQLDFALAQVARQRGVAALQLVLAPHGFT VDEAWVRAAVGPAVDVRLAPASADTIFGDVLHAAAGVADGDVLLKMDDDDWYAPDVVTDLLRARAYSGAQLVGMPAEFHY VAPRDLTVKRGHPTELYARFVAGGTMLVDRPVLREVGGFRSVRRYVDAQLLTAVTAAGGAIYRTHGLGYVLRRNESGHTW EVDLDYLLDPSRVERSWTGLTPSRLMEL
Specific function: Unknown
COG id: COG0463
COG function: function code M; Glycosyltransferases involved in cell wall biogenesis
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 46454; Mature: 46323
Theoretical pI: Translated: 5.50; Mature: 5.50
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAERRTEVRVADLLALRSYDGPADERSAVVRVLVESAPGALALVPRPEWPPLTSLRSRRA CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHCCC EGGWLVVARFARPVAVAEVVSELGRQAVWPVVVAVREDPARLDERLFNPIGFRSAWERGV CCCEEEEEHHHCHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHCCCCCCHHHHHCCE VALGSAPLTPSLVAELRDAQGVAVGPDADPRTVAGLAMAGVPLTGAGFDEVDLDDPLARE EEECCCCCCHHHHHHHHHCCCEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHH EHSLVLRRAALDAHGSIDWQRPVSVLLATRRPEQLDFALAQVARQRGVAALQLVLAPHGF HHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHEEEEEECCCCC TVDEAWVRAAVGPAVDVRLAPASADTIFGDVLHAAAGVADGDVLLKMDDDDWYAPDVVTD CHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHH LLRARAYSGAQLVGMPAEFHYVAPRDLTVKRGHPTELYARFVAGGTMLVDRPVLREVGGF HHHHHCCCCCEEEECCCCEEEECCCCEEEECCCCHHHHHHHHCCCEEEECCHHHHHHCCH RSVRRYVDAQLLTAVTAAGGAIYRTHGLGYVLRRNESGHTWEVDLDYLLDPSRVERSWTG HHHHHHHHHHHHHHHHHCCCEEEEECCCEEEEEECCCCCEEEEEHHHCCCHHHHHHHCCC LTPSRLMEL CCHHHHHCC >Mature Secondary Structure AERRTEVRVADLLALRSYDGPADERSAVVRVLVESAPGALALVPRPEWPPLTSLRSRRA CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHCCC EGGWLVVARFARPVAVAEVVSELGRQAVWPVVVAVREDPARLDERLFNPIGFRSAWERGV CCCEEEEEHHHCHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHCCCCCCHHHHHCCE VALGSAPLTPSLVAELRDAQGVAVGPDADPRTVAGLAMAGVPLTGAGFDEVDLDDPLARE EEECCCCCCHHHHHHHHHCCCEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHH EHSLVLRRAALDAHGSIDWQRPVSVLLATRRPEQLDFALAQVARQRGVAALQLVLAPHGF HHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHEEEEEECCCCC TVDEAWVRAAVGPAVDVRLAPASADTIFGDVLHAAAGVADGDVLLKMDDDDWYAPDVVTD CHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHH LLRARAYSGAQLVGMPAEFHYVAPRDLTVKRGHPTELYARFVAGGTMLVDRPVLREVGGF HHHHHCCCCCEEEECCCCEEEECCCCEEEECCCCHHHHHHHHCCCEEEECCHHHHHHCCH RSVRRYVDAQLLTAVTAAGGAIYRTHGLGYVLRRNESGHTWEVDLDYLLDPSRVERSWTG HHHHHHHHHHHHHHHHHCCCEEEEECCCEEEEEECCCCCEEEEEHHHCCCHHHHHHHCCC LTPSRLMEL CCHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA