Click here to switch to the map view.

The map label for this gene is alkR [H]

Identifier: 119718602

GI number: 119718602

Start: 4635033

End: 4636031

Strand: Reverse

Name: alkR [H]

Synonym: Noca_4383

Alternate gene names: 119718602

Gene position: 4636031-4635033 (Counterclockwise)

Preceding gene: 119718604

Following gene: 119718601

Centisome position: 92.98

GC content: 74.17

Gene sequence:

>999_bases
ATGACGAACCCGCTCGCCGACGCGTTGGCCAAGCTCCGTCTCGAGGGCGCGATCTTCCTGCGCGGCTCCTACAGCGAGGC
GTGGGCCTACGAGTCCGTCCCGGGGGCCGACCTTGCCGCGCTGCTCGTGCCCGGGGCGGAGCGGGTCGTCCTCATGCACG
TGATCGGCCGGGGGCGCTGCTGGATCCAGGTGGGCGACGGGGACCGGCACTGGGCCGACGCCGGTGACGTGGTCGTGCTG
CCCTACGGCGACACCCATCGGATGGGCGGGGTCGAGTCGGTCGAGCCGGTCCAGGTCGGGACCCTCGTCCAGCCGCCACC
GTGGACCCGGATGCCCGCCATCGAGCACGGCGGTGGCGGCGACCCGACCCAGGTGGTGTGCGGCTATCTCGCGAGCGAGG
ACCCGCTGTTCGACCCGCGGCTCTCGGCGCTGCCGCCGGTGTTCGTCGTCAGTCCGGTCGGCGAGGCCCAGGAGTTCGTG
CGGGCCAGCATCGCCTACGCCCTGCAGCAGACCGCCCAGGTCGCGGACGGCCGGTTCGAGGTGCCGCCCCGGCTTCCCGA
GCTGCTGCTGGTCGAGGTGCTCCGGCTGCACCTCGCGAACGCGCCCGCGGCGCACCACGGCTGGCTCGGTGCGCTCCACC
ACCCGGTGCTGGCGCCGGCCATGGCCGCGATGCACGCCGACCCGGCAGCGCACTGGAGCGTGGCCGAGCTGGCGCGGGTC
GCCGCGGTCTCGGAGTCCCTCCTCGACGAGCGGTTCCGCACGGTCCTCGGGATGCCCCCGATCCGCTACCTGGCCGGCTG
GCGGATGCACCTGGCCCGGGATCTGCTCGAGTCCAGCGAGCTCGGCGTGGCGGTGATCGCCCACCGGGTCGGCTACGAGT
CGGAGGAGGCGTTCAGCCGGGCGTTCAAGCGGGCCCACGGCCGCTCTCCGCGGCAGTGGCGGCAGACCTCGGGCCGGGTG
CCTCAGACGCCTCGCGAGCCCGGGTCGGACCACAGATAA

Upstream 100 bases:

>100_bases
TCTCGGCTGACACCGCTGCCGAGGACCATGACCGAACGCCCGGAGTACATGACCCGTCCGGGATCTGTCGGAGGAGGTCT
CTCGGACTCATGCTGAGCAG

Downstream 100 bases:

>100_bases
GGCACCTTCCCGATGTGCGTGCCTACCTCAGCGAACCACTCTCGGTCTCACCACCGAGGAGCTGAGGAGCCCACCATGTA
CGACAACACCGCACACCGCG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 332; Mature: 331

Protein sequence:

>332_residues
MTNPLADALAKLRLEGAIFLRGSYSEAWAYESVPGADLAALLVPGAERVVLMHVIGRGRCWIQVGDGDRHWADAGDVVVL
PYGDTHRMGGVESVEPVQVGTLVQPPPWTRMPAIEHGGGGDPTQVVCGYLASEDPLFDPRLSALPPVFVVSPVGEAQEFV
RASIAYALQQTAQVADGRFEVPPRLPELLLVEVLRLHLANAPAAHHGWLGALHHPVLAPAMAAMHADPAAHWSVAELARV
AAVSESLLDERFRTVLGMPPIRYLAGWRMHLARDLLESSELGVAVIAHRVGYESEEAFSRAFKRAHGRSPRQWRQTSGRV
PQTPREPGSDHR

Sequences:

>Translated_332_residues
MTNPLADALAKLRLEGAIFLRGSYSEAWAYESVPGADLAALLVPGAERVVLMHVIGRGRCWIQVGDGDRHWADAGDVVVL
PYGDTHRMGGVESVEPVQVGTLVQPPPWTRMPAIEHGGGGDPTQVVCGYLASEDPLFDPRLSALPPVFVVSPVGEAQEFV
RASIAYALQQTAQVADGRFEVPPRLPELLLVEVLRLHLANAPAAHHGWLGALHHPVLAPAMAAMHADPAAHWSVAELARV
AAVSESLLDERFRTVLGMPPIRYLAGWRMHLARDLLESSELGVAVIAHRVGYESEEAFSRAFKRAHGRSPRQWRQTSGRV
PQTPREPGSDHR
>Mature_331_residues
TNPLADALAKLRLEGAIFLRGSYSEAWAYESVPGADLAALLVPGAERVVLMHVIGRGRCWIQVGDGDRHWADAGDVVVLP
YGDTHRMGGVESVEPVQVGTLVQPPPWTRMPAIEHGGGGDPTQVVCGYLASEDPLFDPRLSALPPVFVVSPVGEAQEFVR
ASIAYALQQTAQVADGRFEVPPRLPELLLVEVLRLHLANAPAAHHGWLGALHHPVLAPAMAAMHADPAAHWSVAELARVA
AVSESLLDERFRTVLGMPPIRYLAGWRMHLARDLLESSELGVAVIAHRVGYESEEAFSRAFKRAHGRSPRQWRQTSGRVP
QTPREPGSDHR

Specific function: This protein activates the expression of the alkane 1- monooxygenase AlkM [H]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786496, Length=273, Percent_Identity=24.9084249084249, Blast_Score=86, Evalue=4e-18,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 36077; Mature: 35945

Theoretical pI: Translated: 6.57; Mature: 6.57

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNPLADALAKLRLEGAIFLRGSYSEAWAYESVPGADLAALLVPGAERVVLMHVIGRGRC
CCCHHHHHHHHHHHCCEEEEECCCHHHHCCCCCCCCCCHHHCCCCCCCEEEEEECCCCEE
WIQVGDGDRHWADAGDVVVLPYGDTHRMGGVESVEPVQVGTLVQPPPWTRMPAIEHGGGG
EEEECCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCC
DPTQVVCGYLASEDPLFDPRLSALPPVFVVSPVGEAQEFVRASIAYALQQTAQVADGRFE
CHHHHHHHHHCCCCCCCCCCHHHCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
VPPRLPELLLVEVLRLHLANAPAAHHGWLGALHHPVLAPAMAAMHADPAAHWSVAELARV
CCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
AAVSESLLDERFRTVLGMPPIRYLAGWRMHLARDLLESSELGVAVIAHRVGYESEEAFSR
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHH
AFKRAHGRSPRQWRQTSGRVPQTPREPGSDHR
HHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TNPLADALAKLRLEGAIFLRGSYSEAWAYESVPGADLAALLVPGAERVVLMHVIGRGRC
CCHHHHHHHHHHHCCEEEEECCCHHHHCCCCCCCCCCHHHCCCCCCCEEEEEECCCCEE
WIQVGDGDRHWADAGDVVVLPYGDTHRMGGVESVEPVQVGTLVQPPPWTRMPAIEHGGGG
EEEECCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCC
DPTQVVCGYLASEDPLFDPRLSALPPVFVVSPVGEAQEFVRASIAYALQQTAQVADGRFE
CHHHHHHHHHCCCCCCCCCCHHHCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
VPPRLPELLLVEVLRLHLANAPAAHHGWLGALHHPVLAPAMAAMHADPAAHWSVAELARV
CCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
AAVSESLLDERFRTVLGMPPIRYLAGWRMHLARDLLESSELGVAVIAHRVGYESEEAFSR
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHH
AFKRAHGRSPRQWRQTSGRVPQTPREPGSDHR
HHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9546151 [H]