| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
Click here to switch to the map view.
The map label for this gene is 119718575
Identifier: 119718575
GI number: 119718575
Start: 4605026
End: 4606030
Strand: Reverse
Name: 119718575
Synonym: Noca_4356
Alternate gene names: NA
Gene position: 4606030-4605026 (Counterclockwise)
Preceding gene: 119718576
Following gene: 119718573
Centisome position: 92.38
GC content: 75.12
Gene sequence:
>1005_bases GTGAGCCGACCGACCCCGACCCGTCCGCGCCAGGTGACCCTGGCCGCCTGGCTGATCATGGTCGGCTCGGCGATCGTCGT CGCGATGGTCTTCGAACGGATCGGCGGCCTGCACACGCTGGAGACCCGGGAGTCGGTCGAGCGCTTCCTCGCCGAGCCGC CCGGCGCCGATCTCGGGATCGGCGTCGACGGCGCGATCACGACGCTCCGCGTGGTGTCGATGGTGGCCGCGGGCTGCGCG ACCGCGGCCGCGATCCTCGGCTACCAGGTCCTGCGGCGCAGCCGCAGCGCCCGGCTGGCGCTCACGGTGCTCGCGGTCCC GCTGTTCCTCGCCGGGATGGTGACCGGCGGGTTCGTGTCCTCGGTGGTCGCCGCGTCCGCGGTGATGCTGTGGCTGCAGC CGTCCCGCTCGTGGTTCGCAGGCAAGGCACCCGCGGTGCCGGCGCCACCGGCAGCCCGACCGGTCCCGCCGGTCGGGCCA CCCGCGGACGAGTCCCAGCGACGCTGGCCCCAGCCGCCGACGGCCGGGCAGGTGACCGGGCCGGTGACCGGGCCGGTGCC GGGAGTGGCCTCGGAGCGGCCGCGGCCCGTGGTCGCCGCGTGCGCGCTCACCTGGATCTCCAGCGGGCTGGTCGCCCTCG GGCTGGTGCTGACCGCGCTCGTGCTCGCCCTGGACCCCGACCCACTCCTCGACGAGGTGCACCGGCAGCGACCCGACCTG GCCGAGCAGGGCGTCTCCGACGGCATGCTGGTCGGTGTCTCGCTCGCGATCAGCGCCGTGGTCGTGCTGTGGTGCGTGGC CGCGGTCGTGCTCGCGGCACTCGTCTACCGTCGCATCGACTGGGCCCGGGTCGTGCTGCTGGTGTCCGCCGGGATCAGCG CCGCGCTCTGCCTGGCCGGGCTGGTCGCCGGCGGCTTCTTGTTGATCGTCCCCCTGGCCGCCGCGGTCGGCACCTTCCTC CTGCTGGTCCGCCCCGAGACCCGCCTCTGGTTCCTCGCCCGATAG
Upstream 100 bases:
>100_bases CGGCGGAGGGCGACGGTCTGGCGCTCGAGACGGCGCCCGCGTGACCGGCGTGACCCCGTGTGAGTCGGGGAGACCGGTCC GTGCGTGATCCAATGAGACC
Downstream 100 bases:
>100_bases TCCCTGACGTTTGCGTGGTCCCGCCCGCGGATCGACCCCGCAATCGTCAGGGAGTATCGCTCAGGAGGCCGTGAGGTCGG CGGCCGCGAGGCGGCGCAGA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 334; Mature: 333
Protein sequence:
>334_residues MSRPTPTRPRQVTLAAWLIMVGSAIVVAMVFERIGGLHTLETRESVERFLAEPPGADLGIGVDGAITTLRVVSMVAAGCA TAAAILGYQVLRRSRSARLALTVLAVPLFLAGMVTGGFVSSVVAASAVMLWLQPSRSWFAGKAPAVPAPPAARPVPPVGP PADESQRRWPQPPTAGQVTGPVTGPVPGVASERPRPVVAACALTWISSGLVALGLVLTALVLALDPDPLLDEVHRQRPDL AEQGVSDGMLVGVSLAISAVVVLWCVAAVVLAALVYRRIDWARVVLLVSAGISAALCLAGLVAGGFLLIVPLAAAVGTFL LLVRPETRLWFLAR
Sequences:
>Translated_334_residues MSRPTPTRPRQVTLAAWLIMVGSAIVVAMVFERIGGLHTLETRESVERFLAEPPGADLGIGVDGAITTLRVVSMVAAGCA TAAAILGYQVLRRSRSARLALTVLAVPLFLAGMVTGGFVSSVVAASAVMLWLQPSRSWFAGKAPAVPAPPAARPVPPVGP PADESQRRWPQPPTAGQVTGPVTGPVPGVASERPRPVVAACALTWISSGLVALGLVLTALVLALDPDPLLDEVHRQRPDL AEQGVSDGMLVGVSLAISAVVVLWCVAAVVLAALVYRRIDWARVVLLVSAGISAALCLAGLVAGGFLLIVPLAAAVGTFL LLVRPETRLWFLAR >Mature_333_residues SRPTPTRPRQVTLAAWLIMVGSAIVVAMVFERIGGLHTLETRESVERFLAEPPGADLGIGVDGAITTLRVVSMVAAGCAT AAAILGYQVLRRSRSARLALTVLAVPLFLAGMVTGGFVSSVVAASAVMLWLQPSRSWFAGKAPAVPAPPAARPVPPVGPP ADESQRRWPQPPTAGQVTGPVTGPVPGVASERPRPVVAACALTWISSGLVALGLVLTALVLALDPDPLLDEVHRQRPDLA EQGVSDGMLVGVSLAISAVVVLWCVAAVVLAALVYRRIDWARVVLLVSAGISAALCLAGLVAGGFLLIVPLAAAVGTFLL LVRPETRLWFLAR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34667; Mature: 34536
Theoretical pI: Translated: 10.52; Mature: 10.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRPTPTRPRQVTLAAWLIMVGSAIVVAMVFERIGGLHTLETRESVERFLAEPPGADLGI CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCC GVDGAITTLRVVSMVAAGCATAAAILGYQVLRRSRSARLALTVLAVPLFLAGMVTGGFVS CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SVVAASAVMLWLQPSRSWFAGKAPAVPAPPAARPVPPVGPPADESQRRWPQPPTAGQVTG HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCC PVTGPVPGVASERPRPVVAACALTWISSGLVALGLVLTALVLALDPDPLLDEVHRQRPDL CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCH AEQGVSDGMLVGVSLAISAVVVLWCVAAVVLAALVYRRIDWARVVLLVSAGISAALCLAG HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH LVAGGFLLIVPLAAAVGTFLLLVRPETRLWFLAR HHHHHHHHHHHHHHHHHHHEEEECCCCCEEEEEC >Mature Secondary Structure SRPTPTRPRQVTLAAWLIMVGSAIVVAMVFERIGGLHTLETRESVERFLAEPPGADLGI CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCC GVDGAITTLRVVSMVAAGCATAAAILGYQVLRRSRSARLALTVLAVPLFLAGMVTGGFVS CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SVVAASAVMLWLQPSRSWFAGKAPAVPAPPAARPVPPVGPPADESQRRWPQPPTAGQVTG HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCC PVTGPVPGVASERPRPVVAACALTWISSGLVALGLVLTALVLALDPDPLLDEVHRQRPDL CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCH AEQGVSDGMLVGVSLAISAVVVLWCVAAVVLAALVYRRIDWARVVLLVSAGISAALCLAG HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH LVAGGFLLIVPLAAAVGTFLLLVRPETRLWFLAR HHHHHHHHHHHHHHHHHHHEEEECCCCCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA