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The map label for this gene is yngJ [H]

Identifier: 119718517

GI number: 119718517

Start: 4540672

End: 4541817

Strand: Reverse

Name: yngJ [H]

Synonym: Noca_4298

Alternate gene names: 119718517

Gene position: 4541817-4540672 (Counterclockwise)

Preceding gene: 119718518

Following gene: 119718516

Centisome position: 91.09

GC content: 71.64

Gene sequence:

>1146_bases
ATGGACTACGGATTCGACGAGGACCAGGAGGCGTTCCGCCAGGAGGTCCGGCGGTTCGCCGCCAAGACCCTGGCGCCGCA
CTACCAGTCCGACGACCGAGCGGCGGTGTTCCGGCGTGAGCTCGCGGTCGACATGGCCGGGATGGGCCTGACCGGGCTGC
GCATCCCGGAGGAGTACGGCGGACAGGAGGCGACCGCGGTGATCGCCGGGATCGCCGCGGAGGAGGTCGGCCGTGCCGAC
TTCAACGCGGCGTACCTGATCATCAACACCGCCCTGATCAGCGACATCGTCGTCCGCAACGCCACCGCCGAGCAGCAGGC
GGCCTGGCTGCCCGGGATCGCCTCGGGCGAGGTCGTCCCCTGCATCTGCATCACCGAGCCCGGCCACGGCACCGATGCCG
CCGGCCTGGAGCTGAAGGCGGTCCCGGACGGTGCCGGGTGGACGCTGCACGGCGAGAAGACCTCCATCACGCTCGGGATG
ACCGCCGACCGGGGCGTCGTGCTGGCGCGCACCGGCGGCCCCGGCGCGCGGGGCGTCAGCGCGTTCTGGGTCGACCTGCA
CGACCCGAGCGTCACCCGGGCCGCGTTCGACGACCTCGGCAGTCGTGCGATCGGCCGCGCGTCGCTGCACTTCGACGGGA
CGCCCGTCGCTCGCGCGCAGCTGATCGGCGCCGAGGGCGACGGCTTCGTGTCGGTCATGCAGGGCTTCGACTACTCCCGG
GCGATCATCGGCCTGGCCTGCCTCGGCGCGGCCCAGCAGTCACTCGACGAGGCGGTGCAGTGGTCGCGCGACCGGGTGGC
CTTCGGCAAGCCGATCGGCACCTTCCAGGGGGTCGCGTTCCCCCTGGCCGAGCTCGCGACGTACGTCCGGGGCGCCCGGC
ACGTCTGCTACGAGGCGCTCTGGAACAAGGACCACGACCTCGAGCACTCCGCGCTCGCCGCGATGGCGAAGTTCTGGGCG
CCGAAGCTGGCCACCGAGGTGATCCACAAGTGCCTGCTCACCTTCGGGCACCTGGGCTACTCCTCCGAGAACCCGGTCGG
TCAGCGGCTGCGCGACGTGATCGGGCTGGAGATCGGCGACGGGACCGAGCAGGTCTCCAAGCTCGTCATCTCCCGAGACC
TGCTCGGCCGTGCGTTCGCACCCTGA

Upstream 100 bases:

>100_bases
GCCCGAGGGCCTCGAGGGCGCCGCCGCCTTCGCGGAGAAGCGCAAGCCCGACTTCAACCAGCACGTCAACTGGCACTGAC
GCGCAGGAGGCGAACCGACC

Downstream 100 bases:

>100_bases
CCCGCTCCCACCTCCGACGGACCCAGCTCCAGCCACCCCCCGCAGACCACTCGAAAGGCAAGGACCCCATGGGCAAGCTC
GACTCCAAGATCGCGGTCGT

Product: acyl-CoA dehydrogenase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 381; Mature: 381

Protein sequence:

>381_residues
MDYGFDEDQEAFRQEVRRFAAKTLAPHYQSDDRAAVFRRELAVDMAGMGLTGLRIPEEYGGQEATAVIAGIAAEEVGRAD
FNAAYLIINTALISDIVVRNATAEQQAAWLPGIASGEVVPCICITEPGHGTDAAGLELKAVPDGAGWTLHGEKTSITLGM
TADRGVVLARTGGPGARGVSAFWVDLHDPSVTRAAFDDLGSRAIGRASLHFDGTPVARAQLIGAEGDGFVSVMQGFDYSR
AIIGLACLGAAQQSLDEAVQWSRDRVAFGKPIGTFQGVAFPLAELATYVRGARHVCYEALWNKDHDLEHSALAAMAKFWA
PKLATEVIHKCLLTFGHLGYSSENPVGQRLRDVIGLEIGDGTEQVSKLVISRDLLGRAFAP

Sequences:

>Translated_381_residues
MDYGFDEDQEAFRQEVRRFAAKTLAPHYQSDDRAAVFRRELAVDMAGMGLTGLRIPEEYGGQEATAVIAGIAAEEVGRAD
FNAAYLIINTALISDIVVRNATAEQQAAWLPGIASGEVVPCICITEPGHGTDAAGLELKAVPDGAGWTLHGEKTSITLGM
TADRGVVLARTGGPGARGVSAFWVDLHDPSVTRAAFDDLGSRAIGRASLHFDGTPVARAQLIGAEGDGFVSVMQGFDYSR
AIIGLACLGAAQQSLDEAVQWSRDRVAFGKPIGTFQGVAFPLAELATYVRGARHVCYEALWNKDHDLEHSALAAMAKFWA
PKLATEVIHKCLLTFGHLGYSSENPVGQRLRDVIGLEIGDGTEQVSKLVISRDLLGRAFAP
>Mature_381_residues
MDYGFDEDQEAFRQEVRRFAAKTLAPHYQSDDRAAVFRRELAVDMAGMGLTGLRIPEEYGGQEATAVIAGIAAEEVGRAD
FNAAYLIINTALISDIVVRNATAEQQAAWLPGIASGEVVPCICITEPGHGTDAAGLELKAVPDGAGWTLHGEKTSITLGM
TADRGVVLARTGGPGARGVSAFWVDLHDPSVTRAAFDDLGSRAIGRASLHFDGTPVARAQLIGAEGDGFVSVMQGFDYSR
AIIGLACLGAAQQSLDEAVQWSRDRVAFGKPIGTFQGVAFPLAELATYVRGARHVCYEALWNKDHDLEHSALAAMAKFWA
PKLATEVIHKCLLTFGHLGYSSENPVGQRLRDVIGLEIGDGTEQVSKLVISRDLLGRAFAP

Specific function: Unknown

COG id: COG1960

COG function: function code I; Acyl-CoA dehydrogenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the acyl-CoA dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI4557233, Length=374, Percent_Identity=32.8877005347594, Blast_Score=192, Evalue=5e-49,
Organism=Homo sapiens, GI226958412, Length=383, Percent_Identity=31.331592689295, Blast_Score=174, Evalue=2e-43,
Organism=Homo sapiens, GI4501857, Length=375, Percent_Identity=28, Blast_Score=164, Evalue=2e-40,
Organism=Homo sapiens, GI187960098, Length=382, Percent_Identity=26.4397905759162, Blast_Score=155, Evalue=9e-38,
Organism=Homo sapiens, GI4557231, Length=382, Percent_Identity=26.4397905759162, Blast_Score=154, Evalue=9e-38,
Organism=Homo sapiens, GI4501859, Length=373, Percent_Identity=27.0777479892761, Blast_Score=154, Evalue=1e-37,
Organism=Homo sapiens, GI226958414, Length=347, Percent_Identity=30.835734870317, Blast_Score=152, Evalue=4e-37,
Organism=Homo sapiens, GI7656849, Length=380, Percent_Identity=28.6842105263158, Blast_Score=144, Evalue=1e-34,
Organism=Homo sapiens, GI21361497, Length=337, Percent_Identity=27.5964391691395, Blast_Score=120, Evalue=2e-27,
Organism=Homo sapiens, GI76496475, Length=382, Percent_Identity=26.4397905759162, Blast_Score=111, Evalue=9e-25,
Organism=Homo sapiens, GI4557235, Length=382, Percent_Identity=26.4397905759162, Blast_Score=111, Evalue=1e-24,
Organism=Homo sapiens, GI4503943, Length=383, Percent_Identity=26.1096605744125, Blast_Score=106, Evalue=4e-23,
Organism=Homo sapiens, GI7669494, Length=379, Percent_Identity=26.6490765171504, Blast_Score=101, Evalue=9e-22,
Organism=Homo sapiens, GI48976061, Length=291, Percent_Identity=24.0549828178694, Blast_Score=67, Evalue=3e-11,
Organism=Homo sapiens, GI211971008, Length=291, Percent_Identity=24.0549828178694, Blast_Score=67, Evalue=4e-11,
Organism=Escherichia coli, GI87081958, Length=379, Percent_Identity=28.4960422163588, Blast_Score=158, Evalue=6e-40,
Organism=Escherichia coli, GI1786223, Length=377, Percent_Identity=27.3209549071618, Blast_Score=154, Evalue=8e-39,
Organism=Caenorhabditis elegans, GI17538396, Length=377, Percent_Identity=31.0344827586207, Blast_Score=174, Evalue=5e-44,
Organism=Caenorhabditis elegans, GI17569725, Length=381, Percent_Identity=29.3963254593176, Blast_Score=173, Evalue=1e-43,
Organism=Caenorhabditis elegans, GI17534899, Length=380, Percent_Identity=29.2105263157895, Blast_Score=172, Evalue=3e-43,
Organism=Caenorhabditis elegans, GI17570075, Length=382, Percent_Identity=30.6282722513089, Blast_Score=165, Evalue=5e-41,
Organism=Caenorhabditis elegans, GI17508101, Length=371, Percent_Identity=28.3018867924528, Blast_Score=160, Evalue=1e-39,
Organism=Caenorhabditis elegans, GI17506239, Length=369, Percent_Identity=28.1842818428184, Blast_Score=153, Evalue=1e-37,
Organism=Caenorhabditis elegans, GI17533517, Length=378, Percent_Identity=28.8359788359788, Blast_Score=143, Evalue=1e-34,
Organism=Caenorhabditis elegans, GI71990804, Length=278, Percent_Identity=29.8561151079137, Blast_Score=126, Evalue=2e-29,
Organism=Caenorhabditis elegans, GI17505929, Length=374, Percent_Identity=25.9358288770053, Blast_Score=121, Evalue=7e-28,
Organism=Caenorhabditis elegans, GI17551932, Length=374, Percent_Identity=25.1336898395722, Blast_Score=119, Evalue=3e-27,
Organism=Caenorhabditis elegans, GI17534353, Length=376, Percent_Identity=25, Blast_Score=108, Evalue=4e-24,
Organism=Caenorhabditis elegans, GI71982178, Length=274, Percent_Identity=27.007299270073, Blast_Score=104, Evalue=7e-23,
Organism=Caenorhabditis elegans, GI71985184, Length=351, Percent_Identity=26.4957264957265, Blast_Score=101, Evalue=7e-22,
Organism=Caenorhabditis elegans, GI32563615, Length=228, Percent_Identity=29.3859649122807, Blast_Score=99, Evalue=4e-21,
Organism=Caenorhabditis elegans, GI71985192, Length=307, Percent_Identity=26.3843648208469, Blast_Score=93, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17531909, Length=239, Percent_Identity=25.9414225941423, Blast_Score=74, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24646207, Length=373, Percent_Identity=30.5630026809651, Blast_Score=169, Evalue=2e-42,
Organism=Drosophila melanogaster, GI24660351, Length=377, Percent_Identity=28.3819628647215, Blast_Score=167, Evalue=8e-42,
Organism=Drosophila melanogaster, GI21356377, Length=378, Percent_Identity=29.8941798941799, Blast_Score=165, Evalue=5e-41,
Organism=Drosophila melanogaster, GI21355753, Length=379, Percent_Identity=29.5514511873351, Blast_Score=159, Evalue=4e-39,
Organism=Drosophila melanogaster, GI24666513, Length=369, Percent_Identity=27.6422764227642, Blast_Score=142, Evalue=3e-34,
Organism=Drosophila melanogaster, GI281363737, Length=339, Percent_Identity=25.9587020648968, Blast_Score=109, Evalue=3e-24,
Organism=Drosophila melanogaster, GI19920834, Length=393, Percent_Identity=26.4631043256997, Blast_Score=105, Evalue=5e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006089
- InterPro:   IPR006092
- InterPro:   IPR006090
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR013786
- InterPro:   IPR009100 [H]

Pfam domain/function: PF00441 Acyl-CoA_dh_1; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]

EC number: NA

Molecular weight: Translated: 40650; Mature: 40650

Theoretical pI: Translated: 5.02; Mature: 5.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDYGFDEDQEAFRQEVRRFAAKTLAPHYQSDDRAAVFRRELAVDMAGMGLTGLRIPEEYG
CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHC
GQEATAVIAGIAAEEVGRADFNAAYLIINTALISDIVVRNATAEQQAAWLPGIASGEVVP
CCHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHCCCCHHHHHHCCCCCCCCCEEE
CICITEPGHGTDAAGLELKAVPDGAGWTLHGEKTSITLGMTADRGVVLARTGGPGARGVS
EEEEECCCCCCCCCCEEEEECCCCCCEEEECCCEEEEEEEECCCCEEEEECCCCCCCCCE
AFWVDLHDPSVTRAAFDDLGSRAIGRASLHFDGTPVARAQLIGAEGDGFVSVMQGFDYSR
EEEEEECCCCHHHHHHHHHCCHHHCCEEEEECCCCCCHHEEECCCCCCHHHHHHCCCHHH
AIIGLACLGAAQQSLDEAVQWSRDRVAFGKPIGTFQGVAFPLAELATYVRGARHVCYEAL
HHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
WNKDHDLEHSALAAMAKFWAPKLATEVIHKCLLTFGHLGYSSENPVGQRLRDVIGLEIGD
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCC
GTEQVSKLVISRDLLGRAFAP
CHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MDYGFDEDQEAFRQEVRRFAAKTLAPHYQSDDRAAVFRRELAVDMAGMGLTGLRIPEEYG
CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHC
GQEATAVIAGIAAEEVGRADFNAAYLIINTALISDIVVRNATAEQQAAWLPGIASGEVVP
CCHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHCCCCHHHHHHCCCCCCCCCEEE
CICITEPGHGTDAAGLELKAVPDGAGWTLHGEKTSITLGMTADRGVVLARTGGPGARGVS
EEEEECCCCCCCCCCEEEEECCCCCCEEEECCCEEEEEEEECCCCEEEEECCCCCCCCCE
AFWVDLHDPSVTRAAFDDLGSRAIGRASLHFDGTPVARAQLIGAEGDGFVSVMQGFDYSR
EEEEEECCCCHHHHHHHHHCCHHHCCEEEEECCCCCCHHEEECCCCCCHHHHHHCCCHHH
AIIGLACLGAAQQSLDEAVQWSRDRVAFGKPIGTFQGVAFPLAELATYVRGARHVCYEAL
HHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
WNKDHDLEHSALAAMAKFWAPKLATEVIHKCLLTFGHLGYSSENPVGQRLRDVIGLEIGD
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCC
GTEQVSKLVISRDLLGRAFAP
CHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9387222; 9384377 [H]