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The map label for this gene is ycfQ [C]

Identifier: 119718464

GI number: 119718464

Start: 4483138

End: 4483803

Strand: Reverse

Name: ycfQ [C]

Synonym: Noca_4245

Alternate gene names: 119718464

Gene position: 4483803-4483138 (Counterclockwise)

Preceding gene: 119718465

Following gene: 119718462

Centisome position: 89.93

GC content: 77.63

Gene sequence:

>666_bases
GTGACGCACCCGAGCCCGCTGCCCGACCGCTCGCCGGTCGCGCGCGGCCGCGCCCGGGCCCGACACACCCGGGATGCCGT
CGTGGAGACCGCGCTGCGGCTGTTCTCCGAGCACGGCTATCTCGCGGTGCGGGTCGAGGACATCGCGCGCGAGGCCGGCA
TCTCGCGGGCGACGTTCTACAAGTACTTCTCCGAGCGCGAGGAGATCCTGGCCGCGCTGCTGACCCGGCTGCTCGACGAC
CAGGCGGCGGCCCAGGTCGACCGGGTCCACGCCGACGGCGCCGCCGGGCCGGACGGTACGACGCCCGACGTCTCCACCCG
GGTGCGGGCCCTGGCCCGGGAGGTCGCCGAGCGGACGCTCGAGCGCGAGGAGCTGGCCCGCTTCGTCTACGCCCTCCCGG
TGCGCCACGAGGCGCTGCTGAACGTCGAGCCGCTGCGCCGGCCGCGGGCCTGCCGGCAGCTCGACGGGCTCCTGGCCGAG
GCGGGCGCGACGGGCGAGCTGCGCGCCGACGTACCGCTCGGCGCGGCGCGCGCACACGTGCACGCCGCGATCGAGACGGC
GCTGCGCGCCTGGGCGACCGGGCAGGCCCCGGACGCGCTGGCCGAGGTCGACCGGCAGCTCGACCTCGCGCTGTACGGCG
TGCTCGGGCTGCCCCACGCCGGCTAG

Upstream 100 bases:

>100_bases
CTGCGCGCGTTCGCGCGCCGCACCGTCGCCGGCCACCCGGGCTAGACGGCGCCGCGGCCGCCGGAGTAGACAGATGTGCA
CACGCGTGTACGCTGGACGC

Downstream 100 bases:

>100_bases
CCCGGGCTCACGGACCTGGCCTCGCTAGCGCCGGCGGATCGCCTTGCGGGTCGGTGCCGCGGCGCCGTGCAGCACCACAT
CCAGGTGCTGGGCCAGCCGC

Product: regulatory protein TetR

Products: NA

Alternate protein names: Regulatory Protein TetR

Number of amino acids: Translated: 221; Mature: 220

Protein sequence:

>221_residues
MTHPSPLPDRSPVARGRARARHTRDAVVETALRLFSEHGYLAVRVEDIAREAGISRATFYKYFSEREEILAALLTRLLDD
QAAAQVDRVHADGAAGPDGTTPDVSTRVRALAREVAERTLEREELARFVYALPVRHEALLNVEPLRRPRACRQLDGLLAE
AGATGELRADVPLGAARAHVHAAIETALRAWATGQAPDALAEVDRQLDLALYGVLGLPHAG

Sequences:

>Translated_221_residues
MTHPSPLPDRSPVARGRARARHTRDAVVETALRLFSEHGYLAVRVEDIAREAGISRATFYKYFSEREEILAALLTRLLDD
QAAAQVDRVHADGAAGPDGTTPDVSTRVRALAREVAERTLEREELARFVYALPVRHEALLNVEPLRRPRACRQLDGLLAE
AGATGELRADVPLGAARAHVHAAIETALRAWATGQAPDALAEVDRQLDLALYGVLGLPHAG
>Mature_220_residues
THPSPLPDRSPVARGRARARHTRDAVVETALRLFSEHGYLAVRVEDIAREAGISRATFYKYFSEREEILAALLTRLLDDQ
AAAQVDRVHADGAAGPDGTTPDVSTRVRALAREVAERTLEREELARFVYALPVRHEALLNVEPLRRPRACRQLDGLLAEA
GATGELRADVPLGAARAHVHAAIETALRAWATGQAPDALAEVDRQLDLALYGVLGLPHAG

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24052; Mature: 23921

Theoretical pI: Translated: 6.73; Mature: 6.73

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTHPSPLPDRSPVARGRARARHTRDAVVETALRLFSEHGYLAVRVEDIAREAGISRATFY
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHCCHHHHHH
KYFSEREEILAALLTRLLDDQAAAQVDRVHADGAAGPDGTTPDVSTRVRALAREVAERTL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
EREELARFVYALPVRHEALLNVEPLRRPRACRQLDGLLAEAGATGELRADVPLGAARAHV
HHHHHHHHHHHHHHHHHHHCCCHHHHCHHHHHHHHHHHHHCCCCCCEECCCCCCHHHHHH
HAAIETALRAWATGQAPDALAEVDRQLDLALYGVLGLPHAG
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
THPSPLPDRSPVARGRARARHTRDAVVETALRLFSEHGYLAVRVEDIAREAGISRATFY
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHCCHHHHHH
KYFSEREEILAALLTRLLDDQAAAQVDRVHADGAAGPDGTTPDVSTRVRALAREVAERTL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
EREELARFVYALPVRHEALLNVEPLRRPRACRQLDGLLAEAGATGELRADVPLGAARAHV
HHHHHHHHHHHHHHHHHHHCCCHHHHCHHHHHHHHHHHHHCCCCCCEECCCCCCHHHHHH
HAAIETALRAWATGQAPDALAEVDRQLDLALYGVLGLPHAG
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA