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The map label for this gene is degT [H]

Identifier: 119718439

GI number: 119718439

Start: 4460939

End: 4462048

Strand: Reverse

Name: degT [H]

Synonym: Noca_4220

Alternate gene names: 119718439

Gene position: 4462048-4460939 (Counterclockwise)

Preceding gene: 119718440

Following gene: 119718438

Centisome position: 89.49

GC content: 61.98

Gene sequence:

>1110_bases
ATGGGATGGCGGGTCAAGTTTATCGACTTTCCGCTGCAATGGGAGCAGCAGCGAGCGCACCTCCTTCCGGTCATCGACGA
CACACTGGCGCGGGGCGACGTCATGCTTCGCCACCAGCTCGTGGACTTCGAGGAGCATCTCGCTGAATTCGTGGGGACTC
GCCATGGCGTCGGCGTGAGCAACTGCACCGACGGACTACGGCTCATAGCCCATTCCCTCGGCATTGGTCCCGGGGATGAG
GTCGTCACGGTCGCGCACACATTTATCGCGACAATCTCGCCCTTCGTAATGCGGGGAGCGTCGCCAGTGTTTGTCGACAT
TGGTGACGACCAGTTGATGGACACGAGTCAACTCGAGGCTGCAGTGACCGAGCGGACGAGGGTCATCGTCCCAGTTCATC
TCAATGGTCGCACCGTCGATATGACCGAGGTGCTCAGGATTGCCGAGGCCTGCGGTGCGACGGTGATTGAAGATGCGGCT
CAGGCGCTCGGAGCCACTATCGATGGCCGCACCGCCGGGTCCATGGGCTTGGCCAGCACCTACTCGTTCTACCCAGCCAA
AATGCTCGGAACACCGGGCGACGGTGGTGCCGTGCTAACCGACGACGACGAGCTCACGGCCGACATACGCCGACTACGTG
ACCACGGGCGCGTATCCAAGACGGAGGTCGACGGCTGGGGCTACAACTGCCGGCTTGACAACTTGCACGCAGCAATTCTC
GACTGGCGGCTGACCCAGATTCCCCGCTGGATCGAGCACCGCCGGACCGTCGCCGACATTTACGACCAGATGCTTGCGGA
CATCGAGGGGCTCGACTTGCCGGTCGGCCCCGACGCGGATCCGCGGCGCAGGGACGTCTATCAGAACTACACGGTCATGA
CCGATCGCCGCGACGACTTGGTCAAGCATCTCAACAGCGACGGCGTCGAGGTGCTCGTGTCGTGGCCGGTCCCGTTCCAC
AAGCAATCGGGAGTCGGGCTTGACCACTGGAATCTGCCCAACACCGAGCGACTTAGCCGCCGGGTCCTGTCGTTGCCGAT
GAACGCTGAACTCGACTTATCGCAGGTCGAATACGTCGCTGAATCGGTTCGACGGTTTTTCGGTCGATGA

Upstream 100 bases:

>100_bases
TCAGCTCGGTCGTCGGCGACCAAGAGTACCTGCGTGGTGTGCACGGGCTGACACGGCAAGCCATCACCGAACGAGCGATC
AAGCGACTGGAGGACCTCTG

Downstream 100 bases:

>100_bases
GAGCGCAGACACACCTACGACGGGCGTCGTACCGGGTCTCGAAGAGAATGGTAGACCTGGCAATCGCCATTAGCGTCGGT
GTGGTCTTGACGCCTCTGGG

Product: DegT/DnrJ/EryC1/StrS aminotransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 369; Mature: 368

Protein sequence:

>369_residues
MGWRVKFIDFPLQWEQQRAHLLPVIDDTLARGDVMLRHQLVDFEEHLAEFVGTRHGVGVSNCTDGLRLIAHSLGIGPGDE
VVTVAHTFIATISPFVMRGASPVFVDIGDDQLMDTSQLEAAVTERTRVIVPVHLNGRTVDMTEVLRIAEACGATVIEDAA
QALGATIDGRTAGSMGLASTYSFYPAKMLGTPGDGGAVLTDDDELTADIRRLRDHGRVSKTEVDGWGYNCRLDNLHAAIL
DWRLTQIPRWIEHRRTVADIYDQMLADIEGLDLPVGPDADPRRRDVYQNYTVMTDRRDDLVKHLNSDGVEVLVSWPVPFH
KQSGVGLDHWNLPNTERLSRRVLSLPMNAELDLSQVEYVAESVRRFFGR

Sequences:

>Translated_369_residues
MGWRVKFIDFPLQWEQQRAHLLPVIDDTLARGDVMLRHQLVDFEEHLAEFVGTRHGVGVSNCTDGLRLIAHSLGIGPGDE
VVTVAHTFIATISPFVMRGASPVFVDIGDDQLMDTSQLEAAVTERTRVIVPVHLNGRTVDMTEVLRIAEACGATVIEDAA
QALGATIDGRTAGSMGLASTYSFYPAKMLGTPGDGGAVLTDDDELTADIRRLRDHGRVSKTEVDGWGYNCRLDNLHAAIL
DWRLTQIPRWIEHRRTVADIYDQMLADIEGLDLPVGPDADPRRRDVYQNYTVMTDRRDDLVKHLNSDGVEVLVSWPVPFH
KQSGVGLDHWNLPNTERLSRRVLSLPMNAELDLSQVEYVAESVRRFFGR
>Mature_368_residues
GWRVKFIDFPLQWEQQRAHLLPVIDDTLARGDVMLRHQLVDFEEHLAEFVGTRHGVGVSNCTDGLRLIAHSLGIGPGDEV
VTVAHTFIATISPFVMRGASPVFVDIGDDQLMDTSQLEAAVTERTRVIVPVHLNGRTVDMTEVLRIAEACGATVIEDAAQ
ALGATIDGRTAGSMGLASTYSFYPAKMLGTPGDGGAVLTDDDELTADIRRLRDHGRVSKTEVDGWGYNCRLDNLHAAILD
WRLTQIPRWIEHRRTVADIYDQMLADIEGLDLPVGPDADPRRRDVYQNYTVMTDRRDDLVKHLNSDGVEVLVSWPVPFHK
QSGVGLDHWNLPNTERLSRRVLSLPMNAELDLSQVEYVAESVRRFFGR

Specific function: This membrane protein may function as a sensor protein and may transfer the signal of environmental stimuli to the regulatory region of target genes to activate or repress transcription of the genes [H]

COG id: COG0399

COG function: function code M; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the degT/dnrJ/eryC1 family [H]

Homologues:

Organism=Escherichia coli, GI145693159, Length=370, Percent_Identity=28.3783783783784, Blast_Score=143, Evalue=1e-35,
Organism=Escherichia coli, GI2367285, Length=340, Percent_Identity=29.4117647058824, Blast_Score=134, Evalue=7e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000653
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01041 DegT_DnrJ_EryC1 [H]

EC number: NA

Molecular weight: Translated: 41141; Mature: 41010

Theoretical pI: Translated: 4.95; Mature: 4.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGWRVKFIDFPLQWEQQRAHLLPVIDDTLARGDVMLRHQLVDFEEHLAEFVGTRHGVGVS
CCCEEEEEECCCCCCCCHHCCCCHHHHHHHHCHHHHHHHHHCHHHHHHHHHCCCCCCCCH
NCTDGLRLIAHSLGIGPGDEVVTVAHTFIATISPFVMRGASPVFVDIGDDQLMDTSQLEA
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHH
AVTERTRVIVPVHLNGRTVDMTEVLRIAEACGATVIEDAAQALGATIDGRTAGSMGLAST
HHHCCCEEEEEEEECCCEECHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCCCCCHH
YSFYPAKMLGTPGDGGAVLTDDDELTADIRRLRDHGRVSKTEVDGWGYNCRLDNLHAAIL
CCCCCHHHCCCCCCCCEEEECCHHHHHHHHHHHHCCCCCCEEECCCCCEEEECCHHHHHH
DWRLTQIPRWIEHRRTVADIYDQMLADIEGLDLPVGPDADPRRRDVYQNYTVMTDRRDDL
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCEEEECCHHHH
VKHLNSDGVEVLVSWPVPFHKQSGVGLDHWNLPNTERLSRRVLSLPMNAELDLSQVEYVA
HHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHH
ESVRRFFGR
HHHHHHHCC
>Mature Secondary Structure 
GWRVKFIDFPLQWEQQRAHLLPVIDDTLARGDVMLRHQLVDFEEHLAEFVGTRHGVGVS
CCEEEEEECCCCCCCCHHCCCCHHHHHHHHCHHHHHHHHHCHHHHHHHHHCCCCCCCCH
NCTDGLRLIAHSLGIGPGDEVVTVAHTFIATISPFVMRGASPVFVDIGDDQLMDTSQLEA
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHH
AVTERTRVIVPVHLNGRTVDMTEVLRIAEACGATVIEDAAQALGATIDGRTAGSMGLAST
HHHCCCEEEEEEEECCCEECHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCCCCCHH
YSFYPAKMLGTPGDGGAVLTDDDELTADIRRLRDHGRVSKTEVDGWGYNCRLDNLHAAIL
CCCCCHHHCCCCCCCCEEEECCHHHHHHHHHHHHCCCCCCEEECCCCCEEEECCHHHHHH
DWRLTQIPRWIEHRRTVADIYDQMLADIEGLDLPVGPDADPRRRDVYQNYTVMTDRRDDL
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCEEEECCHHHH
VKHLNSDGVEVLVSWPVPFHKQSGVGLDHWNLPNTERLSRRVLSLPMNAELDLSQVEYVA
HHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHH
ESVRRFFGR
HHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2104607 [H]