| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
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The map label for this gene is 119718436
Identifier: 119718436
GI number: 119718436
Start: 4458256
End: 4459512
Strand: Reverse
Name: 119718436
Synonym: Noca_4217
Alternate gene names: NA
Gene position: 4459512-4458256 (Counterclockwise)
Preceding gene: 119718437
Following gene: 119718435
Centisome position: 89.44
GC content: 60.38
Gene sequence:
>1257_bases GTGAGTCAACGAAGCAGCGTCTATCCGAACGGCCCCGTTGCCTGGATCTTCAATCATTATGCAGGTTTCCCTGAGGACGT TCCTGCGACCCGGACATATGAGCTGTCCCGTGAACTGCAGCGGCGCGGCTGGAATGTGACTGTCATCGCCTGCAGCTTCA ATCACTACACGTTTGTGGACGATCTCGGAGCGGATGGTTCCAGGGTCCAGGAGTTGCTGCGTGAAGGTGTGCGATGGGTG CGGATTAGAGCTCATCCCTACGAGGGCAACGGAACCGCTCGGTTGCGAAACATGCTCGGGTACTCGAGCCAAGCATTGAA CTGGAGCCGCCGCCAATCCCCACCGGATGTAGTGGTGGGCACAACGGTGCATCCATTCGCCGCCGAGACTGCCAGGCGCG TTGCCCGCGAACGGAACGCACGCTTCGTCTACGAGATCACGGACTTGTGGCCGGAGAGCTTGGTAGATCTGGGCTCGGTC CGCAATGGTTCCGCGACGTATCGGGCAATGTCGTGGATGGAGCGTCGGGCGCTGACGGACAGCGATGGTGTCGTAGGGCT CATGCCGAAGGTCCCGGAGTACGCGCGGAGCCGGTATGGCGTAGAGCTCGACTCGTTCGCCTATATACCCAACGGTATAC GTCTGACCGAGGATGGGGAGGACGTAACTCCTATCCCCATGCGTGGGCGTGTCGCCTATGCTGGAGGTTTCGCTCGTGCA CACGGGCTGGATACCGTCATCGACGCAGCCGGAACACTTCTTTCTTCTCACCCGCACATCACGTTCGACCTGTACGGCGA TGGGCCGATGAGGCGGGACTTGGAGGATCGGGTCCTCCGGAACCGGCTGTCAAACGTCGTGTTCCACGGCCTGGTCCCCA AGGCGAGTTTGTGGGGTCACCTACGAGAGGCGGACGTCTGTCTCTGTACTGGTCAAAGTCTCGCCGTACACCGGTATGGA ATTAGTTTCAACAAGCTCTTCGACTACTTTGCCGTGGGTCGGCCAGTGGTCTTCGCCGTCGACAGCGGCAACGATCCAGT CACCGAGGCCGGTGCCGGACTGTCGGTTGCTGCTGGAGATGCCGCCGCACTGGCGGCCGCGATCGCCGACTTGATAGATT CGCCCGCAGATGTGCTGCAGCACATGGGGCATCGGGGTCGTGCGTTTTTACAGGCGCACCATAGTTTCAGTGTCCTGGGT GAGCGGCTCGACGGATATCTCTGGACACTGCTGAAAGCCAACGACGGACTTGTGTGA
Upstream 100 bases:
>100_bases GCTCACTCCAGTCGAGAGCAGCGGTGACTCGAGCCGATACGCGGTGTGGGTTGCCGTCGCTACTCGAGTCCGCGACGACG GTACGACCTGAGGTGGCATC
Downstream 100 bases:
>100_bases GCCCAACCAAGGAGAAGATCCGTGCCTCAGGACCTGCAGACGCTACTTGAACACCTGTCAAAGATCGCAGCGATGCCAGA TGAAATCTGGTTGTCGTCCT
Product: group 1 glycosyl transferase
Products: NA
Alternate protein names: Glycosyl Transferase; Group 1 Glycosyl Transferase; WblI Protein; Lipopolysaccharide Biosynthesis Protein; Lipopolysaccharides Biosynthesis Glycosyltransferase; Glycosyltransferase Protein; Phosphoserine Aminotransferase; Glycosyltransferase-Like Protein; Glycosyl Transferase Group 1 Family Protein; Glycosyl Transferase Group 1 Family; Glycosyl Transferase Group 1 Protein; Glycosyl Transferase WbpJ; Glycosyltransferase Group 1 Family Protein
Number of amino acids: Translated: 418; Mature: 417
Protein sequence:
>418_residues MSQRSSVYPNGPVAWIFNHYAGFPEDVPATRTYELSRELQRRGWNVTVIACSFNHYTFVDDLGADGSRVQELLREGVRWV RIRAHPYEGNGTARLRNMLGYSSQALNWSRRQSPPDVVVGTTVHPFAAETARRVARERNARFVYEITDLWPESLVDLGSV RNGSATYRAMSWMERRALTDSDGVVGLMPKVPEYARSRYGVELDSFAYIPNGIRLTEDGEDVTPIPMRGRVAYAGGFARA HGLDTVIDAAGTLLSSHPHITFDLYGDGPMRRDLEDRVLRNRLSNVVFHGLVPKASLWGHLREADVCLCTGQSLAVHRYG ISFNKLFDYFAVGRPVVFAVDSGNDPVTEAGAGLSVAAGDAAALAAAIADLIDSPADVLQHMGHRGRAFLQAHHSFSVLG ERLDGYLWTLLKANDGLV
Sequences:
>Translated_418_residues MSQRSSVYPNGPVAWIFNHYAGFPEDVPATRTYELSRELQRRGWNVTVIACSFNHYTFVDDLGADGSRVQELLREGVRWV RIRAHPYEGNGTARLRNMLGYSSQALNWSRRQSPPDVVVGTTVHPFAAETARRVARERNARFVYEITDLWPESLVDLGSV RNGSATYRAMSWMERRALTDSDGVVGLMPKVPEYARSRYGVELDSFAYIPNGIRLTEDGEDVTPIPMRGRVAYAGGFARA HGLDTVIDAAGTLLSSHPHITFDLYGDGPMRRDLEDRVLRNRLSNVVFHGLVPKASLWGHLREADVCLCTGQSLAVHRYG ISFNKLFDYFAVGRPVVFAVDSGNDPVTEAGAGLSVAAGDAAALAAAIADLIDSPADVLQHMGHRGRAFLQAHHSFSVLG ERLDGYLWTLLKANDGLV >Mature_417_residues SQRSSVYPNGPVAWIFNHYAGFPEDVPATRTYELSRELQRRGWNVTVIACSFNHYTFVDDLGADGSRVQELLREGVRWVR IRAHPYEGNGTARLRNMLGYSSQALNWSRRQSPPDVVVGTTVHPFAAETARRVARERNARFVYEITDLWPESLVDLGSVR NGSATYRAMSWMERRALTDSDGVVGLMPKVPEYARSRYGVELDSFAYIPNGIRLTEDGEDVTPIPMRGRVAYAGGFARAH GLDTVIDAAGTLLSSHPHITFDLYGDGPMRRDLEDRVLRNRLSNVVFHGLVPKASLWGHLREADVCLCTGQSLAVHRYGI SFNKLFDYFAVGRPVVFAVDSGNDPVTEAGAGLSVAAGDAAALAAAIADLIDSPADVLQHMGHRGRAFLQAHHSFSVLGE RLDGYLWTLLKANDGLV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 46160; Mature: 46028
Theoretical pI: Translated: 7.05; Mature: 7.05
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSQRSSVYPNGPVAWIFNHYAGFPEDVPATRTYELSRELQRRGWNVTVIACSFNHYTFVD CCCCCCCCCCCCEEEEEHHHCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCEEEEC DLGADGSRVQELLREGVRWVRIRAHPYEGNGTARLRNMLGYSSQALNWSRRQSPPDVVVG CCCCCHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHCCCHHHCCCHHCCCCCCEEEC TTVHPFAAETARRVARERNARFVYEITDLWPESLVDLGSVRNGSATYRAMSWMERRALTD CCCCHHHHHHHHHHHHHCCCEEEEEEHHCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCC SDGVVGLMPKVPEYARSRYGVELDSFAYIPNGIRLTEDGEDVTPIPMRGRVAYAGGFARA CCCEEECCCCCCHHHHHHCCCCCCCEEECCCCCEECCCCCCCCCCCCCCEEEECCCCHHH HGLDTVIDAAGTLLSSHPHITFDLYGDGPMRRDLEDRVLRNRLSNVVFHGLVPKASLWGH CCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHC LREADVCLCTGQSLAVHRYGISFNKLFDYFAVGRPVVFAVDSGNDPVTEAGAGLSVAAGD CCCCCEEEECCCCEEEEEECCCHHHHHHHHHCCCCEEEEEECCCCCCHHCCCCCEEECCH AAALAAAIADLIDSPADVLQHMGHRGRAFLQAHHSFSVLGERLDGYLWTLLKANDGLV HHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCC >Mature Secondary Structure SQRSSVYPNGPVAWIFNHYAGFPEDVPATRTYELSRELQRRGWNVTVIACSFNHYTFVD CCCCCCCCCCCEEEEEHHHCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCEEEEC DLGADGSRVQELLREGVRWVRIRAHPYEGNGTARLRNMLGYSSQALNWSRRQSPPDVVVG CCCCCHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHCCCHHHCCCHHCCCCCCEEEC TTVHPFAAETARRVARERNARFVYEITDLWPESLVDLGSVRNGSATYRAMSWMERRALTD CCCCHHHHHHHHHHHHHCCCEEEEEEHHCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCC SDGVVGLMPKVPEYARSRYGVELDSFAYIPNGIRLTEDGEDVTPIPMRGRVAYAGGFARA CCCEEECCCCCCHHHHHHCCCCCCCEEECCCCCEECCCCCCCCCCCCCCEEEECCCCHHH HGLDTVIDAAGTLLSSHPHITFDLYGDGPMRRDLEDRVLRNRLSNVVFHGLVPKASLWGH CCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHC LREADVCLCTGQSLAVHRYGISFNKLFDYFAVGRPVVFAVDSGNDPVTEAGAGLSVAAGD CCCCCEEEECCCCEEEEEECCCHHHHHHHHHCCCCEEEEEECCCCCCHHCCCCCEEECCH AAALAAAIADLIDSPADVLQHMGHRGRAFLQAHHSFSVLGERLDGYLWTLLKANDGLV HHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA