| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
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The map label for this gene is ifcA [H]
Identifier: 119718294
GI number: 119718294
Start: 4300781
End: 4302235
Strand: Reverse
Name: ifcA [H]
Synonym: Noca_4075
Alternate gene names: 119718294
Gene position: 4302235-4300781 (Counterclockwise)
Preceding gene: 119718295
Following gene: 119718282
Centisome position: 86.29
GC content: 72.51
Gene sequence:
>1455_bases ATGCAGAGCGACACCACCTACGACGTCGTGGTCGTCGGCGCCGGAACGGCGGGGATCCCCTGTGCGGTGCACGCCGCCCA GGGGGGAGCCCGGGTCCTGCTCGTGGAGAAGGACAGCAAGATCGGCGGGACCCTGCACGTGACCGGCGGCCACATGGCCG CGGCGGGCACCCGGCGGCAGGCGGAGCACGGCATCGAGGACAGCCCGCAGGCCCACCTCGAGGACATCCGCCGGATCAGC CAGGGGACGGCGCGCGACGACCTGATCCGGATCGTCGCGGAGCACGCCGCCGACACCGTCGACTGGCTGGCCGAGCGCGG CTTCGCCTTCGCTCCGGAGACGCCGCGCATCGTCTACGGGCACGAGCCCTACACCGTCGCCCGCACCTACTACGGCAAGG ACGAGGGACTCTCCATCCTGGAGGTCCTGCGGCCCGAGCTGGAGCGCACCCAGGAGAGCTACGACCTCACCGTCTGGACC GACGCCGTGGTCGGTGAGCTCCGTACCGGTGACGACGGCGGGGTGATCGGCGTCTCGGTGCTGCGGGCGGGGAGCGAGGT CGAGGTCGACGCCGACGCGGTCGTCCTGGCGACCGGCGGCTACGCCGCCGACGCCGAGCTCTTCGAGGAGCTCGAGCACG CGCCTCTCGTGTCGGCCGCCGCCCGCACGTCCACCGGCGACGGGCTGCATCTCGGGCTCGCCGCGGGTGCTCGCCTCCAG GGCGCGGGAACGCACCTCCCGACCTTCGGCGGCCTGCCCGACCCGCGGAACCCGAACCGCGCCAACTGGTCGGACCGGCA GCGGCTGACCAGCGAGCGTCCGCCCCGGGAGATCTACGTCGACAGGCACGGCCGTCGCTGGGTGGCCGAGGACGAGGAGT CCATCGACGAGAAGGAGCGCGCCCTCACCCGGATCGCCGAACAGACCTTCTGGACCGTCTTCGACGATGCCGCCCTGTCG TTGTCCACCGGTGGCATGAACCAGATGGTCGTCGGTCAGGAACCCGACGACGTCCGTGCCATGGTCGACACCCGCCCCGG ACTGCACTCCGCGGCCACCCTCGAGGAGCTCGCGCGGGCCGCGGGCATCGACGAGGCCGGCCTGGTTCAGACCGTGGCCG GCTACAACCGGGCCGTGGCCGAGGGGCACGATCCGGACTTCGGACGCACGTACCTCCCCGCGCCGATCGCCGCGCCACCC TTCTACGCGATCCGCAACCACGCGATCACCCTGGTGACCTTCCAGGGGCTCGACATCGACGCCTCGTTCGGCGTCCGGGA CGAGGCCGGCGAGGTGATCGCCGGGCTGTACGCCGTCGGTGAGGTGATCGGCGCCGGCGCCACGTGCGGCAACAGCTTCT GCTCGGGCATGCTGGTGACGCCGGCGCTGACCTTCGGTCGGCTCCTCGGCGCCAGGCTCGCCGACGCGCAGGCGCGGGCT CAGGCGTACTCGTAG
Upstream 100 bases:
>100_bases ATCGCCCGGTGCGCGCGGCTCGGGACGCGCGCGACCCACCCACCCCGGCCGCCGGGCGACCGGACACCGACCCCGCACCG TCAGGAGTTCAGCCATCAGC
Downstream 100 bases:
>100_bases AACCCGCGGCCGGTCTTGCGGCCCAGGAGGCCGGCCTCGACCATCCGCAGCAGCACCGGTGGGGCGAAGTAGAGCTGCTC CTTGAACTCCTCGTACATCG
Product: fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein
Products: NA
Alternate protein names: Fe(3+)-induced flavocytochrome C3; Ifc3; Iron(III)-induced flavocytochrome C3 [H]
Number of amino acids: Translated: 484; Mature: 484
Protein sequence:
>484_residues MQSDTTYDVVVVGAGTAGIPCAVHAAQGGARVLLVEKDSKIGGTLHVTGGHMAAAGTRRQAEHGIEDSPQAHLEDIRRIS QGTARDDLIRIVAEHAADTVDWLAERGFAFAPETPRIVYGHEPYTVARTYYGKDEGLSILEVLRPELERTQESYDLTVWT DAVVGELRTGDDGGVIGVSVLRAGSEVEVDADAVVLATGGYAADAELFEELEHAPLVSAAARTSTGDGLHLGLAAGARLQ GAGTHLPTFGGLPDPRNPNRANWSDRQRLTSERPPREIYVDRHGRRWVAEDEESIDEKERALTRIAEQTFWTVFDDAALS LSTGGMNQMVVGQEPDDVRAMVDTRPGLHSAATLEELARAAGIDEAGLVQTVAGYNRAVAEGHDPDFGRTYLPAPIAAPP FYAIRNHAITLVTFQGLDIDASFGVRDEAGEVIAGLYAVGEVIGAGATCGNSFCSGMLVTPALTFGRLLGARLADAQARA QAYS
Sequences:
>Translated_484_residues MQSDTTYDVVVVGAGTAGIPCAVHAAQGGARVLLVEKDSKIGGTLHVTGGHMAAAGTRRQAEHGIEDSPQAHLEDIRRIS QGTARDDLIRIVAEHAADTVDWLAERGFAFAPETPRIVYGHEPYTVARTYYGKDEGLSILEVLRPELERTQESYDLTVWT DAVVGELRTGDDGGVIGVSVLRAGSEVEVDADAVVLATGGYAADAELFEELEHAPLVSAAARTSTGDGLHLGLAAGARLQ GAGTHLPTFGGLPDPRNPNRANWSDRQRLTSERPPREIYVDRHGRRWVAEDEESIDEKERALTRIAEQTFWTVFDDAALS LSTGGMNQMVVGQEPDDVRAMVDTRPGLHSAATLEELARAAGIDEAGLVQTVAGYNRAVAEGHDPDFGRTYLPAPIAAPP FYAIRNHAITLVTFQGLDIDASFGVRDEAGEVIAGLYAVGEVIGAGATCGNSFCSGMLVTPALTFGRLLGARLADAQARA QAYS >Mature_484_residues MQSDTTYDVVVVGAGTAGIPCAVHAAQGGARVLLVEKDSKIGGTLHVTGGHMAAAGTRRQAEHGIEDSPQAHLEDIRRIS QGTARDDLIRIVAEHAADTVDWLAERGFAFAPETPRIVYGHEPYTVARTYYGKDEGLSILEVLRPELERTQESYDLTVWT DAVVGELRTGDDGGVIGVSVLRAGSEVEVDADAVVLATGGYAADAELFEELEHAPLVSAAARTSTGDGLHLGLAAGARLQ GAGTHLPTFGGLPDPRNPNRANWSDRQRLTSERPPREIYVDRHGRRWVAEDEESIDEKERALTRIAEQTFWTVFDDAALS LSTGGMNQMVVGQEPDDVRAMVDTRPGLHSAATLEELARAAGIDEAGLVQTVAGYNRAVAEGHDPDFGRTYLPAPIAAPP FYAIRNHAITLVTFQGLDIDASFGVRDEAGEVIAGLYAVGEVIGAGATCGNSFCSGMLVTPALTFGRLLGARLADAQARA QAYS
Specific function: Catalyzes unidirectional fumarate reduction using artificial electron donors such as methyl viologen. The physiological reductant is unknown [H]
COG id: COG1053
COG function: function code C; Succinate dehydrogenase/fumarate reductase, flavoprotein subunit
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 cytochrome c domain [H]
Homologues:
Organism=Caenorhabditis elegans, GI71986328, Length=489, Percent_Identity=27.6073619631902, Blast_Score=126, Evalue=3e-29,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003953 - InterPro: IPR013027 - InterPro: IPR010960 - InterPro: IPR011031 [H]
Pfam domain/function: PF00890 FAD_binding_2 [H]
EC number: =1.3.99.1 [H]
Molecular weight: Translated: 51444; Mature: 51444
Theoretical pI: Translated: 4.54; Mature: 4.54
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQSDTTYDVVVVGAGTAGIPCAVHAAQGGARVLLVEKDSKIGGTLHVTGGHMAAAGTRRQ CCCCCEEEEEEEECCCCCCCEEEEECCCCEEEEEEECCCCCCCEEEECCCCEECCCCHHH AEHGIEDSPQAHLEDIRRISQGTARDDLIRIVAEHAADTVDWLAERGFAFAPETPRIVYG HHCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCEEEEC HEPYTVARTYYGKDEGLSILEVLRPELERTQESYDLTVWTDAVVGELRTGDDGGVIGVSV CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCEEEEEHHHHHHCEECCCCCEEEEEE LRAGSEVEVDADAVVLATGGYAADAELFEELEHAPLVSAAARTSTGDGLHLGLAAGARLQ CCCCCCEEECCCEEEEEECCCCCCHHHHHHHHCCCHHHHHHCCCCCCCEEEEEECCCEEC GAGTHLPTFGGLPDPRNPNRANWSDRQRLTSERPPREIYVDRHGRRWVAEDEESIDEKER CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHHHHHH ALTRIAEQTFWTVFDDAALSLSTGGMNQMVVGQEPDDVRAMVDTRPGLHSAATLEELARA HHHHHHHHHHHHEECCCEEEEECCCCCEEEECCCCHHHHHHHCCCCCCCHHHHHHHHHHH AGIDEAGLVQTVAGYNRAVAEGHDPDFGRTYLPAPIAAPPFYAIRNHAITLVTFQGLDID CCCCHHHHHHHHHHCCHHHCCCCCCCCCCEECCCCCCCCCHHHHHCCEEEEEEEECCCCC ASFGVRDEAGEVIAGLYAVGEVIGAGATCGNSFCSGMLVTPALTFGRLLGARLADAQARA CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH QAYS HCCC >Mature Secondary Structure MQSDTTYDVVVVGAGTAGIPCAVHAAQGGARVLLVEKDSKIGGTLHVTGGHMAAAGTRRQ CCCCCEEEEEEEECCCCCCCEEEEECCCCEEEEEEECCCCCCCEEEECCCCEECCCCHHH AEHGIEDSPQAHLEDIRRISQGTARDDLIRIVAEHAADTVDWLAERGFAFAPETPRIVYG HHCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCEEEEC HEPYTVARTYYGKDEGLSILEVLRPELERTQESYDLTVWTDAVVGELRTGDDGGVIGVSV CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCEEEEEHHHHHHCEECCCCCEEEEEE LRAGSEVEVDADAVVLATGGYAADAELFEELEHAPLVSAAARTSTGDGLHLGLAAGARLQ CCCCCCEEECCCEEEEEECCCCCCHHHHHHHHCCCHHHHHHCCCCCCCEEEEEECCCEEC GAGTHLPTFGGLPDPRNPNRANWSDRQRLTSERPPREIYVDRHGRRWVAEDEESIDEKER CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHHHHHH ALTRIAEQTFWTVFDDAALSLSTGGMNQMVVGQEPDDVRAMVDTRPGLHSAATLEELARA HHHHHHHHHHHHEECCCEEEEECCCCCEEEECCCCHHHHHHHCCCCCCCHHHHHHHHHHH AGIDEAGLVQTVAGYNRAVAEGHDPDFGRTYLPAPIAAPPFYAIRNHAITLVTFQGLDID CCCCHHHHHHHHHHCCHHHCCCCCCCCCCEECCCCCCCCCHHHHHCCEEEEEEEECCCCC ASFGVRDEAGEVIAGLYAVGEVIGAGATCGNSFCSGMLVTPALTFGRLLGARLADAQARA CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH QAYS HCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10455032; 10581549 [H]