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The map label for this gene is ydeB [H]

Identifier: 119718259

GI number: 119718259

Start: 4263890

End: 4264375

Strand: Reverse

Name: ydeB [H]

Synonym: Noca_4040

Alternate gene names: 119718259

Gene position: 4264375-4263890 (Counterclockwise)

Preceding gene: 119718263

Following gene: 119718258

Centisome position: 85.53

GC content: 66.05

Gene sequence:

>486_bases
ATGACTTTCACCGTCGGCGAAACGGTTGTTTACCCGAATCACGGAGCCGCAGTCATCGAGGACATCGAGATGCGGAAGAT
CAAGGGAGAGGACCGGCAGTACCTCGTACTCCGTATCGTCGCCCAGCAGGACCTGGTGGTCAGAGTGCCCGCCTGCAACC
TCGATCTCGTCGGGGTGCGCGACGTCGTCGACAAGGAGGGCCTGGACCGTGTGTTCGACGTCCTCCGGGCCGCGCACGTC
GAGGAGCCGACGAACTGGTCGCGCCGCTACAAGGCCAACCTGGAGAAGCTGCACAGCGGCGACGTCATGAAGGTCGCCGA
GGTCGTGCGCGACCTGTGGCGCCGTGAGCGCGACCGTGGCCTGTCCGCCGGGGAGAAGCGGATGCTGGCCAAGGCCCGCC
AGATCCTGGTCTCCGAGCTGGCGCTGGCCGAGCACACCAACGAGGACAAGGCCGAGGCCCTCCTCGACGAGGTGCTCGCT
TCCTGA

Upstream 100 bases:

>100_bases
GATCTGTCAAGCCCGGATTGTGCCCCTGACCTGCGCAAACAGCCGGGAGCGGTTTCTCAGCGCGTGTTAAGATAGCCCCC
TAGGAAGGGGTACCTGACAT

Downstream 100 bases:

>100_bases
CCTGGTCATCGCGACGAGGCCCCCGGGGTGACCCCGGGGGCCTCGCTGCTTCCCGGGGTGAGACGTCATACCTTGTGGGG
GCCATGACCCACGATCCGTA

Product: CarD family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 161; Mature: 160

Protein sequence:

>161_residues
MTFTVGETVVYPNHGAAVIEDIEMRKIKGEDRQYLVLRIVAQQDLVVRVPACNLDLVGVRDVVDKEGLDRVFDVLRAAHV
EEPTNWSRRYKANLEKLHSGDVMKVAEVVRDLWRRERDRGLSAGEKRMLAKARQILVSELALAEHTNEDKAEALLDEVLA
S

Sequences:

>Translated_161_residues
MTFTVGETVVYPNHGAAVIEDIEMRKIKGEDRQYLVLRIVAQQDLVVRVPACNLDLVGVRDVVDKEGLDRVFDVLRAAHV
EEPTNWSRRYKANLEKLHSGDVMKVAEVVRDLWRRERDRGLSAGEKRMLAKARQILVSELALAEHTNEDKAEALLDEVLA
S
>Mature_160_residues
TFTVGETVVYPNHGAAVIEDIEMRKIKGEDRQYLVLRIVAQQDLVVRVPACNLDLVGVRDVVDKEGLDRVFDVLRAAHVE
EPTNWSRRYKANLEKLHSGDVMKVAEVVRDLWRRERDRGLSAGEKRMLAKARQILVSELALAEHTNEDKAEALLDEVLAS

Specific function: Unknown

COG id: COG1329

COG function: function code K; Transcriptional regulators, similar to M. xanthus CarD

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003711 [H]

Pfam domain/function: PF02559 CarD_TRCF [H]

EC number: NA

Molecular weight: Translated: 18258; Mature: 18127

Theoretical pI: Translated: 5.72; Mature: 5.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTFTVGETVVYPNHGAAVIEDIEMRKIKGEDRQYLVLRIVAQQDLVVRVPACNLDLVGVR
CEEECCCEEEECCCCCHHHHHHHHHHCCCCCHHEEEHEEECCCCEEEECCCCCEEECCHH
DVVDKEGLDRVFDVLRAAHVEEPTNWSRRYKANLEKLHSGDVMKVAEVVRDLWRRERDRG
HHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC
LSAGEKRMLAKARQILVSELALAEHTNEDKAEALLDEVLAS
CCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC
>Mature Secondary Structure 
TFTVGETVVYPNHGAAVIEDIEMRKIKGEDRQYLVLRIVAQQDLVVRVPACNLDLVGVR
EEECCCEEEECCCCCHHHHHHHHHHCCCCCHHEEEHEEECCCCEEEECCCCCEEECCHH
DVVDKEGLDRVFDVLRAAHVEEPTNWSRRYKANLEKLHSGDVMKVAEVVRDLWRRERDRG
HHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC
LSAGEKRMLAKARQILVSELALAEHTNEDKAEALLDEVLAS
CCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]