BacMap

Definition	Nocardioides sp. JS614 chromosome, complete genome.
Accession	NC_008699
Length	4,985,871

Click here to switch to the map view.

The map label for this gene is fabG [H]

Identifier: 119718228

GI number: 119718228

Start: 4231597

End: 4232319

Strand: Reverse

Name: fabG [H]

Synonym: Noca_4009

Alternate gene names: 119718228

Gene position: 4232319-4231597 (Counterclockwise)

Preceding gene: 119718229

Following gene: 119718226

Centisome position: 84.89

GC content: 72.06

Gene sequence:

>723_bases
ATGAACCAGCCCGGCAGTCGCGTCGTCGTCGTCACCGGAGCCGCGTCCGGCATCGGGCACGCGACGGCGGCGCTGTTCCG
CGACCTCGGCGACACCGTCTACGGCCTGGACCTCCGGCCGACCGTGCCCGACGGCGTCACCTACGTGGAGTGCAACGTCG
GCGACCGGGCCTCGGTGCTCGCCGCCGTCGAGACCTGCGCGGCCGACGGCCGGATCGACGTGCTGGCCAATGTCGCCGGC
ATCGTCCAGTTCGGCCGGATCGAGACGGTGACCGAGGAGGAGTGGGACCGGGTCCACGCGGTCGACCTCAAGGGCCCGTT
CCTGCTGATCCAGGCCGCGCTGCCGCACCTGCGCGCCTGCGGCGGCAACATCGTCAACGTCTCGTCCGTCGCCGGCCACA
AGGCGCAGCCCTACGCCACGGCGTACGCGGCCGCCAAGGGCGGACTCACCCAGCTCACCCGCGCGCTCGCGCTCGAGCTC
GCGCCGGAGGGGATCCGGGTCAACGCGATCTGCCCGGGCACCGTGGACACGCCGATCGTCGAGCAGGTCTTCCACAAGCT
CACCGACGACCTCGACACCCGGGTCGCCGACCGGCTGATGATGATGCTGCCCGGCGGCGCGATCCGGCCCGACGAGATCG
GCTCCGCGATCGTCTACCTCGCCTCGCCGCAGGCGCGGATGATCACCGGCGAGATCCTGGCCTTCGACGGCGGGATGAGC
TGA

Upstream 100 bases:

>100_bases
GTTCGGCGTCGGGCGCTCGGGCGTCCTGGAGCACCACCTCACGATCGCCCTCTGACTCGCTTCCTGACTCTCGCTGATCC
CGCGTCGAAAGGCCCACCCC

Downstream 100 bases:

>100_bases
GCCGCCGCTGTCGGGTCGTGTGCCTGAGGACGCGCCATGGCGCGTCCTCAGGCACACGACCCGTAGCATGTGGCCTCGCC
GCGCCGGTGTAGCTCAGTTG

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: 3-ketoacyl-acyl carrier protein reductase [H]

Number of amino acids: Translated: 240; Mature: 240

Protein sequence:

>240_residues
MNQPGSRVVVVTGAASGIGHATAALFRDLGDTVYGLDLRPTVPDGVTYVECNVGDRASVLAAVETCAADGRIDVLANVAG
IVQFGRIETVTEEEWDRVHAVDLKGPFLLIQAALPHLRACGGNIVNVSSVAGHKAQPYATAYAAAKGGLTQLTRALALEL
APEGIRVNAICPGTVDTPIVEQVFHKLTDDLDTRVADRLMMMLPGGAIRPDEIGSAIVYLASPQARMITGEILAFDGGMS

Sequences:

>Translated_240_residues
MNQPGSRVVVVTGAASGIGHATAALFRDLGDTVYGLDLRPTVPDGVTYVECNVGDRASVLAAVETCAADGRIDVLANVAG
IVQFGRIETVTEEEWDRVHAVDLKGPFLLIQAALPHLRACGGNIVNVSSVAGHKAQPYATAYAAAKGGLTQLTRALALEL
APEGIRVNAICPGTVDTPIVEQVFHKLTDDLDTRVADRLMMMLPGGAIRPDEIGSAIVYLASPQARMITGEILAFDGGMS
>Mature_240_residues
MNQPGSRVVVVTGAASGIGHATAALFRDLGDTVYGLDLRPTVPDGVTYVECNVGDRASVLAAVETCAADGRIDVLANVAG
IVQFGRIETVTEEEWDRVHAVDLKGPFLLIQAALPHLRACGGNIVNVSSVAGHKAQPYATAYAAAKGGLTQLTRALALEL
APEGIRVNAICPGTVDTPIVEQVFHKLTDDLDTRVADRLMMMLPGGAIRPDEIGSAIVYLASPQARMITGEILAFDGGMS

Specific function: Siderophore biosynthesis; enterobactin biosynthesis. [C]

COG id: COG1028

COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI15277342, Length=262, Percent_Identity=32.824427480916, Blast_Score=109, Evalue=2e-24,
Organism=Homo sapiens, GI66933014, Length=172, Percent_Identity=36.046511627907, Blast_Score=104, Evalue=7e-23,
Organism=Homo sapiens, GI59889578, Length=196, Percent_Identity=35.2040816326531, Blast_Score=102, Evalue=3e-22,
Organism=Homo sapiens, GI5031737, Length=248, Percent_Identity=32.258064516129, Blast_Score=98, Evalue=6e-21,
Organism=Homo sapiens, GI32483357, Length=249, Percent_Identity=30.5220883534137, Blast_Score=97, Evalue=1e-20,
Organism=Homo sapiens, GI19923817, Length=255, Percent_Identity=29.4117647058824, Blast_Score=93, Evalue=3e-19,
Organism=Homo sapiens, GI33667109, Length=188, Percent_Identity=35.6382978723404, Blast_Score=88, Evalue=9e-18,
Organism=Homo sapiens, GI7705925, Length=243, Percent_Identity=32.0987654320988, Blast_Score=87, Evalue=1e-17,
Organism=Homo sapiens, GI40254992, Length=250, Percent_Identity=32.8, Blast_Score=87, Evalue=1e-17,
Organism=Homo sapiens, GI4758504, Length=258, Percent_Identity=29.4573643410853, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI10190704, Length=254, Percent_Identity=29.1338582677165, Blast_Score=79, Evalue=5e-15,
Organism=Homo sapiens, GI31542939, Length=197, Percent_Identity=30.4568527918782, Blast_Score=79, Evalue=5e-15,
Organism=Homo sapiens, GI4504505, Length=189, Percent_Identity=32.8042328042328, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI126723191, Length=181, Percent_Identity=32.5966850828729, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI44680136, Length=189, Percent_Identity=28.5714285714286, Blast_Score=75, Evalue=4e-14,
Organism=Homo sapiens, GI44680133, Length=189, Percent_Identity=28.5714285714286, Blast_Score=75, Evalue=4e-14,
Organism=Homo sapiens, GI17738292, Length=189, Percent_Identity=28.5714285714286, Blast_Score=75, Evalue=4e-14,
Organism=Homo sapiens, GI126723750, Length=251, Percent_Identity=27.4900398406374, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI302344755, Length=103, Percent_Identity=38.8349514563107, Blast_Score=72, Evalue=6e-13,
Organism=Homo sapiens, GI20149619, Length=193, Percent_Identity=30.5699481865285, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI223718074, Length=203, Percent_Identity=31.5270935960591, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI4504503, Length=201, Percent_Identity=27.363184079602, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI142976729, Length=212, Percent_Identity=26.4150943396226, Blast_Score=67, Evalue=2e-11,
Organism=Escherichia coli, GI1786812, Length=240, Percent_Identity=35, Blast_Score=121, Evalue=3e-29,
Organism=Escherichia coli, GI87082100, Length=252, Percent_Identity=33.7301587301587, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI1787335, Length=252, Percent_Identity=32.5396825396825, Blast_Score=104, Evalue=5e-24,
Organism=Escherichia coli, GI1788459, Length=250, Percent_Identity=34.4, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1790717, Length=247, Percent_Identity=30.3643724696356, Blast_Score=93, Evalue=1e-20,
Organism=Escherichia coli, GI1789208, Length=245, Percent_Identity=28.9795918367347, Blast_Score=91, Evalue=9e-20,
Organism=Escherichia coli, GI2367175, Length=254, Percent_Identity=33.4645669291339, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1789378, Length=258, Percent_Identity=27.906976744186, Blast_Score=83, Evalue=1e-17,
Organism=Escherichia coli, GI87082160, Length=246, Percent_Identity=28.0487804878049, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI2367365, Length=242, Percent_Identity=28.9256198347107, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787905, Length=248, Percent_Identity=24.5967741935484, Blast_Score=66, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI71994604, Length=253, Percent_Identity=34.7826086956522, Blast_Score=115, Evalue=3e-26,
Organism=Caenorhabditis elegans, GI71994600, Length=256, Percent_Identity=34.375, Blast_Score=112, Evalue=1e-25,
Organism=Caenorhabditis elegans, GI17560676, Length=251, Percent_Identity=31.4741035856574, Blast_Score=110, Evalue=8e-25,
Organism=Caenorhabditis elegans, GI17555706, Length=247, Percent_Identity=31.5789473684211, Blast_Score=105, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI25147288, Length=253, Percent_Identity=31.6205533596838, Blast_Score=104, Evalue=5e-23,
Organism=Caenorhabditis elegans, GI17561402, Length=249, Percent_Identity=32.1285140562249, Blast_Score=103, Evalue=9e-23,
Organism=Caenorhabditis elegans, GI72000259, Length=266, Percent_Identity=33.4586466165414, Blast_Score=102, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI17562910, Length=266, Percent_Identity=30.8270676691729, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI17531453, Length=259, Percent_Identity=33.2046332046332, Blast_Score=94, Evalue=7e-20,
Organism=Caenorhabditis elegans, GI17562904, Length=274, Percent_Identity=33.5766423357664, Blast_Score=93, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI17562908, Length=266, Percent_Identity=31.9548872180451, Blast_Score=93, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI17560332, Length=267, Percent_Identity=33.3333333333333, Blast_Score=92, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17563726, Length=268, Percent_Identity=29.8507462686567, Blast_Score=91, Evalue=4e-19,
Organism=Caenorhabditis elegans, GI17559104, Length=275, Percent_Identity=31.6363636363636, Blast_Score=91, Evalue=5e-19,
Organism=Caenorhabditis elegans, GI17538486, Length=265, Percent_Identity=30.9433962264151, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17562906, Length=266, Percent_Identity=30.0751879699248, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17551412, Length=263, Percent_Identity=28.8973384030418, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI115534694, Length=168, Percent_Identity=34.5238095238095, Blast_Score=84, Evalue=5e-17,
Organism=Caenorhabditis elegans, GI17562990, Length=261, Percent_Identity=28.3524904214559, Blast_Score=84, Evalue=6e-17,
Organism=Caenorhabditis elegans, GI193204405, Length=262, Percent_Identity=29.7709923664122, Blast_Score=84, Evalue=9e-17,
Organism=Caenorhabditis elegans, GI17538182, Length=254, Percent_Identity=28.740157480315, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17544670, Length=279, Percent_Identity=27.5985663082437, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17560220, Length=263, Percent_Identity=29.277566539924, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17538480, Length=268, Percent_Identity=27.6119402985075, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17560150, Length=256, Percent_Identity=29.6875, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI17565030, Length=258, Percent_Identity=31.3953488372093, Blast_Score=80, Evalue=8e-16,
Organism=Caenorhabditis elegans, GI17508651, Length=159, Percent_Identity=30.188679245283, Blast_Score=71, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17568967, Length=238, Percent_Identity=28.5714285714286, Blast_Score=70, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI71982365, Length=192, Percent_Identity=30.7291666666667, Blast_Score=68, Evalue=4e-12,
Organism=Saccharomyces cerevisiae, GI6324126, Length=185, Percent_Identity=31.3513513513514, Blast_Score=75, Evalue=1e-14,
Organism=Saccharomyces cerevisiae, GI6322861, Length=189, Percent_Identity=33.3333333333333, Blast_Score=71, Evalue=1e-13,
Organism=Saccharomyces cerevisiae, GI6323882, Length=250, Percent_Identity=25.2, Blast_Score=64, Evalue=3e-11,
Organism=Drosophila melanogaster, GI21357041, Length=248, Percent_Identity=36.6935483870968, Blast_Score=125, Evalue=3e-29,
Organism=Drosophila melanogaster, GI28571526, Length=257, Percent_Identity=36.9649805447471, Blast_Score=123, Evalue=1e-28,
Organism=Drosophila melanogaster, GI23397609, Length=243, Percent_Identity=37.8600823045267, Blast_Score=123, Evalue=1e-28,
Organism=Drosophila melanogaster, GI24644339, Length=258, Percent_Identity=37.2093023255814, Blast_Score=122, Evalue=2e-28,
Organism=Drosophila melanogaster, GI24639444, Length=248, Percent_Identity=32.6612903225806, Blast_Score=102, Evalue=2e-22,
Organism=Drosophila melanogaster, GI21355319, Length=267, Percent_Identity=29.5880149812734, Blast_Score=99, Evalue=4e-21,
Organism=Drosophila melanogaster, GI24644337, Length=177, Percent_Identity=36.7231638418079, Blast_Score=96, Evalue=2e-20,
Organism=Drosophila melanogaster, GI24643142, Length=240, Percent_Identity=31.25, Blast_Score=92, Evalue=3e-19,
Organism=Drosophila melanogaster, GI18859837, Length=185, Percent_Identity=34.5945945945946, Blast_Score=78, Evalue=6e-15,
Organism=Drosophila melanogaster, GI17737361, Length=258, Percent_Identity=29.0697674418605, Blast_Score=74, Evalue=8e-14,
Organism=Drosophila melanogaster, GI24641232, Length=248, Percent_Identity=29.0322580645161, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI281364892, Length=189, Percent_Identity=31.7460317460317, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24665243, Length=212, Percent_Identity=29.7169811320755, Blast_Score=67, Evalue=9e-12,
Organism=Drosophila melanogaster, GI221331218, Length=212, Percent_Identity=29.7169811320755, Blast_Score=67, Evalue=9e-12,
Organism=Drosophila melanogaster, GI116007236, Length=197, Percent_Identity=28.9340101522843, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24665247, Length=213, Percent_Identity=30.9859154929577, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI221331216, Length=213, Percent_Identity=30.9859154929577, Blast_Score=65, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011284
- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: =1.1.1.100 [H]

Molecular weight: Translated: 25087; Mature: 25087

Theoretical pI: Translated: 4.75; Mature: 4.75

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQPGSRVVVVTGAASGIGHATAALFRDLGDTVYGLDLRPTVPDGVTYVECNVGDRASVL
CCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCEEECCCCCCCCCCEEEEEECCCCHHHHH
AAVETCAADGRIDVLANVAGIVQFGRIETVTEEEWDRVHAVDLKGPFLLIQAALPHLRAC
HHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCHHHCCCEEEEECCCCEEHHHHHHHHHHHC
GGNIVNVSSVAGHKAQPYATAYAAAKGGLTQLTRALALELAPEGIRVNAICPGTVDTPIV
CCCEEEEHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHH
EQVFHKLTDDLDTRVADRLMMMLPGGAIRPDEIGSAIVYLASPQARMITGEILAFDGGMS
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCEEEEEECCCCEEEEEEEEEECCCCC
>Mature Secondary Structure
MNQPGSRVVVVTGAASGIGHATAALFRDLGDTVYGLDLRPTVPDGVTYVECNVGDRASVL
CCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCEEECCCCCCCCCCEEEEEECCCCHHHHH
AAVETCAADGRIDVLANVAGIVQFGRIETVTEEEWDRVHAVDLKGPFLLIQAALPHLRAC
HHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCHHHCCCEEEEECCCCEEHHHHHHHHHHHC
GGNIVNVSSVAGHKAQPYATAYAAAKGGLTQLTRALALELAPEGIRVNAICPGTVDTPIV
CCCEEEEHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHH
EQVFHKLTDDLDTRVADRLMMMLPGGAIRPDEIGSAIVYLASPQARMITGEILAFDGGMS
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCEEEEEECCCCEEEEEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10360571 [H]