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The map label for this gene is cspA [H]

Identifier: 119718152

GI number: 119718152

Start: 4139022

End: 4139417

Strand: Reverse

Name: cspA [H]

Synonym: Noca_3932

Alternate gene names: 119718152

Gene position: 4139417-4139022 (Counterclockwise)

Preceding gene: 119718153

Following gene: 119718150

Centisome position: 83.02

GC content: 72.47

Gene sequence:

>396_bases
GTGCCCACTGGCAAGGTGAAGTGGTTCGACGCGGAGAAGGGCTTCGGCTTCCTCTCCCAGGAGAACGGTCCCGACGTCTA
CGTGCGCAGCGAGGCCCTCCCCGCCGGCACGTCGAGCCTCAAGGCCGGCACCCGCGTCGAGTTCGGGATCGCCCAGGGCC
GGCGCGGCGACCAGGCCCTCCAGGTGCGGATCCTGGACGCGCCCGCGTCGGTCTCGCGCAACCAGCGCGACGCGCGGCGC
AAGAAGCCCGAGGAGATGGTCACCATCGTCGAGGACCTGATCCGACTGCTCGACGGCGTCGGCGAGGCCTACCGCCACGG
TCGGCACCCCGACCCCAAGACCGCCCGCCCGGCCGCCAAGCTGCTCCGCGCCCTGGCCGACGAGCTCGAGCACTGA

Upstream 100 bases:

>100_bases
GGACCGGCGCGGGTTCCGTTCGGGGTCGATGAACGAGGCGCTATAGGCTGGAGCGCCCCGGTCCGACAGCGGTCCCGAAC
AAGCTAGAAGAGGTCAGTCC

Downstream 100 bases:

>100_bases
CCGTTTGACTCAGAAGTCCCGGATCAACCTGCGCGGGTGGTTGGCGAGCACGAACACCGCCCAGGCGGCGAGCACGACCG
CGGCGACGCCTAGCCCGAGC

Product: cold-shock DNA-binding protein family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 131; Mature: 130

Protein sequence:

>131_residues
MPTGKVKWFDAEKGFGFLSQENGPDVYVRSEALPAGTSSLKAGTRVEFGIAQGRRGDQALQVRILDAPASVSRNQRDARR
KKPEEMVTIVEDLIRLLDGVGEAYRHGRHPDPKTARPAAKLLRALADELEH

Sequences:

>Translated_131_residues
MPTGKVKWFDAEKGFGFLSQENGPDVYVRSEALPAGTSSLKAGTRVEFGIAQGRRGDQALQVRILDAPASVSRNQRDARR
KKPEEMVTIVEDLIRLLDGVGEAYRHGRHPDPKTARPAAKLLRALADELEH
>Mature_130_residues
PTGKVKWFDAEKGFGFLSQENGPDVYVRSEALPAGTSSLKAGTRVEFGIAQGRRGDQALQVRILDAPASVSRNQRDARRK
KPEEMVTIVEDLIRLLDGVGEAYRHGRHPDPKTARPAAKLLRALADELEH

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 14460; Mature: 14328

Theoretical pI: Translated: 10.00; Mature: 10.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTGKVKWFDAEKGFGFLSQENGPDVYVRSEALPAGTSSLKAGTRVEFGIAQGRRGDQAL
CCCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCEEEECCCCCCCCCCEE
QVRILDAPASVSRNQRDARRKKPEEMVTIVEDLIRLLDGVGEAYRHGRHPDPKTARPAAK
EEEEECCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHH
LLRALADELEH
HHHHHHHHHCC
>Mature Secondary Structure 
PTGKVKWFDAEKGFGFLSQENGPDVYVRSEALPAGTSSLKAGTRVEFGIAQGRRGDQAL
CCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCEEEECCCCCCCCCCEE
QVRILDAPASVSRNQRDARRKKPEEMVTIVEDLIRLLDGVGEAYRHGRHPDPKTARPAAK
EEEEECCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHH
LLRALADELEH
HHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11296296 [H]