| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
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The map label for this gene is 119718146
Identifier: 119718146
GI number: 119718146
Start: 4132924
End: 4134297
Strand: Reverse
Name: 119718146
Synonym: Noca_3926
Alternate gene names: NA
Gene position: 4134297-4132924 (Counterclockwise)
Preceding gene: 119718147
Following gene: 119718145
Centisome position: 82.92
GC content: 70.01
Gene sequence:
>1374_bases GTGAGCCCCACGTTCCGCTCCCTGCGCAACCCGAACTACCGGCGCTACCTCGCCGGCAGCCTGGTGTCCAACACCGGGAC CTGGATGCAACGGGTGGCCCAGGACTGGCTGGTGCTCCAGCTGCCGGGCAACAGCGGCAGCGAGCTCGGGATCACCACCG GGCTGCAGTTCCTGCCGATCCTGCTGCTGAGCCCCTACGCCGGGGTCGTCGCGGACCGGTTCCCGAAGCGCCGGCTGCTG CAGGTCACCCAGGCGACGATGGCGCTCGCGTCGCTGGCGCTCGGCCTGATCGCGGTGCTCGGGGTCGCGCAGACCTGGCA CGTCTACCTGATCGCGTTCCTCTTCGGCATCGGCGCGGCCTTCGACGGTCCGGCCCGACAGTCGTTCGTCTCCGAGATGG TCGGCCCCGAGGACCTCACCAACGCGGTGGGCCTGAACTCCGCGAGCTTCAACGCCGCCCGGATCCTCGGCCCGGCCGTC GCCGGCCTGATGATCGGCGCGCTCGGCGGTGGCGCGCAGGCGACCGGCTGGGTGATCCTCGTCAACGCCGCGTCGTACCT CGCCGTGATCGGCCAGCTCCAGCGGATGGACGTGGTGCTGCTGCATCCGGCCGAGATCCAGGACCGCACGCCCGGCATGC TCGTCGACGGCGTCCGCTACGTGCGCAGCCAGCCCAAGATGGTGCTGATCCTGATCATGGTCTTCTTCGCCGGCACCTTC GGCATGAACTTCCAGATCACGTCGGCGCTGATGGCCACCGAGGTGTTCGGCAAGGGCGCGGGGGAGTACGGCGTCCTCGG CTCGGCGCTCGCGGTCGGGTCGCTGACCGGGGCGCTGCTGACCGCCCGGCGAGTCCAGATCCGGGTCCGGCTGCTGGTGC TCGCCGCGCTCGGCTTCGGCACCGCCGAGATCATCGGTGGCCTGCTCCCGTCGTACCTGTTGTTCGCGCTGTTCTCACCG GTCATCGGGTTCTTCACGCTGACCCTGCTCAGCTCGGCGAACGCCACCCTCCAGCTGGAGGCCGCCCCGGCGTTCCGCGG CCGGGTGATGGCCCTCTACATGACCATCCTGATGGGCGGCACCCCGATCGGCGCGCCCATCATCGGCTGGGTCGCCCAGC ACCTCGGTGCCCGGTGGGGCCTGATCATCGGCGGGACGCTGACCATCCTCGGCGTACTGTTGGCGCTGGCCGCCCATTCC CGCCTCCGCGGCGGGGTGCGCACCGTTTTGACCGAGGTAGACCACCCGGGTAACCTTTTTCCTCGTGTCTGGGACAACCA GGCCGTCGCGCGTGCCCGGAAGCAGTCGGGGAGTCAGGTCCTCGGATCCGGCACCGAAACTCCAGCAGCGGAAGCCCTCA CCGGTTCTCGCTGA
Upstream 100 bases:
>100_bases AGGAGCTGACGCCCGACGAGCGGGCGATCCTCCGCCAGGCGGCCCCCCTCCTCGAGCACCTTGCCCAACGAGACTGACCA GAAGGACTGACCACCACACT
Downstream 100 bases:
>100_bases AGCAGTGTGGAGCGGGCGACACGCCCGACCTCGGGGGTGGCGACGAGGGCCAGCACCACCCGGACACGCAGCAAGACACC GTGCGAGCAGAGCGCCCGTA
Product: major facilitator transporter
Products: NA
Alternate protein names: Facilitator Superfamily Protein; Integral Membrane Efflux Protein; Transmembrane Efflux Protein; Facilitator Superfamily Permease; Arabinose Efflux Permease Family Protein; Facilitator Superfamily Transporter; Multidrug ABC Transporter; MFS Permease; Macrolide-Efflux Protein; Permeases Of Facilitator Superfamily; Permease; Mfs Transporter; Transporter Facilitator Family Protein; Drug Resistance Efflux Protein; MFS Family Transporter Protein; Facilitator Superfamily; Transporter Facilitator Family; Arabinose Efflux Permease; Permease Of Facilitator Superfamily Protein; Facilitator MFS1 Protein; ABC Transporter Permease Protein; Pimh Protein; MFS Family Membrane Efflux Protein; Facilitator Superfamily Multidrug Efflux Transporter; Permease Of Facilitator Superfamily; Membrane Efflux Protein MFS; MFS Family Transporter; Transport Transmembrane Protein; MFS Superfamily Transporter; Permeases Of Facilitator Superfamily Protein
Number of amino acids: Translated: 457; Mature: 456
Protein sequence:
>457_residues MSPTFRSLRNPNYRRYLAGSLVSNTGTWMQRVAQDWLVLQLPGNSGSELGITTGLQFLPILLLSPYAGVVADRFPKRRLL QVTQATMALASLALGLIAVLGVAQTWHVYLIAFLFGIGAAFDGPARQSFVSEMVGPEDLTNAVGLNSASFNAARILGPAV AGLMIGALGGGAQATGWVILVNAASYLAVIGQLQRMDVVLLHPAEIQDRTPGMLVDGVRYVRSQPKMVLILIMVFFAGTF GMNFQITSALMATEVFGKGAGEYGVLGSALAVGSLTGALLTARRVQIRVRLLVLAALGFGTAEIIGGLLPSYLLFALFSP VIGFFTLTLLSSANATLQLEAAPAFRGRVMALYMTILMGGTPIGAPIIGWVAQHLGARWGLIIGGTLTILGVLLALAAHS RLRGGVRTVLTEVDHPGNLFPRVWDNQAVARARKQSGSQVLGSGTETPAAEALTGSR
Sequences:
>Translated_457_residues MSPTFRSLRNPNYRRYLAGSLVSNTGTWMQRVAQDWLVLQLPGNSGSELGITTGLQFLPILLLSPYAGVVADRFPKRRLL QVTQATMALASLALGLIAVLGVAQTWHVYLIAFLFGIGAAFDGPARQSFVSEMVGPEDLTNAVGLNSASFNAARILGPAV AGLMIGALGGGAQATGWVILVNAASYLAVIGQLQRMDVVLLHPAEIQDRTPGMLVDGVRYVRSQPKMVLILIMVFFAGTF GMNFQITSALMATEVFGKGAGEYGVLGSALAVGSLTGALLTARRVQIRVRLLVLAALGFGTAEIIGGLLPSYLLFALFSP VIGFFTLTLLSSANATLQLEAAPAFRGRVMALYMTILMGGTPIGAPIIGWVAQHLGARWGLIIGGTLTILGVLLALAAHS RLRGGVRTVLTEVDHPGNLFPRVWDNQAVARARKQSGSQVLGSGTETPAAEALTGSR >Mature_456_residues SPTFRSLRNPNYRRYLAGSLVSNTGTWMQRVAQDWLVLQLPGNSGSELGITTGLQFLPILLLSPYAGVVADRFPKRRLLQ VTQATMALASLALGLIAVLGVAQTWHVYLIAFLFGIGAAFDGPARQSFVSEMVGPEDLTNAVGLNSASFNAARILGPAVA GLMIGALGGGAQATGWVILVNAASYLAVIGQLQRMDVVLLHPAEIQDRTPGMLVDGVRYVRSQPKMVLILIMVFFAGTFG MNFQITSALMATEVFGKGAGEYGVLGSALAVGSLTGALLTARRVQIRVRLLVLAALGFGTAEIIGGLLPSYLLFALFSPV IGFFTLTLLSSANATLQLEAAPAFRGRVMALYMTILMGGTPIGAPIIGWVAQHLGARWGLIIGGTLTILGVLLALAAHSR LRGGVRTVLTEVDHPGNLFPRVWDNQAVARARKQSGSQVLGSGTETPAAEALTGSR
Specific function: Unknown
COG id: COG0477
COG function: function code GEPR; Permeases of the major facilitator superfamily
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 48135; Mature: 48004
Theoretical pI: Translated: 10.95; Mature: 10.95
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSPTFRSLRNPNYRRYLAGSLVSNTGTWMQRVAQDWLVLQLPGNSGSELGITTGLQFLPI CCCCHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHCCEEEEECCCCCCCCCHHHHHHHHHH LLLSPYAGVVADRFPKRRLLQVTQATMALASLALGLIAVLGVAQTWHVYLIAFLFGIGAA HHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC FDGPARQSFVSEMVGPEDLTNAVGLNSASFNAARILGPAVAGLMIGALGGGAQATGWVIL CCCHHHHHHHHHHCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEE VNAASYLAVIGQLQRMDVVLLHPAEIQDRTPGMLVDGVRYVRSQPKMVLILIMVFFAGTF EEHHHHHHHHHHHHHCCEEEECCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHC GMNFQITSALMATEVFGKGAGEYGVLGSALAVGSLTGALLTARRVQIRVRLLVLAALGFG CCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC TAEIIGGLLPSYLLFALFSPVIGFFTLTLLSSANATLQLEAAPAFRGRVMALYMTILMGG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHCC TPIGAPIIGWVAQHLGARWGLIIGGTLTILGVLLALAAHSRLRGGVRTVLTEVDHPGNLF CCCCHHHHHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC PRVWDNQAVARARKQSGSQVLGSGTETPAAEALTGSR CCCCCCHHHHHHHHHCCCEECCCCCCCCHHHHCCCCC >Mature Secondary Structure SPTFRSLRNPNYRRYLAGSLVSNTGTWMQRVAQDWLVLQLPGNSGSELGITTGLQFLPI CCCHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHCCEEEEECCCCCCCCCHHHHHHHHHH LLLSPYAGVVADRFPKRRLLQVTQATMALASLALGLIAVLGVAQTWHVYLIAFLFGIGAA HHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC FDGPARQSFVSEMVGPEDLTNAVGLNSASFNAARILGPAVAGLMIGALGGGAQATGWVIL CCCHHHHHHHHHHCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEE VNAASYLAVIGQLQRMDVVLLHPAEIQDRTPGMLVDGVRYVRSQPKMVLILIMVFFAGTF EEHHHHHHHHHHHHHCCEEEECCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHC GMNFQITSALMATEVFGKGAGEYGVLGSALAVGSLTGALLTARRVQIRVRLLVLAALGFG CCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC TAEIIGGLLPSYLLFALFSPVIGFFTLTLLSSANATLQLEAAPAFRGRVMALYMTILMGG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHCC TPIGAPIIGWVAQHLGARWGLIIGGTLTILGVLLALAAHSRLRGGVRTVLTEVDHPGNLF CCCCHHHHHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC PRVWDNQAVARARKQSGSQVLGSGTETPAAEALTGSR CCCCCCHHHHHHHHHCCCEECCCCCCCCHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA