| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
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The map label for this gene is 119718025
Identifier: 119718025
GI number: 119718025
Start: 4017647
End: 4019506
Strand: Reverse
Name: 119718025
Synonym: Noca_3803
Alternate gene names: NA
Gene position: 4019506-4017647 (Counterclockwise)
Preceding gene: 119718027
Following gene: 119718024
Centisome position: 80.62
GC content: 77.63
Gene sequence:
>1860_bases GTGGAGGGGTGTGACGTGGGAGCTGGCGAGGAGCCGGAGCGGCGCCTGGACCGGGTGGTGCTCGGGTCCGGTGAGGCGCC GGAGGACCGGCTGGCGGCCACCGCCGCCGGACTCGCTGTCGGCGGTCTGCGGATCACCGTGACCGGCACGGACGACACGG TGCTCGAGAAGACCCGCGACCGGCTCGGGGTGGTGCTCACGCCGCGGGATCCGGCGGCCCAAGTGGCGGACCCGGCACTG CGGTGGCTGCCGCTGCCGGTGCGCGGGGACCTGCCGCTGACCACCGAGGAGCTGCAGCGCCTCGTCCGCCTGTTCGCCCG CACGACGCCCGAGCACGAGCGCCGACGGCGGCAGGCGTTCCCGCCCGTGGAGGCCGTCCCGACCGACGAGGAGGTGCGCG TCCTCGCCGACCGGGTGACCCGGGGCGACCTGGCCGCCCGGCAGCTCGACCCCAGCCTCCGCGAGGTCCTGGAGCGCGCC GACGCCAGCGAGGTCCTCGCCACCATCCGCGAGGTCAAGGCTCGACTCGGTGAGGTGCTGCGGCACCGGCGCGCCTGGGT GGTCCGGGTGGTCGATGTGGCGCTCGGCGACCCCGGGGCCGAGACCTGGCAGCGCCTGTCGGCCCACGCCGACGGCATCG AGCACCTGCTCCGGTCGCTCGCCGAGCTCGGCGACGCCGTGGTCGAGGGGGTCGAACCCTCCGAGGAGGCGGCCCAGGCC TTCGGCGCCCTGCAGGACGAGCTCGCCGCGGGGCAGCCCGCGCGACGATGGTTCCGGGGTCGGACGCAGCGGACGGCCGC CCGCCTGCTCGAGAGCGCTCGGGTGGACGGCGAGCCGGTCACCGACGTCGCCGGCGCGTCCACCGTACGGCGCTTCCTCG AGGTCGCCGCCGAGTCGGCGGACCTGGGGCAGCAGCTGGGCTCGCTCGGGGTGCCGGTGCCCCCGGACACGCCGCGGGAC GGGATGGTCGCCGGGTACGCCGAGGTGCTGGAGGCACTGCGCGCGATCTCCCGGCTGGTCGACGTCTCCCGGCGCCTGGT CCAGGTGCTCGGACCGGGGCCGGTGGAGGAGCTGCCGGTCGCCTCGCTCGAGGACGCCGAGCGGGTCGGCTGGGCCGGTG ACGCGCTGGCCGCGGTCCGCGAGGGCGAGCTGGCGCGCCGCGAGCTGGAGACGGCCGCGAACACCCTGGAGCAGGCCGCG GTGAGGGTCGCGGCGGCCGAGCGCCTGGACCAGCCGGCGCCGGAGGTGGCCGAGCTCGTCCTGTGCCTGCGCGCCGCGGC CGACCAGGCCTACGCCGACTGGCACGTGAAGATGGCCGCCGCGCGACGGGCCCGGCGGCTCGCGGTGCTGCGCGAAGAGC TCACGTCGCGACTCGCCGAGGGCGCGCCCGGTCTGCCTGCCCTGCTCGAGGCCGACGCCACGGAGGCGAGCTGGGCGCCG CGGATCGCGAGGTGGGACGCCGCGTGGGCGGCGGCCCGCGAGCTCTCGGAGGCGATGGCCGGCCCCGCGGTCCGGGTCGT CGCGATGCCCGAGCTGATCGCGCAGAGCGCCGCCGGCGGGCGGCTCGACGTGCTGGTCGTCCACGACCCGACCGCGGAGC ACGCCGAGGACCAGCGGCTGCTCGACCTGGCGCCGAGGACCGTGGTCGTCACGAGGCCGGCGGGTCCCCGCGAGGTGGTC CTGGAGCTGGCGTCGACCGGCCCGGTCAGCGGCGCGGAGGTGCGGGCCGCCACCGGACTGAGCCCGGCGCGGTCGCGCAC CCTCCTCCAGCAGCTCGTCGACGCCGGCGAGCTGGTCCGCACGGGAGCCACCAGCGCCACCCGGTGGCACCGGGCCGATC CCGTCGGCGACCACCGGTAG
Upstream 100 bases:
>100_bases GGGGGACCCGTACCCGGCGACGCCGGGCGGGTCACGGGGCCCACCGAGCCCACGCCCTAGCATCGACGCTGTGTGTCCCG CCGGACGCGGAGAGATCTCG
Downstream 100 bases:
>100_bases CGGCCACGACCGGGAGGTGAGCCGCGCCACGACCGGGTCACGTCACGGGCGGCGCCGCGGCACGTCCCTGCGTCGGAGCC GCCGATCCGGGTGCCGCCGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 619; Mature: 619
Protein sequence:
>619_residues MEGCDVGAGEEPERRLDRVVLGSGEAPEDRLAATAAGLAVGGLRITVTGTDDTVLEKTRDRLGVVLTPRDPAAQVADPAL RWLPLPVRGDLPLTTEELQRLVRLFARTTPEHERRRRQAFPPVEAVPTDEEVRVLADRVTRGDLAARQLDPSLREVLERA DASEVLATIREVKARLGEVLRHRRAWVVRVVDVALGDPGAETWQRLSAHADGIEHLLRSLAELGDAVVEGVEPSEEAAQA FGALQDELAAGQPARRWFRGRTQRTAARLLESARVDGEPVTDVAGASTVRRFLEVAAESADLGQQLGSLGVPVPPDTPRD GMVAGYAEVLEALRAISRLVDVSRRLVQVLGPGPVEELPVASLEDAERVGWAGDALAAVREGELARRELETAANTLEQAA VRVAAAERLDQPAPEVAELVLCLRAAADQAYADWHVKMAAARRARRLAVLREELTSRLAEGAPGLPALLEADATEASWAP RIARWDAAWAAARELSEAMAGPAVRVVAMPELIAQSAAGGRLDVLVVHDPTAEHAEDQRLLDLAPRTVVVTRPAGPREVV LELASTGPVSGAEVRAATGLSPARSRTLLQQLVDAGELVRTGATSATRWHRADPVGDHR
Sequences:
>Translated_619_residues MEGCDVGAGEEPERRLDRVVLGSGEAPEDRLAATAAGLAVGGLRITVTGTDDTVLEKTRDRLGVVLTPRDPAAQVADPAL RWLPLPVRGDLPLTTEELQRLVRLFARTTPEHERRRRQAFPPVEAVPTDEEVRVLADRVTRGDLAARQLDPSLREVLERA DASEVLATIREVKARLGEVLRHRRAWVVRVVDVALGDPGAETWQRLSAHADGIEHLLRSLAELGDAVVEGVEPSEEAAQA FGALQDELAAGQPARRWFRGRTQRTAARLLESARVDGEPVTDVAGASTVRRFLEVAAESADLGQQLGSLGVPVPPDTPRD GMVAGYAEVLEALRAISRLVDVSRRLVQVLGPGPVEELPVASLEDAERVGWAGDALAAVREGELARRELETAANTLEQAA VRVAAAERLDQPAPEVAELVLCLRAAADQAYADWHVKMAAARRARRLAVLREELTSRLAEGAPGLPALLEADATEASWAP RIARWDAAWAAARELSEAMAGPAVRVVAMPELIAQSAAGGRLDVLVVHDPTAEHAEDQRLLDLAPRTVVVTRPAGPREVV LELASTGPVSGAEVRAATGLSPARSRTLLQQLVDAGELVRTGATSATRWHRADPVGDHR >Mature_619_residues MEGCDVGAGEEPERRLDRVVLGSGEAPEDRLAATAAGLAVGGLRITVTGTDDTVLEKTRDRLGVVLTPRDPAAQVADPAL RWLPLPVRGDLPLTTEELQRLVRLFARTTPEHERRRRQAFPPVEAVPTDEEVRVLADRVTRGDLAARQLDPSLREVLERA DASEVLATIREVKARLGEVLRHRRAWVVRVVDVALGDPGAETWQRLSAHADGIEHLLRSLAELGDAVVEGVEPSEEAAQA FGALQDELAAGQPARRWFRGRTQRTAARLLESARVDGEPVTDVAGASTVRRFLEVAAESADLGQQLGSLGVPVPPDTPRD GMVAGYAEVLEALRAISRLVDVSRRLVQVLGPGPVEELPVASLEDAERVGWAGDALAAVREGELARRELETAANTLEQAA VRVAAAERLDQPAPEVAELVLCLRAAADQAYADWHVKMAAARRARRLAVLREELTSRLAEGAPGLPALLEADATEASWAP RIARWDAAWAAARELSEAMAGPAVRVVAMPELIAQSAAGGRLDVLVVHDPTAEHAEDQRLLDLAPRTVVVTRPAGPREVV LELASTGPVSGAEVRAATGLSPARSRTLLQQLVDAGELVRTGATSATRWHRADPVGDHR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 66376; Mature: 66376
Theoretical pI: Translated: 4.88; Mature: 4.88
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 1.1 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEGCDVGAGEEPERRLDRVVLGSGEAPEDRLAATAAGLAVGGLRITVTGTDDTVLEKTRD CCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHEECCEEEEEECCCHHHHHHHHH RLGVVLTPRDPAAQVADPALRWLPLPVRGDLPLTTEELQRLVRLFARTTPEHERRRRQAF HCCEEECCCCCHHHHHCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHCC PPVEAVPTDEEVRVLADRVTRGDLAARQLDPSLREVLERADASEVLATIREVKARLGEVL CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH RHRRAWVVRVVDVALGDPGAETWQRLSAHADGIEHLLRSLAELGDAVVEGVEPSEEAAQA HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH FGALQDELAAGQPARRWFRGRTQRTAARLLESARVDGEPVTDVAGASTVRRFLEVAAESA HHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHCCCCCCCHHHCCHHHHHHHHHHHHHHH DLGQQLGSLGVPVPPDTPRDGMVAGYAEVLEALRAISRLVDVSRRLVQVLGPGPVEELPV HHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCC ASLEDAERVGWAGDALAAVREGELARRELETAANTLEQAAVRVAAAERLDQPAPEVAELV CCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH LCLRAAADQAYADWHVKMAAARRARRLAVLREELTSRLAEGAPGLPALLEADATEASWAP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCC RIARWDAAWAAARELSEAMAGPAVRVVAMPELIAQSAAGGRLDVLVVHDPTAEHAEDQRL HHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHH LDLAPRTVVVTRPAGPREVVLELASTGPVSGAEVRAATGLSPARSRTLLQQLVDAGELVR HHCCCCEEEEECCCCHHHHHHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHH TGATSATRWHRADPVGDHR CCCCCHHCCCCCCCCCCCC >Mature Secondary Structure MEGCDVGAGEEPERRLDRVVLGSGEAPEDRLAATAAGLAVGGLRITVTGTDDTVLEKTRD CCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHEECCEEEEEECCCHHHHHHHHH RLGVVLTPRDPAAQVADPALRWLPLPVRGDLPLTTEELQRLVRLFARTTPEHERRRRQAF HCCEEECCCCCHHHHHCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHCC PPVEAVPTDEEVRVLADRVTRGDLAARQLDPSLREVLERADASEVLATIREVKARLGEVL CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH RHRRAWVVRVVDVALGDPGAETWQRLSAHADGIEHLLRSLAELGDAVVEGVEPSEEAAQA HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH FGALQDELAAGQPARRWFRGRTQRTAARLLESARVDGEPVTDVAGASTVRRFLEVAAESA HHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHCCCCCCCHHHCCHHHHHHHHHHHHHHH DLGQQLGSLGVPVPPDTPRDGMVAGYAEVLEALRAISRLVDVSRRLVQVLGPGPVEELPV HHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCC ASLEDAERVGWAGDALAAVREGELARRELETAANTLEQAAVRVAAAERLDQPAPEVAELV CCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH LCLRAAADQAYADWHVKMAAARRARRLAVLREELTSRLAEGAPGLPALLEADATEASWAP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCC RIARWDAAWAAARELSEAMAGPAVRVVAMPELIAQSAAGGRLDVLVVHDPTAEHAEDQRL HHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHH LDLAPRTVVVTRPAGPREVVLELASTGPVSGAEVRAATGLSPARSRTLLQQLVDAGELVR HHCCCCEEEEECCCCHHHHHHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHH TGATSATRWHRADPVGDHR CCCCCHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA