| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
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The map label for this gene is 119717946
Identifier: 119717946
GI number: 119717946
Start: 3950379
End: 3951047
Strand: Reverse
Name: 119717946
Synonym: Noca_3724
Alternate gene names: NA
Gene position: 3951047-3950379 (Counterclockwise)
Preceding gene: 119717947
Following gene: 119717945
Centisome position: 79.24
GC content: 76.53
Gene sequence:
>669_bases ATGTCCGCTCTCGACGCCCCCGCGCACGCCCTCGCCTCCGCCGGAGGCCTGCTGTTCGCCGGGACGACCCGCGCCGTGGC CGCCGTCCGGCCGGCCGCCAAGCCGCTGCACCCACGCGGAGAGGTGACCCGCGGTCGGCTGTTCCGTCGCGGTGCGCAGC CGGCCACGGGCGTGCCGTGGCTCGACGAGACCGGCGAGGACGACGTGCTGGTGCGCCGCTCCCGGGCGATCGGCCTGCCC GGTTCGGCGCCCGACATCCATGGCCTGGCGATCCGCGTGCCCCGCCCCGGCGGCGGGCACGGCGACCTCCTGCTCGCCTC GACCGGATGGGGCCGGCTGACCCGCTTCGTGCTGACCATGAGCCGCTCCCCGCGGCAGCGGCCGATGACCACGCTGCTGC CCTACCGGACCGACCGGGGGCCGCTGCTGCTCGGTGCCCGGCCAACCGGCGCCGAGTCCTTCGAGCTGGCCGCGGCCGCG CCGGAGGGGGAGTGGGCGCGCTTCGCCGAGCTGCGGCTGTCCGCGTTGCCCCTGGACGACGACGCGGACGACCCGGCCGT CTCGTTCGACCCAGTGGTCAACCGGCTCCCCGGACTCGAGCAGTACGGCGCGGTCGAGCGGCTGCGCGAGCCGTCGTACC GATCCGCTCGTGGCTCTCGCACCGAATGA
Upstream 100 bases:
>100_bases TCACGGCCGGCGGGTCGTACAAGCTCGCCAACGCGGTCGCGTTCACGGTCGTGGTGCCCTGAGCGGCGTGCCGCCCGTCC CGCATGGGTACGGCGGGGTC
Downstream 100 bases:
>100_bases CGGCGTGACGCGCGCCCGGCTGATCGACACGCATACGCCGGACCACCCTGGGGGAGTGGTCCTGGTGCTGCACGGCGGCG CGAGCCGTCCGGGCCGCTCG
Product: putative phosphodiesterase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 222; Mature: 221
Protein sequence:
>222_residues MSALDAPAHALASAGGLLFAGTTRAVAAVRPAAKPLHPRGEVTRGRLFRRGAQPATGVPWLDETGEDDVLVRRSRAIGLP GSAPDIHGLAIRVPRPGGGHGDLLLASTGWGRLTRFVLTMSRSPRQRPMTTLLPYRTDRGPLLLGARPTGAESFELAAAA PEGEWARFAELRLSALPLDDDADDPAVSFDPVVNRLPGLEQYGAVERLREPSYRSARGSRTE
Sequences:
>Translated_222_residues MSALDAPAHALASAGGLLFAGTTRAVAAVRPAAKPLHPRGEVTRGRLFRRGAQPATGVPWLDETGEDDVLVRRSRAIGLP GSAPDIHGLAIRVPRPGGGHGDLLLASTGWGRLTRFVLTMSRSPRQRPMTTLLPYRTDRGPLLLGARPTGAESFELAAAA PEGEWARFAELRLSALPLDDDADDPAVSFDPVVNRLPGLEQYGAVERLREPSYRSARGSRTE >Mature_221_residues SALDAPAHALASAGGLLFAGTTRAVAAVRPAAKPLHPRGEVTRGRLFRRGAQPATGVPWLDETGEDDVLVRRSRAIGLPG SAPDIHGLAIRVPRPGGGHGDLLLASTGWGRLTRFVLTMSRSPRQRPMTTLLPYRTDRGPLLLGARPTGAESFELAAAAP EGEWARFAELRLSALPLDDDADDPAVSFDPVVNRLPGLEQYGAVERLREPSYRSARGSRTE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23693; Mature: 23562
Theoretical pI: Translated: 10.60; Mature: 10.60
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSALDAPAHALASAGGLLFAGTTRAVAAVRPAAKPLHPRGEVTRGRLFRRGAQPATGVPW CCCCCCHHHHHHHCCCEEEECCHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCC LDETGEDDVLVRRSRAIGLPGSAPDIHGLAIRVPRPGGGHGDLLLASTGWGRLTRFVLTM CCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEECCHHHHHHHHHHH SRSPRQRPMTTLLPYRTDRGPLLLGARPTGAESFELAAAAPEGEWARFAELRLSALPLDD CCCCCCCCCEEECCEECCCCCEEEECCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCCC DADDPAVSFDPVVNRLPGLEQYGAVERLREPSYRSARGSRTE CCCCCCCCCCHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCC >Mature Secondary Structure SALDAPAHALASAGGLLFAGTTRAVAAVRPAAKPLHPRGEVTRGRLFRRGAQPATGVPW CCCCCHHHHHHHCCCEEEECCHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCC LDETGEDDVLVRRSRAIGLPGSAPDIHGLAIRVPRPGGGHGDLLLASTGWGRLTRFVLTM CCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEECCHHHHHHHHHHH SRSPRQRPMTTLLPYRTDRGPLLLGARPTGAESFELAAAAPEGEWARFAELRLSALPLDD CCCCCCCCCEEECCEECCCCCEEEECCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCCC DADDPAVSFDPVVNRLPGLEQYGAVERLREPSYRSARGSRTE CCCCCCCCCCHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA