Click here to switch to the map view.

The map label for this gene is tcsA [H]

Identifier: 119717763

GI number: 119717763

Start: 3752333

End: 3753397

Strand: Reverse

Name: tcsA [H]

Synonym: Noca_3541

Alternate gene names: 119717763

Gene position: 3753397-3752333 (Counterclockwise)

Preceding gene: 119717764

Following gene: 119717762

Centisome position: 75.28

GC content: 67.98

Gene sequence:

>1065_bases
TTGCGACGCACCACGAAGTTCGCAGCCCTGCTGACGGCCGGCATCCTGGCCCTCGGCGCATGCGGCAGCAGCGACAGTGA
CGGCGAGAGCACCACCGGGTCCGACACCCCGAGCTCCTCGGCCCCCCAGTCCGACGTCAAGGTCGGCATGGCCTACGACG
TCGGCGGACGCGGCGACCAGTCCTTCAACGACTCGGCGGCCGCCGGTCTCGACCAGGCGGTCGAGGAGTTCGGCATGACC
GCCAACGAGTCCGAGGCCGAGGACGGCGAGGCCGAGAACGCCCGCGAGGAGCGGCTGCGCACCTTCGCCGACGCCGGCTT
CGACCCGATCATCGCGGTGGGCTTCGCCTACGCCGCATCGGTCGGCAAGGTCGCGGCGGAGTACCCGGACGTGCACTTCG
CGATCATCGACGACTCCAGCCTCGCGGACGTCCCGAACGTCGCCAGCCTGGTCTTCGCCGAGGAGCAGGGCTCGTTCCTG
GTCGGCGCGGCTGCCGCGCTGAAGACCAAGACCGACCACGTCGGCTTCATCGGCGGCGTCGAGACCCCGCTGATCCAGAA
GTTCCAGGCCGGCTACGAGGCCGGCGTCGCGGCCGTCAACCCGAACATCAAGGTCGACGTCACCTACCTGACCCAGGTTC
CGGACTTCTCCGGCTTCGGTGACCCGGCCAAGGGCAAGACCGCTGCGCAGGGCATGTACGACGCCGGCGCCGACATCGTC
TACCACGCCGCCGGTGGCTCCGGTGGTGGCGTCTTCGAGGCGGCCGCCGAGTCCGGCAACCTCGCGATCGGTGTCGACTC
CGACCAGTACAACACCGCCGACCCGTCCGTCCAGGACGTCATCATGACCTCGATGCTCAAGAACGTGAACGTTGCGGTCT
ACGAGTACCTCAAGCAGGTCAACGACGGGAGCTTCCCGACCGGCGTCACCACCTACGACCTGTCGGTCGACGGTGTGGGC
TACTCCACCAGCGGCGGGATGATCGACGACATCACCGGTCAGCTCGACGACTACAAGCAGCAGATCATCGACGGCAAGAT
CACGGTCCCGACCGAGCCCAAGTGA

Upstream 100 bases:

>100_bases
TAACAACTTCGTGATGTGGCTGTGACGGCCGGACGCAGGCCCTAGTGTGGCCGGTGTTTCGCGCCCGGTAGGGCGTCCAC
AGAACACGAAGGAGGGCGTC

Downstream 100 bases:

>100_bases
TCCACCGCTGAACGAAGCAACACCTGTGACGGGCCCGCGGGGCACTCTGCCCCGCGGGCCTGTCGCGCCCCCGACGCCGC
CGAACCGGTAGCGTCATCGG

Product: basic membrane lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 354; Mature: 354

Protein sequence:

>354_residues
MRRTTKFAALLTAGILALGACGSSDSDGESTTGSDTPSSSAPQSDVKVGMAYDVGGRGDQSFNDSAAAGLDQAVEEFGMT
ANESEAEDGEAENAREERLRTFADAGFDPIIAVGFAYAASVGKVAAEYPDVHFAIIDDSSLADVPNVASLVFAEEQGSFL
VGAAAALKTKTDHVGFIGGVETPLIQKFQAGYEAGVAAVNPNIKVDVTYLTQVPDFSGFGDPAKGKTAAQGMYDAGADIV
YHAAGGSGGGVFEAAAESGNLAIGVDSDQYNTADPSVQDVIMTSMLKNVNVAVYEYLKQVNDGSFPTGVTTYDLSVDGVG
YSTSGGMIDDITGQLDDYKQQIIDGKITVPTEPK

Sequences:

>Translated_354_residues
MRRTTKFAALLTAGILALGACGSSDSDGESTTGSDTPSSSAPQSDVKVGMAYDVGGRGDQSFNDSAAAGLDQAVEEFGMT
ANESEAEDGEAENAREERLRTFADAGFDPIIAVGFAYAASVGKVAAEYPDVHFAIIDDSSLADVPNVASLVFAEEQGSFL
VGAAAALKTKTDHVGFIGGVETPLIQKFQAGYEAGVAAVNPNIKVDVTYLTQVPDFSGFGDPAKGKTAAQGMYDAGADIV
YHAAGGSGGGVFEAAAESGNLAIGVDSDQYNTADPSVQDVIMTSMLKNVNVAVYEYLKQVNDGSFPTGVTTYDLSVDGVG
YSTSGGMIDDITGQLDDYKQQIIDGKITVPTEPK
>Mature_354_residues
MRRTTKFAALLTAGILALGACGSSDSDGESTTGSDTPSSSAPQSDVKVGMAYDVGGRGDQSFNDSAAAGLDQAVEEFGMT
ANESEAEDGEAENAREERLRTFADAGFDPIIAVGFAYAASVGKVAAEYPDVHFAIIDDSSLADVPNVASLVFAEEQGSFL
VGAAAALKTKTDHVGFIGGVETPLIQKFQAGYEAGVAAVNPNIKVDVTYLTQVPDFSGFGDPAKGKTAAQGMYDAGADIV
YHAAGGSGGGVFEAAAESGNLAIGVDSDQYNTADPSVQDVIMTSMLKNVNVAVYEYLKQVNDGSFPTGVTTYDLSVDGVG
YSTSGGMIDDITGQLDDYKQQIIDGKITVPTEPK

Specific function: Unknown

COG id: COG1744

COG function: function code R; Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the BMP lipoprotein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003760 [H]

Pfam domain/function: PF02608 Bmp [H]

EC number: NA

Molecular weight: Translated: 36465; Mature: 36465

Theoretical pI: Translated: 3.88; Mature: 3.88

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRTTKFAALLTAGILALGACGSSDSDGESTTGSDTPSSSAPQSDVKVGMAYDVGGRGDQ
CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCC
SFNDSAAAGLDQAVEEFGMTANESEAEDGEAENAREERLRTFADAGFDPIIAVGFAYAAS
CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
VGKVAAEYPDVHFAIIDDSSLADVPNVASLVFAEEQGSFLVGAAAALKTKTDHVGFIGGV
HHHHHHCCCCEEEEEECCCCCCCCCCHHHEEEECCCCCEEEEEHHHHHCCCCCCEEECCC
ETPLIQKFQAGYEAGVAAVNPNIKVDVTYLTQVPDFSGFGDPAKGKTAAQGMYDAGADIV
CHHHHHHHHHHHHCCEEEECCCCEEEEEEEEECCCCCCCCCCCCCCHHHCCCCCCCCCEE
YHAAGGSGGGVFEAAAESGNLAIGVDSDQYNTADPSVQDVIMTSMLKNVNVAVYEYLKQV
EECCCCCCCCEEEECCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHH
NDGSFPTGVTTYDLSVDGVGYSTSGGMIDDITGQLDDYKQQIIDGKITVPTEPK
CCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHCHHHHHHHHHHCCEEECCCCCC
>Mature Secondary Structure
MRRTTKFAALLTAGILALGACGSSDSDGESTTGSDTPSSSAPQSDVKVGMAYDVGGRGDQ
CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCC
SFNDSAAAGLDQAVEEFGMTANESEAEDGEAENAREERLRTFADAGFDPIIAVGFAYAAS
CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
VGKVAAEYPDVHFAIIDDSSLADVPNVASLVFAEEQGSFLVGAAAALKTKTDHVGFIGGV
HHHHHHCCCCEEEEEECCCCCCCCCCHHHEEEECCCCCEEEEEHHHHHCCCCCCEEECCC
ETPLIQKFQAGYEAGVAAVNPNIKVDVTYLTQVPDFSGFGDPAKGKTAAQGMYDAGADIV
CHHHHHHHHHHHHCCEEEECCCCEEEEEEEEECCCCCCCCCCCCCCHHHCCCCCCCCCEE
YHAAGGSGGGVFEAAAESGNLAIGVDSDQYNTADPSVQDVIMTSMLKNVNVAVYEYLKQV
EECCCCCCCCEEEECCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHH
NDGSFPTGVTTYDLSVDGVGYSTSGGMIDDITGQLDDYKQQIIDGKITVPTEPK
CCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHCHHHHHHHHHHCCEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11679669 [H]