Click here to switch to the map view.

The map label for this gene is ycdM [C]

Identifier: 119717598

GI number: 119717598

Start: 3575057

End: 3575983

Strand: Reverse

Name: ycdM [C]

Synonym: Noca_3375

Alternate gene names: 119717598

Gene position: 3575983-3575057 (Counterclockwise)

Preceding gene: 119717599

Following gene: 119717597

Centisome position: 71.72

GC content: 72.49

Gene sequence:

>927_bases
ATGAACAGCAGCACGAGCACCGACTACGGCCACGACCTGATCTTCGGCACCTTCGTGACCCCGACCAACCACCCCGTCCA
CCACGCCGTCGAGCAGGCCGTCGTCGCCGACCGCGCCGGGCTGGACCTGGTCACCTTCCAGGACCACCCGTACGTGGCGA
AGTTCCACGACACCTCGACCCTGCTCGCCTACGCCGCCGCCCGCACCGAGCGGATCCACCTCTCGGCGAACGTCACCAAC
CTCCCGCTGCGGCCCCCAGCCGTCCTCGCCCGCGCCATCGCCACGCTCGACCTGCTCAGCGGCGGCCGGATCGAGCTGGG
CATCGGTGCCGGGGCCTTCTGGGACGGCGTCGTCGGCATGGGCGGCCCCCGGCGTACGCCAGGGGAGTCCATCGAGGCGC
TCGAGGAGGCGATCGCGATCATCCGCGCCGTCTGGAACACCAGCGACCCCGGCGTCCTGTCCGTGCGCGGCCGGCACTAC
GACGTCCACGGCGCCAAGCGCGGCCCGGCCCCCGCGCACCCGGTCGGCATCTGGGTCGGCGCCTACAAACCCCGCATCCT
GCGCCTGGTGGGGCGTGCCGCGGATGGCTGGCTCCCGTCGATCCAGTACCTCCAGAACGGCCTACCGGAGCTGACCGAGA
TGAACCGACACATCGACGAGGCCGCGCTCACCTCCGGCCGCGAGCCGAGCGACGTACGCCGCTTCCTCAACATCGGCGGA
CAGTTCGCGGCCCAGCGCCGCGGCTTCCTCCAGGGCCCGCCCAGCCAGTGGGCCGAGGAGCTCACCGACGTGGCGCTCAC
GTACGGCACCAGCGGCTTCATCCTCGCCTCCGACGACACCGCGCTGACCCAGGCCTTCGCCGCCGAGGTCGCCCCGGCCG
TCAAGGAGCTCGTGGCCGACGCGCGCGGCACCGGCCGCCATGAGTGA

Upstream 100 bases:

>100_bases
CCCTGGACCGGTTGCGCCGGCTCAAGGCGGAGGTCGACCCGCACAACCTGTTCCAGGACAACTTCAACATCGCCCCCACC
CACGACACCAGGACCGCCTC

Downstream 100 bases:

>100_bases
CTGGCTGACCGAGGACGAGCAGCACACCTGGCGCAGCGTCCTGCGGATGCACACCCAGCTGACCGCCGCCCTGGCCCAGG
CCCTCAAGGCCGACTCCGAG

Product: luciferase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 308; Mature: 308

Protein sequence:

>308_residues
MNSSTSTDYGHDLIFGTFVTPTNHPVHHAVEQAVVADRAGLDLVTFQDHPYVAKFHDTSTLLAYAAARTERIHLSANVTN
LPLRPPAVLARAIATLDLLSGGRIELGIGAGAFWDGVVGMGGPRRTPGESIEALEEAIAIIRAVWNTSDPGVLSVRGRHY
DVHGAKRGPAPAHPVGIWVGAYKPRILRLVGRAADGWLPSIQYLQNGLPELTEMNRHIDEAALTSGREPSDVRRFLNIGG
QFAAQRRGFLQGPPSQWAEELTDVALTYGTSGFILASDDTALTQAFAAEVAPAVKELVADARGTGRHE

Sequences:

>Translated_308_residues
MNSSTSTDYGHDLIFGTFVTPTNHPVHHAVEQAVVADRAGLDLVTFQDHPYVAKFHDTSTLLAYAAARTERIHLSANVTN
LPLRPPAVLARAIATLDLLSGGRIELGIGAGAFWDGVVGMGGPRRTPGESIEALEEAIAIIRAVWNTSDPGVLSVRGRHY
DVHGAKRGPAPAHPVGIWVGAYKPRILRLVGRAADGWLPSIQYLQNGLPELTEMNRHIDEAALTSGREPSDVRRFLNIGG
QFAAQRRGFLQGPPSQWAEELTDVALTYGTSGFILASDDTALTQAFAAEVAPAVKELVADARGTGRHE
>Mature_308_residues
MNSSTSTDYGHDLIFGTFVTPTNHPVHHAVEQAVVADRAGLDLVTFQDHPYVAKFHDTSTLLAYAAARTERIHLSANVTN
LPLRPPAVLARAIATLDLLSGGRIELGIGAGAFWDGVVGMGGPRRTPGESIEALEEAIAIIRAVWNTSDPGVLSVRGRHY
DVHGAKRGPAPAHPVGIWVGAYKPRILRLVGRAADGWLPSIQYLQNGLPELTEMNRHIDEAALTSGREPSDVRRFLNIGG
QFAAQRRGFLQGPPSQWAEELTDVALTYGTSGFILASDDTALTQAFAAEVAPAVKELVADARGTGRHE

Specific function: Catalyzes the reduction of the keto moiety of phthiodiolone dimycocerosates (DIM B) and glycosylated phenolphthiodiolone dimycocerosates to form the intermediate compounds phthiotriol and glycosylated phenolphthiotriol dimycocerosates during phthiocerol d

COG id: COG2141

COG function: function code C; Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mer family. Phthiodiolone/phenolphthiodiolone dimycocerosates ketoreductase subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011251
- InterPro:   IPR016048 [H]

Pfam domain/function: PF00296 Bac_luciferase [H]

EC number: NA

Molecular weight: Translated: 33013; Mature: 33013

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSSTSTDYGHDLIFGTFVTPTNHPVHHAVEQAVVADRAGLDLVTFQDHPYVAKFHDTST
CCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCEEEEECCHHH
LLAYAAARTERIHLSANVTNLPLRPPAVLARAIATLDLLSGGRIELGIGAGAFWDGVVGM
HHHHHHHHCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCHHCC
GGPRRTPGESIEALEEAIAIIRAVWNTSDPGVLSVRGRHYDVHGAKRGPAPAHPVGIWVG
CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCEEECCCCCCCCCCCCCCEEEEC
AYKPRILRLVGRAADGWLPSIQYLQNGLPELTEMNRHIDEAALTSGREPSDVRRFLNIGG
CCCHHHHHHHHHCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCC
QFAAQRRGFLQGPPSQWAEELTDVALTYGTSGFILASDDTALTQAFAAEVAPAVKELVAD
HHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHH
ARGTGRHE
CCCCCCCC
>Mature Secondary Structure
MNSSTSTDYGHDLIFGTFVTPTNHPVHHAVEQAVVADRAGLDLVTFQDHPYVAKFHDTST
CCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCEEEEECCHHH
LLAYAAARTERIHLSANVTNLPLRPPAVLARAIATLDLLSGGRIELGIGAGAFWDGVVGM
HHHHHHHHCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCHHCC
GGPRRTPGESIEALEEAIAIIRAVWNTSDPGVLSVRGRHYDVHGAKRGPAPAHPVGIWVG
CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCEEECCCCCCCCCCCCCCEEEEC
AYKPRILRLVGRAADGWLPSIQYLQNGLPELTEMNRHIDEAALTSGREPSDVRRFLNIGG
CCCHHHHHHHHHCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCC
QFAAQRRGFLQGPPSQWAEELTDVALTYGTSGFILASDDTALTQAFAAEVAPAVKELVAD
HHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHH
ARGTGRHE
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]