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The map label for this gene is lsrB [H]

Identifier: 119717544

GI number: 119717544

Start: 3528281

End: 3529327

Strand: Reverse

Name: lsrB [H]

Synonym: Noca_3320

Alternate gene names: 119717544

Gene position: 3529327-3528281 (Counterclockwise)

Preceding gene: 119717546

Following gene: 119717543

Centisome position: 70.79

GC content: 66.0

Gene sequence:

>1047_bases
ATGAGGCACAGCAGACTTGCCCGTGGAGCCATCGTCGGCGCGCTCGCGTTGGCGCTCGCGGCGTGCAGTTCGGTCGATGA
CAGTGGATCCGACGACAACCCCGGGGCGGCCGGTTCCAGCGCGTCCGGAGGCGACGGTGCCTACGTCGTCGTCGTGAAGG
CGACCGGCATCGGCTGGTTCGACCGCATGGAGGTGGGCGTCAAGGAGTGGGCCTCCGAGACCGGGCTCGACGCACGTGAA
GAGGGCCCGTCCGAGGCCACGAACGAGGGCCAGGTCGCGATCATCCAGGACCTCATCGCACAGAAGCCCACCGCCATCTC
GGTCGTGCCGAACGACCTTGCCGGCCTGGAGAGCGTTCTGGGCCAGGCCCGCGATGCGGGAATCATCGTCGTCAGCCACG
AGGCCGTCGGCATCAAGAACGTCGACATCGACATCGAGGGCTTCGAGAACACGGCCTACGGCGCGCAGATCATGGAGAAC
CTCGGCGAGTGCACGGGCGGCGAAGGCGAATACGTCCAGTTCGTCGGGCGGCTGACCAACGGATCTCACTCGGAGTGGGT
CAAGGGCGCCTATGAGAAGCAGCAGGCGGACTTCCCCGGCATGACGCGGGTAGAGGACCCGATCGAGTCGGAGGAGAACG
AGGAGGTTGCCTACAACAAGGCGAAGGAGCTCCTCTCGAAGTACCCGGACATCAAGGGCTTCCAGGGCTCGGCCGGCACC
GACGTCGTGGGCATCGCTCGTGCCGTCGAGGAGGCAGGGAAGACCGACAGCGTCTGCGTGATGGGCACCAGCATCCCGTC
CGTCGCGGGTGGCTACCTCGAGAGTGGAGCCATCGACAAGATCTTCTTCTGGGACCCGGCTATGGCGGGCAAGGCACAGC
TGGCCGTCGCGAAGATCCTCGCTGAGGGCGGAACGATCGAGGAAGGTACCGACCTGGGGGTCCCCGGGTACGAGTCGCTC
GTGAAGCTCGACGGTGCTGACAACGCGTTCGCCGGCAACGCAGGGGTCGCGGTCGACGTCGAGAACATGGACGAGTACGA
CTTCTAG

Upstream 100 bases:

>100_bases
ATTCTGTTGACAGAGTGCGCGGGTCTCCCTACCGTGATGCGCGGCTGCCGTCGCGCTGCCGCAACGGCGCATCGTGCTCA
TTCAAAAGGGGAGTAACCGC

Downstream 100 bases:

>100_bases
TACACCGATCTCCGTGCCGGGTGGGCCTGACCTGCAGGCCCACCCGGTCACGTCGGAGCATCGAAGGGAGGCGGCAGGAT
GACCACACCCGTGGCACCCG

Product: ABC sugar transporter, periplasmic ligand binding protein

Products: NA

Alternate protein names: AI-2-binding protein lsrB [H]

Number of amino acids: Translated: 348; Mature: 348

Protein sequence:

>348_residues
MRHSRLARGAIVGALALALAACSSVDDSGSDDNPGAAGSSASGGDGAYVVVVKATGIGWFDRMEVGVKEWASETGLDARE
EGPSEATNEGQVAIIQDLIAQKPTAISVVPNDLAGLESVLGQARDAGIIVVSHEAVGIKNVDIDIEGFENTAYGAQIMEN
LGECTGGEGEYVQFVGRLTNGSHSEWVKGAYEKQQADFPGMTRVEDPIESEENEEVAYNKAKELLSKYPDIKGFQGSAGT
DVVGIARAVEEAGKTDSVCVMGTSIPSVAGGYLESGAIDKIFFWDPAMAGKAQLAVAKILAEGGTIEEGTDLGVPGYESL
VKLDGADNAFAGNAGVAVDVENMDEYDF

Sequences:

>Translated_348_residues
MRHSRLARGAIVGALALALAACSSVDDSGSDDNPGAAGSSASGGDGAYVVVVKATGIGWFDRMEVGVKEWASETGLDARE
EGPSEATNEGQVAIIQDLIAQKPTAISVVPNDLAGLESVLGQARDAGIIVVSHEAVGIKNVDIDIEGFENTAYGAQIMEN
LGECTGGEGEYVQFVGRLTNGSHSEWVKGAYEKQQADFPGMTRVEDPIESEENEEVAYNKAKELLSKYPDIKGFQGSAGT
DVVGIARAVEEAGKTDSVCVMGTSIPSVAGGYLESGAIDKIFFWDPAMAGKAQLAVAKILAEGGTIEEGTDLGVPGYESL
VKLDGADNAFAGNAGVAVDVENMDEYDF
>Mature_348_residues
MRHSRLARGAIVGALALALAACSSVDDSGSDDNPGAAGSSASGGDGAYVVVVKATGIGWFDRMEVGVKEWASETGLDARE
EGPSEATNEGQVAIIQDLIAQKPTAISVVPNDLAGLESVLGQARDAGIIVVSHEAVGIKNVDIDIEGFENTAYGAQIMEN
LGECTGGEGEYVQFVGRLTNGSHSEWVKGAYEKQQADFPGMTRVEDPIESEENEEVAYNKAKELLSKYPDIKGFQGSAGT
DVVGIARAVEEAGKTDSVCVMGTSIPSVAGGYLESGAIDKIFFWDPAMAGKAQLAVAKILAEGGTIEEGTDLGVPGYESL
VKLDGADNAFAGNAGVAVDVENMDEYDF

Specific function: Part of the ABC transporter complex lsrABCD involved in autoinducer 2 (AI-2) import. Binds AI-2 and delivers it to the lsrC and lsrD permeases [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1787795, Length=316, Percent_Identity=25.3164556962025, Blast_Score=68, Evalue=8e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 36108; Mature: 36108

Theoretical pI: Translated: 3.96; Mature: 3.96

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRHSRLARGAIVGALALALAACSSVDDSGSDDNPGAAGSSASGGDGAYVVVVKATGIGWF
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCH
DRMEVGVKEWASETGLDAREEGPSEATNEGQVAIIQDLIAQKPTAISVVPNDLAGLESVL
HHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCHHHHHHHHH
GQARDAGIIVVSHEAVGIKNVDIDIEGFENTAYGAQIMENLGECTGGEGEYVQFVGRLTN
HCCCCCCEEEEECCCCCEEEEEEEEECCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHCC
GSHSEWVKGAYEKQQADFPGMTRVEDPIESEENEEVAYNKAKELLSKYPDIKGFQGSAGT
CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC
DVVGIARAVEEAGKTDSVCVMGTSIPSVAGGYLESGAIDKIFFWDPAMAGKAQLAVAKIL
HHHHHHHHHHHHCCCCCEEEEECCCCHHHCCHHCCCCCCEEEEECCCCCCHHHHHHHHHH
AEGGTIEEGTDLGVPGYESLVKLDGADNAFAGNAGVAVDVENMDEYDF
HCCCCCCCCCCCCCCCHHHHEEECCCCCCCCCCCCCEEEECCCCCCCC
>Mature Secondary Structure
MRHSRLARGAIVGALALALAACSSVDDSGSDDNPGAAGSSASGGDGAYVVVVKATGIGWF
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCH
DRMEVGVKEWASETGLDAREEGPSEATNEGQVAIIQDLIAQKPTAISVVPNDLAGLESVL
HHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCHHHHHHHHH
GQARDAGIIVVSHEAVGIKNVDIDIEGFENTAYGAQIMENLGECTGGEGEYVQFVGRLTN
HCCCCCCEEEEECCCCCEEEEEEEEECCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHCC
GSHSEWVKGAYEKQQADFPGMTRVEDPIESEENEEVAYNKAKELLSKYPDIKGFQGSAGT
CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC
DVVGIARAVEEAGKTDSVCVMGTSIPSVAGGYLESGAIDKIFFWDPAMAGKAQLAVAKIL
HHHHHHHHHHHHCCCCCEEEEECCCCHHHCCHHCCCCCCEEEEECCCCCCHHHHHHHHHH
AEGGTIEEGTDLGVPGYESLVKLDGADNAFAGNAGVAVDVENMDEYDF
HCCCCCCCCCCCCCCCHHHHEEECCCCCCCCCCCCCEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA