| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
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The map label for this gene is lolD [H]
Identifier: 119717090
GI number: 119717090
Start: 3044363
End: 3045214
Strand: Reverse
Name: lolD [H]
Synonym: Noca_2866
Alternate gene names: 119717090
Gene position: 3045214-3044363 (Counterclockwise)
Preceding gene: 119717091
Following gene: 119717089
Centisome position: 61.08
GC content: 75.94
Gene sequence:
>852_bases GTGAGCGCCGCGCGGACCGGGCTGCGGGTCAGCACGCGGCGGCTCGTCCACATCTACCGCTCCGAGGGCCACGAGGTCGC AGCGCTGTCCGGCGTCGACCTCGACGTCGAGCCCGGCGAGCTGGTCGGCCTGCTCGGCCCCTCGGGCGCCGGCAAGTCCA CGCTGCTCAGCCTGCTCGCCGGGGTGTTCCGCCCCAGCGCCGGCAAGGTGCACGTCGGCGACCTGGAGCTCTCGACCGCC GGCGCCCGCGACCTGGACCGGATGCGGGCCCAGGACGTGTCGCTGATGCTGCAGGGCGCGGACCGCAACCTGCTGCCGTA CTACCCGGCGCTGGAGAACGTCCGATTCGCCCAGCGCGCCGCTCGCCGGGCCGGCAAGGACCTGCCCGACCCCGACGACG TGCTCGCGCGCCTCGGCCTGGTCGCGGCCGCGCAGCGGCCGCTGGCCGAGCTCACCCCCGGCCACCTCCAGCTGGCCGCC CTCGCGGTCGCGATGGCCTCCCGACCGGGCCTGCTGCTCGCCGACGAGCCGACCAGCCAGCTCGACCACGCCGCCCGCGA CCAGGTGCTGGCCGCGATCGCCGAGACCAGCCGCGAGCTCGGCACCACCGTCGTCATCGTCACGCACGACCCCGACGTCG CAGCCCGGCTGCCGCGCACGATCACGATCCGCGACGGCCGGGTCGGTGGGGAGGGCCGCAGCGGCGAGGAGTACGCCGTC GTCACCCCCGACGGGTTCCTGCCGCTGCCGGTGCACGTCCGCGACCAGCTCGCGCCCGGGACGCTGGTGCGCTTCCACCC GGCCGACGGGTCCGGCTACCTCCTGGTGCCCGAGGAGGAGACCGATGAGTGA
Upstream 100 bases:
>100_bases CGGCGGTGCTCGCGGTCCTGGCGGTGCTGGCCACCTCGAGCGTGATCATCGGCCGGACGCTGGCCCGTCGCTCCGACGTA CGACGGCTCAGGGAGACGCT
Downstream 100 bases:
>100_bases GCTGCGAGCGAGCGGCCTCTCGGTGTCGTACGGCGACCTGCTGGCGCTGCACCCGCTCGACCTGGCGGTCGCCCCCGGCC GGCTGGTGTCGGTGACGGGG
Product: ABC transporter-like protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 283; Mature: 282
Protein sequence:
>283_residues MSAARTGLRVSTRRLVHIYRSEGHEVAALSGVDLDVEPGELVGLLGPSGAGKSTLLSLLAGVFRPSAGKVHVGDLELSTA GARDLDRMRAQDVSLMLQGADRNLLPYYPALENVRFAQRAARRAGKDLPDPDDVLARLGLVAAAQRPLAELTPGHLQLAA LAVAMASRPGLLLADEPTSQLDHAARDQVLAAIAETSRELGTTVVIVTHDPDVAARLPRTITIRDGRVGGEGRSGEEYAV VTPDGFLPLPVHVRDQLAPGTLVRFHPADGSGYLLVPEEETDE
Sequences:
>Translated_283_residues MSAARTGLRVSTRRLVHIYRSEGHEVAALSGVDLDVEPGELVGLLGPSGAGKSTLLSLLAGVFRPSAGKVHVGDLELSTA GARDLDRMRAQDVSLMLQGADRNLLPYYPALENVRFAQRAARRAGKDLPDPDDVLARLGLVAAAQRPLAELTPGHLQLAA LAVAMASRPGLLLADEPTSQLDHAARDQVLAAIAETSRELGTTVVIVTHDPDVAARLPRTITIRDGRVGGEGRSGEEYAV VTPDGFLPLPVHVRDQLAPGTLVRFHPADGSGYLLVPEEETDE >Mature_282_residues SAARTGLRVSTRRLVHIYRSEGHEVAALSGVDLDVEPGELVGLLGPSGAGKSTLLSLLAGVFRPSAGKVHVGDLELSTAG ARDLDRMRAQDVSLMLQGADRNLLPYYPALENVRFAQRAARRAGKDLPDPDDVLARLGLVAAAQRPLAELTPGHLQLAAL AVAMASRPGLLLADEPTSQLDHAARDQVLAAIAETSRELGTTVVIVTHDPDVAARLPRTITIRDGRVGGEGRSGEEYAVV TPDGFLPLPVHVRDQLAPGTLVRFHPADGSGYLLVPEEETDE
Specific function: Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-de
COG id: COG1136
COG function: function code V; ABC-type antimicrobial peptide transport system, ATPase component
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI215820660, Length=203, Percent_Identity=30.0492610837438, Blast_Score=78, Evalue=7e-15, Organism=Homo sapiens, GI20143975, Length=203, Percent_Identity=30.0492610837438, Blast_Score=78, Evalue=7e-15, Organism=Homo sapiens, GI27262624, Length=178, Percent_Identity=28.0898876404494, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI27262626, Length=178, Percent_Identity=28.0898876404494, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI27436953, Length=230, Percent_Identity=27.8260869565217, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI31657092, Length=199, Percent_Identity=30.6532663316583, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI9961250, Length=223, Percent_Identity=27.3542600896861, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI255708477, Length=221, Percent_Identity=26.6968325791855, Blast_Score=69, Evalue=5e-12, Organism=Escherichia coli, GI1786703, Length=219, Percent_Identity=36.0730593607306, Blast_Score=112, Evalue=3e-26, Organism=Escherichia coli, GI1787105, Length=211, Percent_Identity=35.0710900473934, Blast_Score=109, Evalue=2e-25, Organism=Escherichia coli, GI87081834, Length=219, Percent_Identity=32.8767123287671, Blast_Score=107, Evalue=7e-25, Organism=Escherichia coli, GI1789873, Length=219, Percent_Identity=34.2465753424658, Blast_Score=106, Evalue=2e-24, Organism=Escherichia coli, GI1787029, Length=209, Percent_Identity=34.9282296650718, Blast_Score=106, Evalue=2e-24, Organism=Escherichia coli, GI1788225, Length=237, Percent_Identity=33.3333333333333, Blast_Score=104, Evalue=5e-24, Organism=Escherichia coli, GI1787370, Length=219, Percent_Identity=33.3333333333333, Blast_Score=104, Evalue=6e-24, Organism=Escherichia coli, GI1786563, Length=211, Percent_Identity=31.2796208530806, Blast_Score=96, Evalue=2e-21, Organism=Escherichia coli, GI87081791, Length=213, Percent_Identity=31.4553990610329, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI1787164, Length=230, Percent_Identity=34.7826086956522, Blast_Score=92, Evalue=4e-20, Organism=Escherichia coli, GI1786398, Length=222, Percent_Identity=29.7297297297297, Blast_Score=91, Evalue=6e-20, Organism=Escherichia coli, GI1786253, Length=206, Percent_Identity=31.0679611650485, Blast_Score=90, Evalue=2e-19, Organism=Escherichia coli, GI1790544, Length=227, Percent_Identity=32.5991189427313, Blast_Score=88, Evalue=7e-19, Organism=Escherichia coli, GI1788897, Length=211, Percent_Identity=31.7535545023697, Blast_Score=88, Evalue=7e-19, Organism=Escherichia coli, GI1790467, Length=232, Percent_Identity=30.1724137931034, Blast_Score=87, Evalue=9e-19, Organism=Escherichia coli, GI1787548, Length=229, Percent_Identity=26.6375545851528, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1789672, Length=230, Percent_Identity=28.2608695652174, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI1787712, Length=211, Percent_Identity=29.8578199052133, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI1788761, Length=220, Percent_Identity=30, Blast_Score=85, Evalue=6e-18, Organism=Escherichia coli, GI1789032, Length=224, Percent_Identity=29.9107142857143, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI87082267, Length=216, Percent_Identity=28.2407407407407, Blast_Score=83, Evalue=3e-17, Organism=Escherichia coli, GI1790190, Length=232, Percent_Identity=26.2931034482759, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI1787089, Length=214, Percent_Identity=33.1775700934579, Blast_Score=82, Evalue=4e-17, Organism=Escherichia coli, GI87081709, Length=200, Percent_Identity=28, Blast_Score=82, Evalue=4e-17, Organism=Escherichia coli, GI1790525, Length=210, Percent_Identity=26.1904761904762, Blast_Score=81, Evalue=7e-17, Organism=Escherichia coli, GI1787759, Length=218, Percent_Identity=28.4403669724771, Blast_Score=81, Evalue=9e-17, Organism=Escherichia coli, GI48994943, Length=221, Percent_Identity=31.2217194570136, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI48994883, Length=204, Percent_Identity=27.9411764705882, Blast_Score=79, Evalue=4e-16, Organism=Escherichia coli, GI87081782, Length=210, Percent_Identity=30.952380952381, Blast_Score=78, Evalue=8e-16, Organism=Escherichia coli, GI1788210, Length=216, Percent_Identity=28.2407407407407, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI145693107, Length=223, Percent_Identity=24.6636771300448, Blast_Score=77, Evalue=2e-15, Organism=Escherichia coli, GI1789864, Length=194, Percent_Identity=28.3505154639175, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI1786872, Length=188, Percent_Identity=31.9148936170213, Blast_Score=75, Evalue=4e-15, Organism=Escherichia coli, GI1789891, Length=212, Percent_Identity=27.8301886792453, Blast_Score=75, Evalue=6e-15, Organism=Escherichia coli, GI1788450, Length=208, Percent_Identity=27.8846153846154, Blast_Score=75, Evalue=6e-15, Organism=Escherichia coli, GI1787758, Length=188, Percent_Identity=29.7872340425532, Blast_Score=74, Evalue=9e-15, Organism=Escherichia coli, GI1788472, Length=213, Percent_Identity=28.169014084507, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI48995001, Length=231, Percent_Identity=28.1385281385281, Blast_Score=74, Evalue=2e-14, Organism=Escherichia coli, GI1788506, Length=236, Percent_Identity=28.3898305084746, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1790739, Length=239, Percent_Identity=28.8702928870293, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1788053, Length=182, Percent_Identity=32.967032967033, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI1787112, Length=212, Percent_Identity=31.1320754716981, Blast_Score=72, Evalue=5e-14, Organism=Escherichia coli, GI1789962, Length=254, Percent_Identity=26.3779527559055, Blast_Score=72, Evalue=6e-14, Organism=Escherichia coli, GI1786345, Length=230, Percent_Identity=29.1304347826087, Blast_Score=72, Evalue=6e-14, Organism=Escherichia coli, GI1786803, Length=215, Percent_Identity=24.6511627906977, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1786319, Length=204, Percent_Identity=28.4313725490196, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI48994997, Length=223, Percent_Identity=28.2511210762332, Blast_Score=68, Evalue=6e-13, Organism=Escherichia coli, GI1789963, Length=224, Percent_Identity=29.0178571428571, Blast_Score=68, Evalue=8e-13, Organism=Escherichia coli, GI1787500, Length=202, Percent_Identity=26.2376237623762, Blast_Score=65, Evalue=4e-12, Organism=Escherichia coli, GI1789991, Length=209, Percent_Identity=25.8373205741627, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1788644, Length=230, Percent_Identity=31.7391304347826, Blast_Score=64, Evalue=2e-11, Organism=Escherichia coli, GI1789751, Length=185, Percent_Identity=29.7297297297297, Blast_Score=61, Evalue=6e-11, Organism=Caenorhabditis elegans, GI115533608, Length=224, Percent_Identity=29.4642857142857, Blast_Score=83, Evalue=1e-16, Organism=Caenorhabditis elegans, GI17558664, Length=228, Percent_Identity=27.6315789473684, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI17565586, Length=200, Percent_Identity=30.5, Blast_Score=78, Evalue=4e-15, Organism=Caenorhabditis elegans, GI193209708, Length=231, Percent_Identity=28.1385281385281, Blast_Score=75, Evalue=5e-14, Organism=Caenorhabditis elegans, GI193202349, Length=227, Percent_Identity=25.1101321585903, Blast_Score=71, Evalue=5e-13, Organism=Caenorhabditis elegans, GI193211015, Length=221, Percent_Identity=27.1493212669683, Blast_Score=70, Evalue=2e-12, Organism=Caenorhabditis elegans, GI193211017, Length=221, Percent_Identity=27.1493212669683, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI71996809, Length=221, Percent_Identity=27.1493212669683, Blast_Score=68, Evalue=4e-12, Organism=Caenorhabditis elegans, GI17541710, Length=195, Percent_Identity=28.7179487179487, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI115535101, Length=201, Percent_Identity=29.8507462686567, Blast_Score=65, Evalue=4e-11, Organism=Caenorhabditis elegans, GI115533592, Length=221, Percent_Identity=28.5067873303167, Blast_Score=65, Evalue=5e-11, Organism=Caenorhabditis elegans, GI17567265, Length=235, Percent_Identity=25.9574468085106, Blast_Score=64, Evalue=7e-11, Organism=Caenorhabditis elegans, GI71984940, Length=223, Percent_Identity=26.0089686098655, Blast_Score=64, Evalue=9e-11, Organism=Saccharomyces cerevisiae, GI6324498, Length=238, Percent_Identity=25.6302521008403, Blast_Score=74, Evalue=3e-14, Organism=Saccharomyces cerevisiae, GI6321720, Length=217, Percent_Identity=27.1889400921659, Blast_Score=72, Evalue=1e-13, Organism=Saccharomyces cerevisiae, GI6323217, Length=204, Percent_Identity=27.9411764705882, Blast_Score=63, Evalue=4e-11, Organism=Drosophila melanogaster, GI85725262, Length=234, Percent_Identity=29.4871794871795, Blast_Score=79, Evalue=4e-15, Organism=Drosophila melanogaster, GI281363262, Length=218, Percent_Identity=28.8990825688073, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI24653245, Length=218, Percent_Identity=28.8990825688073, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI221512771, Length=213, Percent_Identity=25.3521126760563, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI24582014, Length=222, Percent_Identity=27.027027027027, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI24582012, Length=222, Percent_Identity=27.027027027027, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI24666092, Length=206, Percent_Identity=24.2718446601942, Blast_Score=65, Evalue=7e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR015854 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 29976; Mature: 29845
Theoretical pI: Translated: 5.37; Mature: 5.37
Prosite motif: PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAARTGLRVSTRRLVHIYRSEGHEVAALSGVDLDVEPGELVGLLGPSGAGKSTLLSLLA CCCCCCCCCHHHHHHHHEECCCCCEEEEEECCCCCCCCCCEEEEECCCCCCHHHHHHHHH GVFRPSAGKVHVGDLELSTAGARDLDRMRAQDVSLMLQGADRNLLPYYPALENVRFAQRA HHHCCCCCEEEECCEEECCCCCHHHHHHHHHCCEEEEECCCCCCCCCCCCHHHHHHHHHH ARRAGKDLPDPDDVLARLGLVAAAQRPLAELTPGHLQLAALAVAMASRPGLLLADEPTSQ HHHHCCCCCCHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHHCCCCEEEECCCHHH LDHAARDQVLAAIAETSRELGTTVVIVTHDPDVAARLPRTITIRDGRVGGEGRSGEEYAV HHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCHHHHCCCEEEEECCCCCCCCCCCCEEEE VTPDGFLPLPVHVRDQLAPGTLVRFHPADGSGYLLVPEEETDE ECCCCCEECCCCHHCCCCCCCEEEEECCCCCEEEEECCCCCCC >Mature Secondary Structure SAARTGLRVSTRRLVHIYRSEGHEVAALSGVDLDVEPGELVGLLGPSGAGKSTLLSLLA CCCCCCCCHHHHHHHHEECCCCCEEEEEECCCCCCCCCCEEEEECCCCCCHHHHHHHHH GVFRPSAGKVHVGDLELSTAGARDLDRMRAQDVSLMLQGADRNLLPYYPALENVRFAQRA HHHCCCCCEEEECCEEECCCCCHHHHHHHHHCCEEEEECCCCCCCCCCCCHHHHHHHHHH ARRAGKDLPDPDDVLARLGLVAAAQRPLAELTPGHLQLAALAVAMASRPGLLLADEPTSQ HHHHCCCCCCHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHHCCCCEEEECCCHHH LDHAARDQVLAAIAETSRELGTTVVIVTHDPDVAARLPRTITIRDGRVGGEGRSGEEYAV HHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCHHHHCCCEEEEECCCCCCCCCCCCEEEE VTPDGFLPLPVHVRDQLAPGTLVRFHPADGSGYLLVPEEETDE ECCCCCEECCCCHHCCCCCCCEEEEECCCCCEEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA