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The map label for this gene is scpB [H]

Identifier: 119716722

GI number: 119716722

Start: 2665270

End: 2665995

Strand: Direct

Name: scpB [H]

Synonym: Noca_2496

Alternate gene names: 119716722

Gene position: 2665270-2665995 (Clockwise)

Preceding gene: 119716721

Following gene: 119716723

Centisome position: 53.46

GC content: 73.42

Gene sequence:

>726_bases
ATGACGACTGAGATCACGGCCGAGACGACGGAGGCGGCCGAGACGCTCGCCGTCCCGGTGGCCGAGCTGCGGCCGGCACT
CGAGGCGCTGCTGATCATCGCCGACCAACCGATGGACACGATGACGCTCGCCACGGCGGCGGGCTACCCGGTCGCCGAGG
TGAGCACGGCCCTGGAGGGGCTGGCGGTGGAGTACACCGAGCAGGGCCGGGGCTTCGAGCTGCGGCACGTCGGCGGGGGC
TGGCGCTACTACACCCGCGACGAGTACGCCGCGGTCGTGGAAGGCTTCGTGCTCGACGGTCAGCAGGCGCGGCTGACGCA
GGCCGCGTTGGAGACGCTGGCCGTGGTCGCCTACAAGCAGCCCGTCTCCCGTGCCCGGGTGTCGGCGATCCGCGGGGTGA
ACGTCGACGGCGTGATGCGGACGCTGCTGACCCGGGGCCTGGTCGAGGAGGCCGGCCACGACCACGAGACCGGGGCCAAC
CTCTACCGCACGACGACCTACTTCCTCGAGCGGATCGGGGTCACCTCGCTCGACGACCTGCCCGAGCTGGCGCCGTACCT
GCCGGACATGGACGACCTCGAGGAGGAGCTCGCCGAGATGGCGGCGCCGCACCCGACCGAGACCGCCACCGAGGCGGCGC
CCGAGCCGGAGCCGCAGCCGGGGCACCCCCACTCCCCGCACAGCGGCGACGGGACCGAGCCCGACGGGGGGACCGAGCCC
ACGTGA

Upstream 100 bases:

>100_bases
GACGGCGCGCCGCCCGAGCCGAGTGCCGTGCCGGAGGGAGAGAGCGATGACCGAGTCCCAGCCGGAGACCCAGCCGACCC
AGCCGGAGGCGCAGGACCAG

Downstream 100 bases:

>100_bases
CCACCCCGGGCATCGAGTCCGACGACGACGGCCTGGTCCGGCTGCAGAAGCTGCTCGCCCAGTCCGGCGTCGCGTCGCGG
CGCAAGTGCGAGGAGCTGAT

Product: condensin subunit ScpB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 241; Mature: 240

Protein sequence:

>241_residues
MTTEITAETTEAAETLAVPVAELRPALEALLIIADQPMDTMTLATAAGYPVAEVSTALEGLAVEYTEQGRGFELRHVGGG
WRYYTRDEYAAVVEGFVLDGQQARLTQAALETLAVVAYKQPVSRARVSAIRGVNVDGVMRTLLTRGLVEEAGHDHETGAN
LYRTTTYFLERIGVTSLDDLPELAPYLPDMDDLEEELAEMAAPHPTETATEAAPEPEPQPGHPHSPHSGDGTEPDGGTEP
T

Sequences:

>Translated_241_residues
MTTEITAETTEAAETLAVPVAELRPALEALLIIADQPMDTMTLATAAGYPVAEVSTALEGLAVEYTEQGRGFELRHVGGG
WRYYTRDEYAAVVEGFVLDGQQARLTQAALETLAVVAYKQPVSRARVSAIRGVNVDGVMRTLLTRGLVEEAGHDHETGAN
LYRTTTYFLERIGVTSLDDLPELAPYLPDMDDLEEELAEMAAPHPTETATEAAPEPEPQPGHPHSPHSGDGTEPDGGTEP
T
>Mature_240_residues
TTEITAETTEAAETLAVPVAELRPALEALLIIADQPMDTMTLATAAGYPVAEVSTALEGLAVEYTEQGRGFELRHVGGGW
RYYTRDEYAAVVEGFVLDGQQARLTQAALETLAVVAYKQPVSRARVSAIRGVNVDGVMRTLLTRGLVEEAGHDHETGANL
YRTTTYFLERIGVTSLDDLPELAPYLPDMDDLEEELAEMAAPHPTETATEAAPEPEPQPGHPHSPHSGDGTEPDGGTEPT

Specific function: Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing smc and scpA that pull DNA away from mid-cell into both cell halves [H]

COG id: COG1386

COG function: function code K; Predicted transcriptional regulator containing the HTH domain

Gene ontology:

Cell location: Cytoplasm. Note=Associated with two foci at the outer edges of the nucleoid region in young cells, and at four foci within both cell halves in older cells (By similarity) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the scpB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005234
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04079 DUF387 [H]

EC number: NA

Molecular weight: Translated: 25868; Mature: 25737

Theoretical pI: Translated: 4.05; Mature: 4.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTEITAETTEAAETLAVPVAELRPALEALLIIADQPMDTMTLATAAGYPVAEVSTALEG
CCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHH
LAVEYTEQGRGFELRHVGGGWRYYTRDEYAAVVEGFVLDGQQARLTQAALETLAVVAYKQ
HEEEEECCCCCEEEEECCCCCEECCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
PVSRARVSAIRGVNVDGVMRTLLTRGLVEEAGHDHETGANLYRTTTYFLERIGVTSLDDL
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCHHHH
PELAPYLPDMDDLEEELAEMAAPHPTETATEAAPEPEPQPGHPHSPHSGDGTEPDGGTEP
HHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T
C
>Mature Secondary Structure 
TTEITAETTEAAETLAVPVAELRPALEALLIIADQPMDTMTLATAAGYPVAEVSTALEG
CCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHH
LAVEYTEQGRGFELRHVGGGWRYYTRDEYAAVVEGFVLDGQQARLTQAALETLAVVAYKQ
HEEEEECCCCCEEEEECCCCCEECCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
PVSRARVSAIRGVNVDGVMRTLLTRGLVEEAGHDHETGANLYRTTTYFLERIGVTSLDDL
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCHHHH
PELAPYLPDMDDLEEELAEMAAPHPTETATEAAPEPEPQPGHPHSPHSGDGTEPDGGTEP
HHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T
C

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA