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The map label for this gene is xerD [H]

Identifier: 119716715

GI number: 119716715

Start: 2657331

End: 2658287

Strand: Direct

Name: xerD [H]

Synonym: Noca_2489

Alternate gene names: 119716715

Gene position: 2657331-2658287 (Clockwise)

Preceding gene: 119716714

Following gene: 119716716

Centisome position: 53.3

GC content: 74.82

Gene sequence:

>957_bases
GTGAACGACCCAGCGTCGAACGACGTCGCGCGCGCGGTCCGGACCTACCTCGACCACCTGACGGTCGAGCGCGGCCTCGC
GACGAACACGCTGACGTCGTATCGGCGCGACCTGCGGCGCTACCAGGAGTACCTCGCCGAGTGCGGCGTGGAGCACCTGG
CCGACGTCACGGAGGGCACGGTGGCGGCGTTCCTGGTGCGGCTGAGGGAAGGCGACCGGGACCACCCGGCGCTGAGCGCC
ACCTCCGCCGCGCGGACCGTGGTGGCCGTGCGCGGCTTCCACCGGTTCGCGGTCGCGGACGGCCTCGCCGCGACCGACCC
GGCGAGCGCGGTGAAGCCGCCGACACCGGCCAAGCGGCTGCCGAAGGCCCTGCCGCTCGCCGACGTCGAGGCGATCCTGG
AGGCGGCGGGCGCTCCCGGCACCACCCTCGCGCTGCGGGACCGGGCGCTGCTGGAGGTCCTCTACGGCACCGGCGCCCGG
ATCTCGGAGGCCGTGGGCCTGGACGTGGACGACCTCGACTGGGGAGAGTCCGGGGTCGAGGGGACCGTCCTGCTGCGCGG
CAAGGGCGGCAAGGAGCGGCTGGTCCCGGTCGGCTCCTACGCCCGGGAGGCGGTCGACGCCTACCTCGTGCGCGGTCGTC
CGGAGCTGGTGGCCGCCTCGGCGCGCGTCACCGGGGGCGCGTTGTTCCTCAATGCGCGCGGTGGCCGGCTCTCGCGGCAG
TCGGCCTGGGCGGTGCTGGTGCGGGCGGCCGAGCGGGCCGGCGTCACCCGGGACGTGTCGCCGCACACGCTGCGACACTC
CTTCGCCACCCACCTGCTCGACGGTGGGGCCGACGTCCGCGTCGTGCAGGAGCTGCTCGGCCACGCGTCGGTGACCACCA
CCCAGGTCTATACCCTCGTGACGGTGGACAACCTGCGCGAGGTTTTCGCCACCGCCCATCCGCGCGCTCGCGACTGA

Upstream 100 bases:

>100_bases
GCCTGGCCCTCGGCCTGAACACCCACGCGGGCCGGCTCACGAACGCGGCCGTGGGTGCGGCGGTCGGGGTCGCGGCCGAC
CCGTTGGACTCCGTCCTGAC

Downstream 100 bases:

>100_bases
GCGGCCGTGGCCGACCTGCTCGACGAAATCACCGCCGCGGCCACCGCGCGCGGGCTGACCCTCTACCCGCACCAGGAGGA
GGCGATCCTTGCCGTGCTGG

Product: tyrosine recombinase XerD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 318; Mature: 318

Protein sequence:

>318_residues
MNDPASNDVARAVRTYLDHLTVERGLATNTLTSYRRDLRRYQEYLAECGVEHLADVTEGTVAAFLVRLREGDRDHPALSA
TSAARTVVAVRGFHRFAVADGLAATDPASAVKPPTPAKRLPKALPLADVEAILEAAGAPGTTLALRDRALLEVLYGTGAR
ISEAVGLDVDDLDWGESGVEGTVLLRGKGGKERLVPVGSYAREAVDAYLVRGRPELVAASARVTGGALFLNARGGRLSRQ
SAWAVLVRAAERAGVTRDVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQVYTLVTVDNLREVFATAHPRARD

Sequences:

>Translated_318_residues
MNDPASNDVARAVRTYLDHLTVERGLATNTLTSYRRDLRRYQEYLAECGVEHLADVTEGTVAAFLVRLREGDRDHPALSA
TSAARTVVAVRGFHRFAVADGLAATDPASAVKPPTPAKRLPKALPLADVEAILEAAGAPGTTLALRDRALLEVLYGTGAR
ISEAVGLDVDDLDWGESGVEGTVLLRGKGGKERLVPVGSYAREAVDAYLVRGRPELVAASARVTGGALFLNARGGRLSRQ
SAWAVLVRAAERAGVTRDVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQVYTLVTVDNLREVFATAHPRARD
>Mature_318_residues
MNDPASNDVARAVRTYLDHLTVERGLATNTLTSYRRDLRRYQEYLAECGVEHLADVTEGTVAAFLVRLREGDRDHPALSA
TSAARTVVAVRGFHRFAVADGLAATDPASAVKPPTPAKRLPKALPLADVEAILEAAGAPGTTLALRDRALLEVLYGTGAR
ISEAVGLDVDDLDWGESGVEGTVLLRGKGGKERLVPVGSYAREAVDAYLVRGRPELVAASARVTGGALFLNARGGRLSRQ
SAWAVLVRAAERAGVTRDVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQVYTLVTVDNLREVFATAHPRARD

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4974

COG function: function code L; Site-specific recombinase XerD

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=312, Percent_Identity=41.9871794871795, Blast_Score=212, Evalue=3e-56,
Organism=Escherichia coli, GI1790244, Length=310, Percent_Identity=37.4193548387097, Blast_Score=181, Evalue=6e-47,
Organism=Escherichia coli, GI1790768, Length=179, Percent_Identity=34.0782122905028, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1790767, Length=195, Percent_Identity=26.1538461538462, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011932 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 33951; Mature: 33951

Theoretical pI: Translated: 7.85; Mature: 7.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
0.3 %Met     (Translated Protein)
0.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.3 %Met     (Mature Protein)
0.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDPASNDVARAVRTYLDHLTVERGLATNTLTSYRRDLRRYQEYLAECGVEHLADVTEGT
CCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
VAAFLVRLREGDRDHPALSATSAARTVVAVRGFHRFAVADGLAATDPASAVKPPTPAKRL
HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHC
PKALPLADVEAILEAAGAPGTTLALRDRALLEVLYGTGARISEAVGLDVDDLDWGESGVE
CCCCCHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCC
GTVLLRGKGGKERLVPVGSYAREAVDAYLVRGRPELVAASARVTGGALFLNARGGRLSRQ
EEEEEECCCCCCCEEECHHHHHHHHHHHHHCCCCHHEEECCEECCCEEEEECCCCCCCHH
SAWAVLVRAAERAGVTRDVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQVYTLV
HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHEEEEE
TVDNLREVFATAHPRARD
EHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MNDPASNDVARAVRTYLDHLTVERGLATNTLTSYRRDLRRYQEYLAECGVEHLADVTEGT
CCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
VAAFLVRLREGDRDHPALSATSAARTVVAVRGFHRFAVADGLAATDPASAVKPPTPAKRL
HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHC
PKALPLADVEAILEAAGAPGTTLALRDRALLEVLYGTGARISEAVGLDVDDLDWGESGVE
CCCCCHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCC
GTVLLRGKGGKERLVPVGSYAREAVDAYLVRGRPELVAASARVTGGALFLNARGGRLSRQ
EEEEEECCCCCCCEEECHHHHHHHHHHHHHCCCCHHEEECCEECCCEEEEECCCCCCCHH
SAWAVLVRAAERAGVTRDVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQVYTLV
HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHEEEEE
TVDNLREVFATAHPRARD
EHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]