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The map label for this gene is rpe [H]

Identifier: 119716672

GI number: 119716672

Start: 2608438

End: 2609100

Strand: Direct

Name: rpe [H]

Synonym: Noca_2446

Alternate gene names: 119716672

Gene position: 2608438-2609100 (Clockwise)

Preceding gene: 119716671

Following gene: 119716673

Centisome position: 52.32

GC content: 72.4

Gene sequence:

>663_bases
GTGGGCATCCAGATCACCCCGAGCATCCTGAACGCCGACTTCGCCGCGCTCGGCGCCGAGGTCGCCCGGATCGGCAGCGC
CGACTGGGTGCACGTGGACGTGATGGACAACCACTTCGTCCCTAACCTCACGTTCGGCCCGACCATGGTCGAGGCGCTCG
CCCGGTCGACCGAGGTGCCGCTCGACGCCCACCTGATGGTCGAGGTCCCCGACCGGCACGCGCTCGCGTACGTCGAGGCC
GGCTGCGGATCGGTCACCTTCCACGTCGAGGCCGCGCAGGCGCCCGTCCGACTGGCCCGCGAGATCCGCGCGCACGGCGC
CCGGGCGAGCATGGCGCTGCGTCCGGCCACGCCGGTCGAGCCCTACGAGGACCTGCTGCCCGAGCTCGACATGCTGCTGA
TCATGACCGTCGAGCCCGGCTTCGGCGGCCAGCGGTTCCTCGACCTGTGCCTGCCGAAGATCCGCCGGGCCCGCGAGCTG
ATGGACAAGCACGGGCTGGAGACCTGGCTGCAGGTCGACGGCGGCATCAGCCTGGAGACGATCGAGCGCTGCGTGGACGC
CGGTGCCGACGTGTTCGTCGCCGGTTCGGCCGTCTACTCCGCCGCGGACCCCGACCGGATGGTCGCCGAGCTGAGGGCCG
CCGCCGAGCGCGCCGTCCGCTGA

Upstream 100 bases:

>100_bases
GGGGCCGTTCGACATCGCGTCGCTCCTGGAGTGGGCCGACCGCGACGAGCGCGACGGCGCCGCCGGTCCCGACGACGAGC
AGTCCGAATAGGCTGGCCCG

Downstream 100 bases:

>100_bases
CCCACGCCGTTGGTGACCGAACCGCGCTGCTGGGCGACCGCGCGGCCGGTCTCACCGCGGCGGCCCCACGCCTCGGCGTC
TGATGCCGTGTGGCAGACTG

Product: ribulose-phosphate 3-epimerase

Products: NA

Alternate protein names: Pentose-5-phosphate 3-epimerase; PPE; R5P3E [H]

Number of amino acids: Translated: 220; Mature: 219

Protein sequence:

>220_residues
MGIQITPSILNADFAALGAEVARIGSADWVHVDVMDNHFVPNLTFGPTMVEALARSTEVPLDAHLMVEVPDRHALAYVEA
GCGSVTFHVEAAQAPVRLAREIRAHGARASMALRPATPVEPYEDLLPELDMLLIMTVEPGFGGQRFLDLCLPKIRRAREL
MDKHGLETWLQVDGGISLETIERCVDAGADVFVAGSAVYSAADPDRMVAELRAAAERAVR

Sequences:

>Translated_220_residues
MGIQITPSILNADFAALGAEVARIGSADWVHVDVMDNHFVPNLTFGPTMVEALARSTEVPLDAHLMVEVPDRHALAYVEA
GCGSVTFHVEAAQAPVRLAREIRAHGARASMALRPATPVEPYEDLLPELDMLLIMTVEPGFGGQRFLDLCLPKIRRAREL
MDKHGLETWLQVDGGISLETIERCVDAGADVFVAGSAVYSAADPDRMVAELRAAAERAVR
>Mature_219_residues
GIQITPSILNADFAALGAEVARIGSADWVHVDVMDNHFVPNLTFGPTMVEALARSTEVPLDAHLMVEVPDRHALAYVEAG
CGSVTFHVEAAQAPVRLAREIRAHGARASMALRPATPVEPYEDLLPELDMLLIMTVEPGFGGQRFLDLCLPKIRRARELM
DKHGLETWLQVDGGISLETIERCVDAGADVFVAGSAVYSAADPDRMVAELRAAAERAVR

Specific function: Unknown

COG id: COG0036

COG function: function code G; Pentose-5-phosphate-3-epimerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribulose-phosphate 3-epimerase family [H]

Homologues:

Organism=Homo sapiens, GI40385883, Length=223, Percent_Identity=40.3587443946188, Blast_Score=174, Evalue=6e-44,
Organism=Homo sapiens, GI219879828, Length=223, Percent_Identity=38.1165919282511, Blast_Score=162, Evalue=2e-40,
Organism=Homo sapiens, GI24307923, Length=175, Percent_Identity=32.5714285714286, Blast_Score=106, Evalue=1e-23,
Organism=Escherichia coli, GI1789788, Length=212, Percent_Identity=42.4528301886792, Blast_Score=178, Evalue=3e-46,
Organism=Escherichia coli, GI1790523, Length=197, Percent_Identity=37.0558375634518, Blast_Score=140, Evalue=7e-35,
Organism=Escherichia coli, GI1790754, Length=207, Percent_Identity=34.7826086956522, Blast_Score=108, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI17552948, Length=222, Percent_Identity=42.3423423423423, Blast_Score=162, Evalue=1e-40,
Organism=Saccharomyces cerevisiae, GI6322341, Length=231, Percent_Identity=40.6926406926407, Blast_Score=183, Evalue=2e-47,
Organism=Drosophila melanogaster, GI24586301, Length=212, Percent_Identity=41.5094339622642, Blast_Score=167, Evalue=3e-42,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000056
- InterPro:   IPR011060 [H]

Pfam domain/function: PF00834 Ribul_P_3_epim [H]

EC number: =5.1.3.1 [H]

Molecular weight: Translated: 23808; Mature: 23676

Theoretical pI: Translated: 4.65; Mature: 4.65

Prosite motif: PS01085 RIBUL_P_3_EPIMER_1 ; PS01086 RIBUL_P_3_EPIMER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGIQITPSILNADFAALGAEVARIGSADWVHVDVMDNHFVPNLTFGPTMVEALARSTEVP
CCCEECHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCC
LDAHLMVEVPDRHALAYVEAGCGSVTFHVEAAQAPVRLAREIRAHGARASMALRPATPVE
CCEEEEEECCCCCEEEEEECCCCEEEEEEEHHHHHHHHHHHHHHCCCHHCEEECCCCCCC
PYEDLLPELDMLLIMTVEPGFGGQRFLDLCLPKIRRARELMDKHGLETWLQVDGGISLET
CHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHH
IERCVDAGADVFVAGSAVYSAADPDRMVAELRAAAERAVR
HHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
GIQITPSILNADFAALGAEVARIGSADWVHVDVMDNHFVPNLTFGPTMVEALARSTEVP
CCEECHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCC
LDAHLMVEVPDRHALAYVEAGCGSVTFHVEAAQAPVRLAREIRAHGARASMALRPATPVE
CCEEEEEECCCCCEEEEEECCCCEEEEEEEHHHHHHHHHHHHHHCCCHHCEEECCCCCCC
PYEDLLPELDMLLIMTVEPGFGGQRFLDLCLPKIRRARELMDKHGLETWLQVDGGISLET
CHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHH
IERCVDAGADVFVAGSAVYSAADPDRMVAELRAAAERAVR
HHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12000953 [H]