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The map label for this gene is ycaJ [C]

Identifier: 119716631

GI number: 119716631

Start: 2564088

End: 2565458

Strand: Direct

Name: ycaJ [C]

Synonym: Noca_2404

Alternate gene names: 119716631

Gene position: 2564088-2565458 (Clockwise)

Preceding gene: 119716630

Following gene: 119716632

Centisome position: 51.43

GC content: 73.74

Gene sequence:

>1371_bases
GTGGACGAGGGACTCTTCGCGGCGCCGGGTACGGCGGCCCGCACCGGCGGCGGCTCGCTGAGCGCGAACACCCATGCCTC
GGCGCCGCTGGCGGTGCGGATGCGGCCGCGCACGCTCGACGAGCTCGTCGGGCAGGCGCAGCTGCGGGCCGCCGGGTCGC
CGCTGCGCCGCCTGGTCGAGGGTGACCAGTCGATGTCCTTGCTGCTGTGGGGCCCGCCGGGCACCGGCAAGACGACGATC
GCGGCGATCGTGAGCCAGCAGACCGACCGGCGCTTCGTCGAGGTCTCGGCCGTCTCGGCCGGCGTCAAGGAGGTGCGGGC
CGCGATCGACGCGGCTCGTGCCGAGCTCGCCGGCGGCGGCCGGGAGACGGTCCTCTTCGTCGACGAGGTGCACCGGTTCA
GCAAGGCCCAGCAGGACGCCCTGCTGCCCGGCGTCGAGAACCGGTGGGTCACGCTGATCGCCGCGACCACGGAGAACCCG
TTCTTCAGCGTGATCTCGCCGCTGCTCTCCCGGAGCCTGCTGCTGCGCCTCGAGTCCCTCGACGACGACGACGTCCGCGC
CGTGCTCGACCGGGCCATCACCGACGAGCGCGGGCTCGCCGGGTCCGTGGGCGTCGACGACGATGCCCTGGGCCACCTGG
TCCGGCTCGCCGGCGGCGACGCGCGCCGCTCCCTCACCTACCTCGAGGCGGCGGCCGGAGCGGCGCTCGCGCAGGGGCTC
GAGACCGTCGACCTGGCCACCGCCGAGACCGCGGTCGACCGGGCCGCGGTGCGCTACGACCGGCAGGGAGACCAGCACTA
CGACGTCGTCAGCGCCTTCATCAAGTCGGTCCGGGGGTCCGATGCCGACGCAGCCCTGCACTACCTGGCCCGGATGATCG
AGGCGGGCGAGGACCCGCGGTTCATCGCCCGCCGGCTGATGATCCTCGCCTCCGAGGACGTCGGCCTCGCCGACCCGACG
GCGCTGCCGACTGCCGTCGCCGCGGCGCAGACCGTGCAGCTGATCGGCATGCCCGAGGCGCAGCTCACCCTCGCTCACGC
CACCATCGCCCTGGCGGTCGCGCCGAAGTCCAACGCGGTCACCACCGCGATCGGGGCGGCGCTGGCCGACGTCAGGGCGG
GGAAGATCGGCCAGGTGCCGCCCCACCTGCGCGACGCGCACTACTCGGGGGCCAAGAAGCTGGGACACGGCGCGAGGTAC
AAGTACAGCCACGACGAGCCGTTCGGCATCGCCGAGCAGCAGTACGCCCCCGACGTGGTTGCCGACGCCGAGTACTACCG
GCCGACCACGCTGGGCGCCGAGGCGGCGATCAAGGAGCGCTGGGAACGGGTTCGCCGGCTGATTCGCGGCCAGCGACAGG
GCGAACGATAG

Upstream 100 bases:

>100_bases
GGTCGGCAACGATCCCGGGTACGCCGACACGTGGTTCGACCTCGAGCGCAAGACGATGGCCTCCGCCTGACCCGTTGGGT
CCGGGCCCTAGCCTGATCGG

Downstream 100 bases:

>100_bases
GGTCGGTGACCATGCAGGACTGGACCCTCCCCGCCGTGGCCGTGGCGCTCGCGCTGCTGGCCCTGGGGCTCGGCGCCGCC
CTGTACCGCTCCCGGTCCCG

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 456; Mature: 456

Protein sequence:

>456_residues
MDEGLFAAPGTAARTGGGSLSANTHASAPLAVRMRPRTLDELVGQAQLRAAGSPLRRLVEGDQSMSLLLWGPPGTGKTTI
AAIVSQQTDRRFVEVSAVSAGVKEVRAAIDAARAELAGGGRETVLFVDEVHRFSKAQQDALLPGVENRWVTLIAATTENP
FFSVISPLLSRSLLLRLESLDDDDVRAVLDRAITDERGLAGSVGVDDDALGHLVRLAGGDARRSLTYLEAAAGAALAQGL
ETVDLATAETAVDRAAVRYDRQGDQHYDVVSAFIKSVRGSDADAALHYLARMIEAGEDPRFIARRLMILASEDVGLADPT
ALPTAVAAAQTVQLIGMPEAQLTLAHATIALAVAPKSNAVTTAIGAALADVRAGKIGQVPPHLRDAHYSGAKKLGHGARY
KYSHDEPFGIAEQQYAPDVVADAEYYRPTTLGAEAAIKERWERVRRLIRGQRQGER

Sequences:

>Translated_456_residues
MDEGLFAAPGTAARTGGGSLSANTHASAPLAVRMRPRTLDELVGQAQLRAAGSPLRRLVEGDQSMSLLLWGPPGTGKTTI
AAIVSQQTDRRFVEVSAVSAGVKEVRAAIDAARAELAGGGRETVLFVDEVHRFSKAQQDALLPGVENRWVTLIAATTENP
FFSVISPLLSRSLLLRLESLDDDDVRAVLDRAITDERGLAGSVGVDDDALGHLVRLAGGDARRSLTYLEAAAGAALAQGL
ETVDLATAETAVDRAAVRYDRQGDQHYDVVSAFIKSVRGSDADAALHYLARMIEAGEDPRFIARRLMILASEDVGLADPT
ALPTAVAAAQTVQLIGMPEAQLTLAHATIALAVAPKSNAVTTAIGAALADVRAGKIGQVPPHLRDAHYSGAKKLGHGARY
KYSHDEPFGIAEQQYAPDVVADAEYYRPTTLGAEAAIKERWERVRRLIRGQRQGER
>Mature_456_residues
MDEGLFAAPGTAARTGGGSLSANTHASAPLAVRMRPRTLDELVGQAQLRAAGSPLRRLVEGDQSMSLLLWGPPGTGKTTI
AAIVSQQTDRRFVEVSAVSAGVKEVRAAIDAARAELAGGGRETVLFVDEVHRFSKAQQDALLPGVENRWVTLIAATTENP
FFSVISPLLSRSLLLRLESLDDDDVRAVLDRAITDERGLAGSVGVDDDALGHLVRLAGGDARRSLTYLEAAAGAALAQGL
ETVDLATAETAVDRAAVRYDRQGDQHYDVVSAFIKSVRGSDADAALHYLARMIEAGEDPRFIARRLMILASEDVGLADPT
ALPTAVAAAQTVQLIGMPEAQLTLAHATIALAVAPKSNAVTTAIGAALADVRAGKIGQVPPHLRDAHYSGAKKLGHGARY
KYSHDEPFGIAEQQYAPDVVADAEYYRPTTLGAEAAIKERWERVRRLIRGQRQGER

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AAA ATPase family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=439, Percent_Identity=39.8633257403189, Blast_Score=291, Evalue=8e-79,
Organism=Homo sapiens, GI18426904, Length=439, Percent_Identity=36.4464692482916, Blast_Score=248, Evalue=6e-66,
Organism=Homo sapiens, GI4506491, Length=231, Percent_Identity=28.5714285714286, Blast_Score=71, Evalue=2e-12,
Organism=Homo sapiens, GI31881687, Length=231, Percent_Identity=28.5714285714286, Blast_Score=71, Evalue=2e-12,
Organism=Escherichia coli, GI1787119, Length=429, Percent_Identity=45.6876456876457, Blast_Score=337, Evalue=8e-94,
Organism=Escherichia coli, GI1788167, Length=197, Percent_Identity=31.4720812182741, Blast_Score=67, Evalue=2e-12,
Organism=Saccharomyces cerevisiae, GI6324111, Length=424, Percent_Identity=36.3207547169811, Blast_Score=266, Evalue=4e-72,
Organism=Drosophila melanogaster, GI18859927, Length=230, Percent_Identity=30, Blast_Score=86, Evalue=4e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 48437; Mature: 48437

Theoretical pI: Translated: 6.20; Mature: 6.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDEGLFAAPGTAARTGGGSLSANTHASAPLAVRMRPRTLDELVGQAQLRAAGSPLRRLVE
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCHHHHHHHC
GDQSMSLLLWGPPGTGKTTIAAIVSQQTDRRFVEVSAVSAGVKEVRAAIDAARAELAGGG
CCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCC
RETVLFVDEVHRFSKAQQDALLPGVENRWVTLIAATTENPFFSVISPLLSRSLLLRLESL
CEEEEEHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHCC
DDDDVRAVLDRAITDERGLAGSVGVDDDALGHLVRLAGGDARRSLTYLEAAAGAALAQGL
CCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC
ETVDLATAETAVDRAAVRYDRQGDQHYDVVSAFIKSVRGSDADAALHYLARMIEAGEDPR
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHH
FIARRLMILASEDVGLADPTALPTAVAAAQTVQLIGMPEAQLTLAHATIALAVAPKSNAV
HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHEECCCCHHEEEEEEEEEEEECCCCCCH
TTAIGAALADVRAGKIGQVPPHLRDAHYSGAKKLGHGARYKYSHDEPFGIAEQQYAPDVV
HHHHHHHHHHHCCCCCCCCCCCHHHCCCCCHHHHCCCCCCCCCCCCCCCCCCHHCCCCHH
ADAEYYRPTTLGAEAAIKERWERVRRLIRGQRQGER
CCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MDEGLFAAPGTAARTGGGSLSANTHASAPLAVRMRPRTLDELVGQAQLRAAGSPLRRLVE
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCHHHHHHHC
GDQSMSLLLWGPPGTGKTTIAAIVSQQTDRRFVEVSAVSAGVKEVRAAIDAARAELAGGG
CCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCC
RETVLFVDEVHRFSKAQQDALLPGVENRWVTLIAATTENPFFSVISPLLSRSLLLRLESL
CEEEEEHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHCC
DDDDVRAVLDRAITDERGLAGSVGVDDDALGHLVRLAGGDARRSLTYLEAAAGAALAQGL
CCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC
ETVDLATAETAVDRAAVRYDRQGDQHYDVVSAFIKSVRGSDADAALHYLARMIEAGEDPR
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHH
FIARRLMILASEDVGLADPTALPTAVAAAQTVQLIGMPEAQLTLAHATIALAVAPKSNAV
HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHEECCCCHHEEEEEEEEEEEECCCCCCH
TTAIGAALADVRAGKIGQVPPHLRDAHYSGAKKLGHGARYKYSHDEPFGIAEQQYAPDVV
HHHHHHHHHHHCCCCCCCCCCCHHHCCCCCHHHHCCCCCCCCCCCCCCCCCCHHCCCCHH
ADAEYYRPTTLGAEAAIKERWERVRRLIRGQRQGER
CCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]