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The map label for this gene is dppB [H]

Identifier: 119716628

GI number: 119716628

Start: 2560713

End: 2561729

Strand: Direct

Name: dppB [H]

Synonym: Noca_2401

Alternate gene names: 119716628

Gene position: 2560713-2561729 (Clockwise)

Preceding gene: 119716627

Following gene: 119716629

Centisome position: 51.36

GC content: 65.68

Gene sequence:

>1017_bases
ATGTTCGCGTACATCGTCCGCCGGCTCTTCATCGGCGTGATCCTGCTGATCGTGATGAGCCTGGTGACGTTCATCCTGTT
CTTCGCCTCGCCGGTCGACCCGGCGCGGTTCGCCTGCGGCAAGAACTGTTCGCTGGCCCAGATCGAGCAGACCCGCAAGG
CCCTGGGCTACGACGACGGCCCGCTGACGCAGTGGACCAGCTTCCTCGAGGGCGTCGTCGTCGGGCGCGACTACCCCGAC
GACCCGGAGCTGCGGAAGAATGCGCCCGAGCTGATCGCGGACTGCGCGGCGCCCTGCCTGGGCTACTCCCGGGTCAACCA
GGTGACCGTCGCCTCCGAGATCAAGGAGGCGTTCCCGGTCTCGCTGTCGCTGGCCATCTTGGCGTTCATCATGTGGATCG
CCGGCGGCGTGCTCTTCGGAGTCATAGCGGCGATCACCAAGGGGACCGTCATAGACCGCGGCATCGTGGCGGCGTCGCTC
GTCTTCTACGCGTTCCCGACGTTCTTCATCGGCTTGTTCTTGTTGAAGTTCATCGCGATCAAGTGGGGGCTGGTCGACGT
GCCCAGCTACGTGTCGATCGCCGAGGGCGGCGTCGGCACCTGGCTGAGCAACCTCTTCCTACCCGCCCTGACCCTCGCGC
TGTTCTTCATGGCCGGGTACGTCCGGATGACGCGCGCCTTCGTCCTGGAGTCGATGAGCGAGGACTACATCCGCACCGCC
CGGGCCAAGGGGCTCAAGCGCGGCCGGGTGCTGTACAAGCACACGATGCGCGCCGCGTTGACCCCCCTGGTGACGATGGC
GGGACTCGACTTCGCCGGCCTGATGGGCGGCGCGATCATCACCGAGTCGGTCTTCAACTTCAACGGGCTCGGTAAGTTGG
TCGTCGACGCGAACAACACCTACGACCTGCCGACGCTGATCGGCCTGGTGCTGCTGCTCGGGGCGTTCGTGATCATCGCC
AACATCATCGTCGACGTGCTGTACGCCGTCATCGACCCGCGCGTCCGCGTCGGCTGA

Upstream 100 bases:

>100_bases
TGGGGGCCTCGTCGAGGGGCCCTCACCCTCACCGCCGTCCAGGGTGCGATGCTGAGACCCAGCACGTCCCCACCGACACG
ACCCGAGGTGGTCCCTCCCG

Downstream 100 bases:

>100_bases
GGGGAACAAGGTGAGCTTTCTTTCCGTCCGTGACCTCAAGGTCCACTTCCCGACGGTCGACGGCGTCGTCAAGGCCACCG
ACGGCCTGTCGTTCGACCTC

Product: binding-protein-dependent transport systems inner membrane component

Products: ADP; phosphate; dipeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 338; Mature: 338

Protein sequence:

>338_residues
MFAYIVRRLFIGVILLIVMSLVTFILFFASPVDPARFACGKNCSLAQIEQTRKALGYDDGPLTQWTSFLEGVVVGRDYPD
DPELRKNAPELIADCAAPCLGYSRVNQVTVASEIKEAFPVSLSLAILAFIMWIAGGVLFGVIAAITKGTVIDRGIVAASL
VFYAFPTFFIGLFLLKFIAIKWGLVDVPSYVSIAEGGVGTWLSNLFLPALTLALFFMAGYVRMTRAFVLESMSEDYIRTA
RAKGLKRGRVLYKHTMRAALTPLVTMAGLDFAGLMGGAIITESVFNFNGLGKLVVDANNTYDLPTLIGLVLLLGAFVIIA
NIIVDVLYAVIDPRVRVG

Sequences:

>Translated_338_residues
MFAYIVRRLFIGVILLIVMSLVTFILFFASPVDPARFACGKNCSLAQIEQTRKALGYDDGPLTQWTSFLEGVVVGRDYPD
DPELRKNAPELIADCAAPCLGYSRVNQVTVASEIKEAFPVSLSLAILAFIMWIAGGVLFGVIAAITKGTVIDRGIVAASL
VFYAFPTFFIGLFLLKFIAIKWGLVDVPSYVSIAEGGVGTWLSNLFLPALTLALFFMAGYVRMTRAFVLESMSEDYIRTA
RAKGLKRGRVLYKHTMRAALTPLVTMAGLDFAGLMGGAIITESVFNFNGLGKLVVDANNTYDLPTLIGLVLLLGAFVIIA
NIIVDVLYAVIDPRVRVG
>Mature_338_residues
MFAYIVRRLFIGVILLIVMSLVTFILFFASPVDPARFACGKNCSLAQIEQTRKALGYDDGPLTQWTSFLEGVVVGRDYPD
DPELRKNAPELIADCAAPCLGYSRVNQVTVASEIKEAFPVSLSLAILAFIMWIAGGVLFGVIAAITKGTVIDRGIVAASL
VFYAFPTFFIGLFLLKFIAIKWGLVDVPSYVSIAEGGVGTWLSNLFLPALTLALFFMAGYVRMTRAFVLESMSEDYIRTA
RAKGLKRGRVLYKHTMRAALTPLVTMAGLDFAGLMGGAIITESVFNFNGLGKLVVDANNTYDLPTLIGLVLLLGAFVIIA
NIIVDVLYAVIDPRVRVG

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789965, Length=359, Percent_Identity=32.3119777158774, Blast_Score=180, Evalue=1e-46,
Organism=Escherichia coli, GI1787053, Length=336, Percent_Identity=33.3333333333333, Blast_Score=171, Evalue=9e-44,
Organism=Escherichia coli, GI1787497, Length=338, Percent_Identity=28.4023668639053, Blast_Score=135, Evalue=3e-33,
Organism=Escherichia coli, GI1787550, Length=255, Percent_Identity=29.4117647058824, Blast_Score=118, Evalue=5e-28,
Organism=Escherichia coli, GI1787761, Length=358, Percent_Identity=29.0502793296089, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI1789888, Length=341, Percent_Identity=23.7536656891496, Blast_Score=101, Evalue=7e-23,
Organism=Escherichia coli, GI1788504, Length=278, Percent_Identity=24.4604316546763, Blast_Score=91, Evalue=1e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 36717; Mature: 36717

Theoretical pI: Translated: 8.57; Mature: 8.57

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFAYIVRRLFIGVILLIVMSLVTFILFFASPVDPARFACGKNCSLAQIEQTRKALGYDDG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCHHHHHHHHHHCCCCCC
PLTQWTSFLEGVVVGRDYPDDPELRKNAPELIADCAAPCLGYSRVNQVTVASEIKEAFPV
CHHHHHHHHHHHHCCCCCCCCCHHHCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCH
SLSLAILAFIMWIAGGVLFGVIAAITKGTVIDRGIVAASLVFYAFPTFFIGLFLLKFIAI
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KWGLVDVPSYVSIAEGGVGTWLSNLFLPALTLALFFMAGYVRMTRAFVLESMSEDYIRTA
HHCHHCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RAKGLKRGRVLYKHTMRAALTPLVTMAGLDFAGLMGGAIITESVFNFNGLGKLVVDANNT
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCC
YDLPTLIGLVLLLGAFVIIANIIVDVLYAVIDPRVRVG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MFAYIVRRLFIGVILLIVMSLVTFILFFASPVDPARFACGKNCSLAQIEQTRKALGYDDG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCHHHHHHHHHHCCCCCC
PLTQWTSFLEGVVVGRDYPDDPELRKNAPELIADCAAPCLGYSRVNQVTVASEIKEAFPV
CHHHHHHHHHHHHCCCCCCCCCHHHCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCH
SLSLAILAFIMWIAGGVLFGVIAAITKGTVIDRGIVAASLVFYAFPTFFIGLFLLKFIAI
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KWGLVDVPSYVSIAEGGVGTWLSNLFLPALTLALFFMAGYVRMTRAFVLESMSEDYIRTA
HHCHHCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RAKGLKRGRVLYKHTMRAALTPLVTMAGLDFAGLMGGAIITESVFNFNGLGKLVVDANNT
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCC
YDLPTLIGLVLLLGAFVIIANIIVDVLYAVIDPRVRVG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; dipeptides [Periplasm]; H2O [C]

Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800; 8550458 [H]