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The map label for this gene is cph1 [H]

Identifier: 119716583

GI number: 119716583

Start: 2510784

End: 2512790

Strand: Direct

Name: cph1 [H]

Synonym: Noca_2356

Alternate gene names: 119716583

Gene position: 2510784-2512790 (Clockwise)

Preceding gene: 119716582

Following gene: 119716584

Centisome position: 50.36

GC content: 73.29

Gene sequence:

>2007_bases
ATGCCGGGGGACCGGAGCGAGCCGCGCTCGCGCGCACATCCCGGCACGGCTTACGGGCTGGCCGGGTGCCTCGTGCTGCT
CGCGGTGCTGGCCCGCGAGCCTGCGCTCGACAGCCCGGGCTTCGCGACGGTCTGGCCGGCCGGCGGCCTCGCGGTCCTGT
GGTTCGTGCTGCGAGACGCGCGCCTGCTCAGCTTGGACACGCTCCTCCTTGCCGCCGCCGCGGCCACCGGCAACGCCGTC
CTGGGGGCTGATCCCCGCCTCAACGCGGTCTTCGTCGGCGTCACGGTCACGCAGACGCTGCTCGCGGTCTGGCTGCTGCG
CCGCTGGAGCCCGGAGCTGTGGGGCTGCGGGGGTGACCGGCCGCTCGACCGCCCCCGGATGCTGCCGCGCTACGGGGGAG
CGCTGGCCGTGGCCATGGCCGTCGGCGCGCTGCTCGGCACGGCCGGAGCGGCGGCCGTCAGCGGGGAGTACGAGCCGCTG
TCGGGAGCGCTCTACTTCGGTCGCACGCTGGTCAGCAGCCTGATCGTCGTGACACTGGGGATCCTGGTCGGGCAGTGGGT
CTCGCGGCCCCGGCCGCGGGGCTCGCTGGTCGGCTACGGGCCGGTCGTGGAGCTGCTCGCTGCCTCGGGCTTCACCGCGG
CCATGTACGGCTTGGCGTTCGCCTTCGACGACCTGCCCCTCGTGTTCCCGCTGCTCGCCGCCACGGTGTGGTTCGGACTG
CGGTTCAGCACCCTCGCCAGCGCGGCGCACTCCTTCGTGGTCGGAGTCGCCACGCAGGCGTTGACGATGACCGGCTACGG
CCCGTTCGCGGCCGTGGAGCGGGCCGACGTCGGCACCCTGCTCGCCGAGTTCTACGTCGCGACCATCGTGGTCACCGGCC
TCGCTCTCTCGACCGGTCGGGACGAGCGGCAGGCGCTCTCGGCCGAGCTGCTGCGCACGCAGGAGGAGACGCTGTACCAG
GCCAGCCTGCGCGAGGCCGTGCTCGGCTCGATGAACGAGGGCCTGTTCGTCCTCGACGAGGCCGGCAACCTGTTGGTGCA
CAACGCCGCGGCGGCCGAGATCTTCGGGCTCGCCTACGACGAGGTCGACTGGGAGGTCCTGGCCGCGCGCTCCCGGCAGT
GGGCCGACGGCAGTGCCGTCGGCACCCCGGAACGCCCGTCGATGCGCGCCCTGGCCGGCGAGACCGTGCGCGACGCCGAG
CAGATGATCACTCGTACGGACGGCACGCAGCGGGTCGTCTCGGTCTCCGCGGTCCCGCTGCCGCGCGACGAGGTGCGGCA
CCGGGCCCGGGCGCTGGTCATCTTCCGCGACATCTCCAGCGAGCACGCCCGGCGCGCGGAGCTGGCCGCGTTCGCCGGGG
TCGTCGCCCACGACCTGCGCAACCCGCTGGCCGCGATCGACGGCTGGACCGAGATGATCGCCGACGAGCTGGACTCCGGG
AACCTCAGCGCCGACCTGGCGCGCGACTTCGTCTCGCGGGTCCGGTCCTCCTCGCGCCGGATGCGGGAGCTGATCCGGGA
CCTGCTCGCGCACGCGACGGCCAGCCAGCGCGACCTCGAGGTCGAGCGGGTCGACCTCGCTGCGCTCGTCGCCGAGGTCG
CGACCGCACGCCACGCCGAGTCCCGGGTGCGGGTCGACCCGCTGCCCGTCGTGCTGGCCGACCCGGTGCTGGTCCGCCAG
GTGCTGGACAACCTGATCGGCAACGCGCTGAAGTACGTCGCCGCCGGGGTCGAGCCGGAGATCGTCGTCCAGGGCTGCCG
CACCGACTCGCGGATGGTGACCGTGCAGGTCGCCGACAACGGGATCGGCATCCCGGCAGGAGAGCACGAGCGGGTCTTCG
ACGAGTTCCACCGGGCGCACTACCGCGACTACGAGGGGAGCGGTCTGGGCCTCTCGATCGTGCGCCGGATCATCAGCCGG
CACGACGGCACGATCGTGGCCCGTGCGAACCCGAGCGGTCAGGGCTCGATGTTCGAGTTCACCCTCCCGGCGTACGACGG
AGAGTGA

Upstream 100 bases:

>100_bases
AACGACGACGACTGACGCCGCGCCGTCTGCGAGACCTGCTGATGCCACGATCGCCCGCGACCACTAGCCTCTCCTCGGGG
GTACATGGGTGGGGGTAGGG

Downstream 100 bases:

>100_bases
TCCCGGTTCATCCCCACGGGTGAGCCGGAGCGGTGCCCGGTACGGCGATCCTGGCCCGGTCGGGCAGCCCGTTCGCCGTC
CTCGAGCCACGGGGGTCCGG

Product: PAS sensor protein

Products: NA

Alternate protein names: Bacteriophytochrome cph1; Light-regulated histidine kinase 1 [H]

Number of amino acids: Translated: 668; Mature: 667

Protein sequence:

>668_residues
MPGDRSEPRSRAHPGTAYGLAGCLVLLAVLAREPALDSPGFATVWPAGGLAVLWFVLRDARLLSLDTLLLAAAAATGNAV
LGADPRLNAVFVGVTVTQTLLAVWLLRRWSPELWGCGGDRPLDRPRMLPRYGGALAVAMAVGALLGTAGAAAVSGEYEPL
SGALYFGRTLVSSLIVVTLGILVGQWVSRPRPRGSLVGYGPVVELLAASGFTAAMYGLAFAFDDLPLVFPLLAATVWFGL
RFSTLASAAHSFVVGVATQALTMTGYGPFAAVERADVGTLLAEFYVATIVVTGLALSTGRDERQALSAELLRTQEETLYQ
ASLREAVLGSMNEGLFVLDEAGNLLVHNAAAAEIFGLAYDEVDWEVLAARSRQWADGSAVGTPERPSMRALAGETVRDAE
QMITRTDGTQRVVSVSAVPLPRDEVRHRARALVIFRDISSEHARRAELAAFAGVVAHDLRNPLAAIDGWTEMIADELDSG
NLSADLARDFVSRVRSSSRRMRELIRDLLAHATASQRDLEVERVDLAALVAEVATARHAESRVRVDPLPVVLADPVLVRQ
VLDNLIGNALKYVAAGVEPEIVVQGCRTDSRMVTVQVADNGIGIPAGEHERVFDEFHRAHYRDYEGSGLGLSIVRRIISR
HDGTIVARANPSGQGSMFEFTLPAYDGE

Sequences:

>Translated_668_residues
MPGDRSEPRSRAHPGTAYGLAGCLVLLAVLAREPALDSPGFATVWPAGGLAVLWFVLRDARLLSLDTLLLAAAAATGNAV
LGADPRLNAVFVGVTVTQTLLAVWLLRRWSPELWGCGGDRPLDRPRMLPRYGGALAVAMAVGALLGTAGAAAVSGEYEPL
SGALYFGRTLVSSLIVVTLGILVGQWVSRPRPRGSLVGYGPVVELLAASGFTAAMYGLAFAFDDLPLVFPLLAATVWFGL
RFSTLASAAHSFVVGVATQALTMTGYGPFAAVERADVGTLLAEFYVATIVVTGLALSTGRDERQALSAELLRTQEETLYQ
ASLREAVLGSMNEGLFVLDEAGNLLVHNAAAAEIFGLAYDEVDWEVLAARSRQWADGSAVGTPERPSMRALAGETVRDAE
QMITRTDGTQRVVSVSAVPLPRDEVRHRARALVIFRDISSEHARRAELAAFAGVVAHDLRNPLAAIDGWTEMIADELDSG
NLSADLARDFVSRVRSSSRRMRELIRDLLAHATASQRDLEVERVDLAALVAEVATARHAESRVRVDPLPVVLADPVLVRQ
VLDNLIGNALKYVAAGVEPEIVVQGCRTDSRMVTVQVADNGIGIPAGEHERVFDEFHRAHYRDYEGSGLGLSIVRRIISR
HDGTIVARANPSGQGSMFEFTLPAYDGE
>Mature_667_residues
PGDRSEPRSRAHPGTAYGLAGCLVLLAVLAREPALDSPGFATVWPAGGLAVLWFVLRDARLLSLDTLLLAAAAATGNAVL
GADPRLNAVFVGVTVTQTLLAVWLLRRWSPELWGCGGDRPLDRPRMLPRYGGALAVAMAVGALLGTAGAAAVSGEYEPLS
GALYFGRTLVSSLIVVTLGILVGQWVSRPRPRGSLVGYGPVVELLAASGFTAAMYGLAFAFDDLPLVFPLLAATVWFGLR
FSTLASAAHSFVVGVATQALTMTGYGPFAAVERADVGTLLAEFYVATIVVTGLALSTGRDERQALSAELLRTQEETLYQA
SLREAVLGSMNEGLFVLDEAGNLLVHNAAAAEIFGLAYDEVDWEVLAARSRQWADGSAVGTPERPSMRALAGETVRDAEQ
MITRTDGTQRVVSVSAVPLPRDEVRHRARALVIFRDISSEHARRAELAAFAGVVAHDLRNPLAAIDGWTEMIADELDSGN
LSADLARDFVSRVRSSSRRMRELIRDLLAHATASQRDLEVERVDLAALVAEVATARHAESRVRVDPLPVVLADPVLVRQV
LDNLIGNALKYVAAGVEPEIVVQGCRTDSRMVTVQVADNGIGIPAGEHERVFDEFHRAHYRDYEGSGLGLSIVRRIISRH
DGTIVARANPSGQGSMFEFTLPAYDGE

Specific function: Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region. Has also a slight blue shift

COG id: NA

COG function: NA

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI145693157, Length=268, Percent_Identity=30.9701492537313, Blast_Score=102, Evalue=8e-23,
Organism=Escherichia coli, GI87082128, Length=225, Percent_Identity=34.2222222222222, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI1786783, Length=228, Percent_Identity=31.140350877193, Blast_Score=88, Evalue=2e-18,
Organism=Escherichia coli, GI1786912, Length=230, Percent_Identity=32.6086956521739, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1788549, Length=250, Percent_Identity=30.4, Blast_Score=87, Evalue=3e-18,
Organism=Escherichia coli, GI1790436, Length=240, Percent_Identity=30.4166666666667, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1789149, Length=243, Percent_Identity=27.1604938271605, Blast_Score=84, Evalue=3e-17,
Organism=Escherichia coli, GI48994928, Length=288, Percent_Identity=25.6944444444444, Blast_Score=83, Evalue=5e-17,
Organism=Escherichia coli, GI1790861, Length=255, Percent_Identity=31.3725490196078, Blast_Score=83, Evalue=7e-17,
Organism=Escherichia coli, GI1786600, Length=345, Percent_Identity=22.8985507246377, Blast_Score=79, Evalue=1e-15,
Organism=Escherichia coli, GI1788713, Length=367, Percent_Identity=22.8882833787466, Blast_Score=73, Evalue=6e-14,
Organism=Escherichia coli, GI87081816, Length=237, Percent_Identity=27.4261603375527, Blast_Score=70, Evalue=4e-13,
Organism=Escherichia coli, GI1790346, Length=223, Percent_Identity=30.0448430493274, Blast_Score=70, Evalue=6e-13,
Organism=Escherichia coli, GI1789808, Length=203, Percent_Identity=27.5862068965517, Blast_Score=67, Evalue=4e-12,
Organism=Escherichia coli, GI1787894, Length=225, Percent_Identity=30.6666666666667, Blast_Score=67, Evalue=4e-12,
Organism=Escherichia coli, GI1790300, Length=351, Percent_Identity=26.4957264957265, Blast_Score=65, Evalue=2e-11,
Organism=Escherichia coli, GI1788393, Length=264, Percent_Identity=25.3787878787879, Blast_Score=65, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003018
- InterPro:   IPR000014
- InterPro:   IPR013654
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082 [H]

Pfam domain/function: PF01590 GAF; PF02518 HATPase_c; PF00512 HisKA; PF08446 PAS_2; PF00360 Phytochrome [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 71422; Mature: 71291

Theoretical pI: Translated: 5.30; Mature: 5.30

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50112 PAS ; PS50109 HIS_KIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPGDRSEPRSRAHPGTAYGLAGCLVLLAVLAREPALDSPGFATVWPAGGLAVLWFVLRDA
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCHHHHHHHHHHCC
RLLSLDTLLLAAAAATGNAVLGADPRLNAVFVGVTVTQTLLAVWLLRRWSPELWGCGGDR
HHHHHHHHHHHHHHCCCCEEECCCCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCC
PLDRPRMLPRYGGALAVAMAVGALLGTAGAAAVSGEYEPLSGALYFGRTLVSSLIVVTLG
CCCCCCCCHHCCHHHHHHHHHHHHHHCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH
ILVGQWVSRPRPRGSLVGYGPVVELLAASGFTAAMYGLAFAFDDLPLVFPLLAATVWFGL
HHHHHHHCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
RFSTLASAAHSFVVGVATQALTMTGYGPFAAVERADVGTLLAEFYVATIVVTGLALSTGR
HHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
DERQALSAELLRTQEETLYQASLREAVLGSMNEGLFVLDEAGNLLVHNAAAAEIFGLAYD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCEEEECCHHHHHHHHHHH
EVDWEVLAARSRQWADGSAVGTPERPSMRALAGETVRDAEQMITRTDGTQRVVSVSAVPL
HCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHCHHHHHHHHHHHHCCCCCEEEEEECCCC
PRDEVRHRARALVIFRDISSEHARRAELAAFAGVVAHDLRNPLAAIDGWTEMIADELDSG
CHHHHHHHHHEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCC
NLSADLARDFVSRVRSSSRRMRELIRDLLAHATASQRDLEVERVDLAALVAEVATARHAE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
SRVRVDPLPVVLADPVLVRQVLDNLIGNALKYVAAGVEPEIVVQGCRTDSRMVTVQVADN
CCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHCCCCHHEEEECCCCCCEEEEEEECCC
GIGIPAGEHERVFDEFHRAHYRDYEGSGLGLSIVRRIISRHDGTIVARANPSGQGSMFEF
CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCEEEE
TLPAYDGE
ECCCCCCC
>Mature Secondary Structure 
PGDRSEPRSRAHPGTAYGLAGCLVLLAVLAREPALDSPGFATVWPAGGLAVLWFVLRDA
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCHHHHHHHHHHCC
RLLSLDTLLLAAAAATGNAVLGADPRLNAVFVGVTVTQTLLAVWLLRRWSPELWGCGGDR
HHHHHHHHHHHHHHCCCCEEECCCCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCC
PLDRPRMLPRYGGALAVAMAVGALLGTAGAAAVSGEYEPLSGALYFGRTLVSSLIVVTLG
CCCCCCCCHHCCHHHHHHHHHHHHHHCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH
ILVGQWVSRPRPRGSLVGYGPVVELLAASGFTAAMYGLAFAFDDLPLVFPLLAATVWFGL
HHHHHHHCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
RFSTLASAAHSFVVGVATQALTMTGYGPFAAVERADVGTLLAEFYVATIVVTGLALSTGR
HHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
DERQALSAELLRTQEETLYQASLREAVLGSMNEGLFVLDEAGNLLVHNAAAAEIFGLAYD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCEEEECCHHHHHHHHHHH
EVDWEVLAARSRQWADGSAVGTPERPSMRALAGETVRDAEQMITRTDGTQRVVSVSAVPL
HCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHCHHHHHHHHHHHHCCCCCEEEEEECCCC
PRDEVRHRARALVIFRDISSEHARRAELAAFAGVVAHDLRNPLAAIDGWTEMIADELDSG
CHHHHHHHHHEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCC
NLSADLARDFVSRVRSSSRRMRELIRDLLAHATASQRDLEVERVDLAALVAEVATARHAE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
SRVRVDPLPVVLADPVLVRQVLDNLIGNALKYVAAGVEPEIVVQGCRTDSRMVTVQVADN
CCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHCCCCHHEEEECCCCCCEEEEEEECCC
GIGIPAGEHERVFDEFHRAHYRDYEGSGLGLSIVRRIISRHDGTIVARANPSGQGSMFEF
CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCEEEE
TLPAYDGE
ECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 9109482; 9278513; 10828948 [H]