| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
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The map label for this gene is yhiH [C]
Identifier: 119716440
GI number: 119716440
Start: 2359488
End: 2360426
Strand: Direct
Name: yhiH [C]
Synonym: Noca_2211
Alternate gene names: 119716440
Gene position: 2359488-2360426 (Clockwise)
Preceding gene: 119716439
Following gene: 119716441
Centisome position: 47.32
GC content: 70.82
Gene sequence:
>939_bases ATGACATCTACAACCACGGCTGAAGCCATCACGGTGGCCGGCCTGCGCAAGAGCTTCGGCCCGACCCGGGCTCTGGATGG CCTGGACCTGGCCGTCGGCGCGGGTGAGGTGCACGGCTTCCTCGGCCTCAACGGGGCCGGGAAGACCACCACGATCCGGA TCCTGCTCGGCCTGATGCGCGCCGACGCAGGCACGACGCGACTGCTCGGGGGCGACCCCTGGGGGGACGCCACCCGGCTG CACCGCCGGATCGCCTACGTGCCCGGCGATGTCGCGTTGTGGCCCGGCCTGACCGGCGGTGAGGTGATCGACCTGCTCGG CCGGATGCGCGGCGGCCTGGACGGGAAACGCCGCGACGAACTGCTCGAGCGGTTCGACCTCGACCCCCGCAAGAGGGGCC GCGCCTACTCCAAGGGCAACCGGCAGAAGGTCCCCTTGGTCGCCGCGCTGGCCTCCGACGCCGAACTGCTGCTCCTCGAC GAGCCCACCTCCGGACTGGACCCGTTGATGGAGGAGACCTTCCGTCAGGTCATCGCAGAGGACCGTCACCGGCTCGGCCG GACGGTGCTGCTGTCGAGCCACATTCTGGCCGAGGTCGAGGTGCTGTGTGACCGGGTCACCATCATCCGTGACGGCCGGG CCGTGGAATCCGGCACTCTCACCGAGCTTCGCCATCTGACCCGCACCTCGGTCACCGCCGAAGTGACCGGCCCGGCGCAG GACTTGGGCACCCTCGCCGGTGTCCACGACCTGCACATCGACGGCACCCGGGTCCGGTTCGGGGTCGACGGCGCCGGGCT CCCGGACGTGTTGAGCTTCCTCGGATCCGCGGGGGTCCGCTACATCGTGTGCCGGCCGCCCAGCCTGGAGGAGCTGTTCC TGCGCCACTACGAAACCCAGCCCGCCACCACAGCGTCCGGGCCCGGCGGCACCAGATGA
Upstream 100 bases:
>100_bases GCGACTACCTGCCCGGCGACGCCCGGCGCAGCTGAGCGGCTCGGTCCCTCGGCGTGTGCACGCCGAGCCGCCGAGCAGCC CGTTGAAGGGAGAAGCGCAG
Downstream 100 bases:
>100_bases ACGCCCCGGCCGATTCCCTGGTCGGTACCGGCTCCCTGGTCCGGCTGATCCTGCGCCGGGACCGCTGGCTCTTGGCGCTG GGGATCCTGCTCCTGGCCGG
Product: ABC transporter-like protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 312; Mature: 311
Protein sequence:
>312_residues MTSTTTAEAITVAGLRKSFGPTRALDGLDLAVGAGEVHGFLGLNGAGKTTTIRILLGLMRADAGTTRLLGGDPWGDATRL HRRIAYVPGDVALWPGLTGGEVIDLLGRMRGGLDGKRRDELLERFDLDPRKRGRAYSKGNRQKVPLVAALASDAELLLLD EPTSGLDPLMEETFRQVIAEDRHRLGRTVLLSSHILAEVEVLCDRVTIIRDGRAVESGTLTELRHLTRTSVTAEVTGPAQ DLGTLAGVHDLHIDGTRVRFGVDGAGLPDVLSFLGSAGVRYIVCRPPSLEELFLRHYETQPATTASGPGGTR
Sequences:
>Translated_312_residues MTSTTTAEAITVAGLRKSFGPTRALDGLDLAVGAGEVHGFLGLNGAGKTTTIRILLGLMRADAGTTRLLGGDPWGDATRL HRRIAYVPGDVALWPGLTGGEVIDLLGRMRGGLDGKRRDELLERFDLDPRKRGRAYSKGNRQKVPLVAALASDAELLLLD EPTSGLDPLMEETFRQVIAEDRHRLGRTVLLSSHILAEVEVLCDRVTIIRDGRAVESGTLTELRHLTRTSVTAEVTGPAQ DLGTLAGVHDLHIDGTRVRFGVDGAGLPDVLSFLGSAGVRYIVCRPPSLEELFLRHYETQPATTASGPGGTR >Mature_311_residues TSTTTAEAITVAGLRKSFGPTRALDGLDLAVGAGEVHGFLGLNGAGKTTTIRILLGLMRADAGTTRLLGGDPWGDATRLH RRIAYVPGDVALWPGLTGGEVIDLLGRMRGGLDGKRRDELLERFDLDPRKRGRAYSKGNRQKVPLVAALASDAELLLLDE PTSGLDPLMEETFRQVIAEDRHRLGRTVLLSSHILAEVEVLCDRVTIIRDGRAVESGTLTELRHLTRTSVTAEVTGPAQD LGTLAGVHDLHIDGTRVRFGVDGAGLPDVLSFLGSAGVRYIVCRPPSLEELFLRHYETQPATTASGPGGTR
Specific function: Unknown
COG id: COG1131
COG function: function code V; ABC-type multidrug transport system, ATPase component
Gene ontology:
Cell location: Integral Membrane Protein. Inner Membrane [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI116734710, Length=312, Percent_Identity=30.7692307692308, Blast_Score=112, Evalue=4e-25, Organism=Homo sapiens, GI21536376, Length=214, Percent_Identity=32.2429906542056, Blast_Score=107, Evalue=2e-23, Organism=Homo sapiens, GI6005701, Length=221, Percent_Identity=32.1266968325792, Blast_Score=106, Evalue=3e-23, Organism=Homo sapiens, GI150417984, Length=225, Percent_Identity=34.2222222222222, Blast_Score=105, Evalue=4e-23, Organism=Homo sapiens, GI27477115, Length=209, Percent_Identity=32.0574162679426, Blast_Score=105, Evalue=8e-23, Organism=Homo sapiens, GI27436953, Length=222, Percent_Identity=31.981981981982, Blast_Score=102, Evalue=4e-22, Organism=Homo sapiens, GI45446740, Length=226, Percent_Identity=32.7433628318584, Blast_Score=102, Evalue=5e-22, Organism=Homo sapiens, GI105990541, Length=230, Percent_Identity=33.0434782608696, Blast_Score=102, Evalue=5e-22, Organism=Homo sapiens, GI47078218, Length=226, Percent_Identity=32.7433628318584, Blast_Score=102, Evalue=6e-22, Organism=Homo sapiens, GI27881501, Length=211, Percent_Identity=32.2274881516588, Blast_Score=98, Evalue=8e-21, Organism=Homo sapiens, GI30795238, Length=211, Percent_Identity=32.2274881516588, Blast_Score=98, Evalue=8e-21, Organism=Homo sapiens, GI153792144, Length=226, Percent_Identity=29.2035398230088, Blast_Score=95, Evalue=7e-20, Organism=Homo sapiens, GI31657092, Length=216, Percent_Identity=30.0925925925926, Blast_Score=94, Evalue=2e-19, Organism=Homo sapiens, GI27262624, Length=206, Percent_Identity=28.6407766990291, Blast_Score=86, Evalue=4e-17, Organism=Homo sapiens, GI27262626, Length=206, Percent_Identity=28.6407766990291, Blast_Score=86, Evalue=4e-17, Organism=Homo sapiens, GI9961250, Length=218, Percent_Identity=30.2752293577982, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI4505771, Length=218, Percent_Identity=30.2752293577982, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI9961252, Length=218, Percent_Identity=30.2752293577982, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI42741659, Length=217, Percent_Identity=29.4930875576037, Blast_Score=71, Evalue=1e-12, Organism=Escherichia coli, GI48994943, Length=222, Percent_Identity=34.2342342342342, Blast_Score=114, Evalue=8e-27, Organism=Escherichia coli, GI1786319, Length=297, Percent_Identity=29.6296296296296, Blast_Score=111, Evalue=5e-26, Organism=Escherichia coli, GI87081782, Length=247, Percent_Identity=29.5546558704453, Blast_Score=103, Evalue=1e-23, Organism=Escherichia coli, GI1789593, Length=224, Percent_Identity=30.8035714285714, Blast_Score=100, Evalue=1e-22, Organism=Escherichia coli, GI48995001, Length=237, Percent_Identity=31.6455696202532, Blast_Score=97, Evalue=1e-21, Organism=Escherichia coli, GI1787370, Length=286, Percent_Identity=25.8741258741259, Blast_Score=96, Evalue=4e-21, Organism=Escherichia coli, GI1787792, Length=231, Percent_Identity=32.4675324675325, Blast_Score=95, Evalue=5e-21, Organism=Escherichia coli, GI1788210, Length=252, Percent_Identity=30.1587301587302, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI1787712, Length=237, Percent_Identity=28.6919831223629, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI1790190, Length=228, Percent_Identity=32.0175438596491, Blast_Score=92, Evalue=6e-20, Organism=Escherichia coli, GI1788450, Length=218, Percent_Identity=28.8990825688073, Blast_Score=90, Evalue=2e-19, Organism=Escherichia coli, GI1788761, Length=252, Percent_Identity=28.5714285714286, Blast_Score=87, Evalue=2e-18, Organism=Escherichia coli, GI1786398, Length=227, Percent_Identity=30.3964757709251, Blast_Score=85, Evalue=7e-18, Organism=Escherichia coli, GI87081791, Length=233, Percent_Identity=27.4678111587983, Blast_Score=85, Evalue=8e-18, Organism=Escherichia coli, GI1787029, Length=222, Percent_Identity=30.6306306306306, Blast_Score=84, Evalue=9e-18, Organism=Escherichia coli, GI1790467, Length=222, Percent_Identity=27.027027027027, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI87081709, Length=293, Percent_Identity=26.6211604095563, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI1788225, Length=233, Percent_Identity=31.7596566523605, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1787500, Length=220, Percent_Identity=29.0909090909091, Blast_Score=79, Evalue=5e-16, Organism=Escherichia coli, GI1787089, Length=226, Percent_Identity=30.9734513274336, Blast_Score=78, Evalue=9e-16, Organism=Escherichia coli, GI1789032, Length=207, Percent_Identity=31.4009661835749, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI87082267, Length=248, Percent_Identity=29.4354838709677, Blast_Score=76, Evalue=3e-15, Organism=Escherichia coli, GI1789991, Length=218, Percent_Identity=30.2752293577982, Blast_Score=75, Evalue=5e-15, Organism=Escherichia coli, GI1790739, Length=238, Percent_Identity=28.1512605042017, Blast_Score=75, Evalue=6e-15, Organism=Escherichia coli, GI1788506, Length=210, Percent_Identity=29.0476190476191, Blast_Score=75, Evalue=6e-15, Organism=Escherichia coli, GI1789891, Length=214, Percent_Identity=30.3738317757009, Blast_Score=75, Evalue=7e-15, Organism=Escherichia coli, GI1788897, Length=225, Percent_Identity=29.7777777777778, Blast_Score=74, Evalue=8e-15, Organism=Escherichia coli, GI87082268, Length=215, Percent_Identity=30.6976744186047, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI48994883, Length=233, Percent_Identity=26.6094420600858, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI1786345, Length=212, Percent_Identity=28.7735849056604, Blast_Score=72, Evalue=5e-14, Organism=Escherichia coli, GI1787758, Length=209, Percent_Identity=27.7511961722488, Blast_Score=72, Evalue=5e-14, Organism=Escherichia coli, GI1788165, Length=210, Percent_Identity=32.3809523809524, Blast_Score=72, Evalue=5e-14, Organism=Escherichia coli, GI1787105, Length=214, Percent_Identity=31.3084112149533, Blast_Score=71, Evalue=1e-13, Organism=Escherichia coli, GI1789963, Length=247, Percent_Identity=26.3157894736842, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1789962, Length=274, Percent_Identity=25.1824817518248, Blast_Score=66, Evalue=4e-12, Organism=Escherichia coli, GI1787164, Length=199, Percent_Identity=31.1557788944724, Blast_Score=65, Evalue=5e-12, Organism=Escherichia coli, GI1790525, Length=210, Percent_Identity=26.6666666666667, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1786563, Length=209, Percent_Identity=24.4019138755981, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI87081834, Length=203, Percent_Identity=28.0788177339901, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI145693107, Length=209, Percent_Identity=30.622009569378, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI1787112, Length=217, Percent_Identity=30.8755760368664, Blast_Score=62, Evalue=3e-11, Organism=Escherichia coli, GI2367384, Length=254, Percent_Identity=27.5590551181102, Blast_Score=62, Evalue=7e-11, Organism=Escherichia coli, GI1788644, Length=243, Percent_Identity=28.8065843621399, Blast_Score=61, Evalue=9e-11, Organism=Escherichia coli, GI1786703, Length=221, Percent_Identity=27.6018099547511, Blast_Score=61, Evalue=9e-11, Organism=Caenorhabditis elegans, GI71983523, Length=231, Percent_Identity=34.6320346320346, Blast_Score=116, Evalue=2e-26, Organism=Caenorhabditis elegans, GI71983516, Length=231, Percent_Identity=34.6320346320346, Blast_Score=116, Evalue=2e-26, Organism=Caenorhabditis elegans, GI71983510, Length=231, Percent_Identity=34.6320346320346, Blast_Score=116, Evalue=2e-26, Organism=Caenorhabditis elegans, GI17510237, Length=222, Percent_Identity=32.4324324324324, Blast_Score=107, Evalue=6e-24, Organism=Caenorhabditis elegans, GI115533608, Length=268, Percent_Identity=32.4626865671642, Blast_Score=107, Evalue=9e-24, Organism=Caenorhabditis elegans, GI17565586, Length=197, Percent_Identity=29.9492385786802, Blast_Score=94, Evalue=1e-19, Organism=Caenorhabditis elegans, GI17569143, Length=213, Percent_Identity=29.1079812206573, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17533971, Length=218, Percent_Identity=26.605504587156, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI115535101, Length=202, Percent_Identity=30.1980198019802, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI17567269, Length=211, Percent_Identity=27.9620853080569, Blast_Score=65, Evalue=3e-11, Organism=Drosophila melanogaster, GI24666092, Length=309, Percent_Identity=29.7734627831715, Blast_Score=112, Evalue=5e-25, Organism=Drosophila melanogaster, GI28574150, Length=266, Percent_Identity=29.6992481203008, Blast_Score=111, Evalue=7e-25, Organism=Drosophila melanogaster, GI116007328, Length=266, Percent_Identity=29.6992481203008, Blast_Score=111, Evalue=7e-25, Organism=Drosophila melanogaster, GI24643674, Length=214, Percent_Identity=30.8411214953271, Blast_Score=106, Evalue=2e-23, Organism=Drosophila melanogaster, GI24648314, Length=232, Percent_Identity=29.3103448275862, Blast_Score=104, Evalue=6e-23, Organism=Drosophila melanogaster, GI221512771, Length=229, Percent_Identity=30.5676855895196, Blast_Score=103, Evalue=1e-22, Organism=Drosophila melanogaster, GI221500365, Length=251, Percent_Identity=32.6693227091633, Blast_Score=102, Evalue=2e-22, Organism=Drosophila melanogaster, GI116007184, Length=251, Percent_Identity=32.6693227091633, Blast_Score=102, Evalue=3e-22, Organism=Drosophila melanogaster, GI24650855, Length=204, Percent_Identity=31.3725490196078, Blast_Score=96, Evalue=2e-20, Organism=Drosophila melanogaster, GI24650853, Length=204, Percent_Identity=31.3725490196078, Blast_Score=96, Evalue=3e-20, Organism=Drosophila melanogaster, GI281362751, Length=204, Percent_Identity=31.3725490196078, Blast_Score=96, Evalue=4e-20, Organism=Drosophila melanogaster, GI24582014, Length=209, Percent_Identity=29.1866028708134, Blast_Score=95, Evalue=6e-20, Organism=Drosophila melanogaster, GI24582012, Length=209, Percent_Identity=29.1866028708134, Blast_Score=95, Evalue=6e-20, Organism=Drosophila melanogaster, GI28573573, Length=250, Percent_Identity=28, Blast_Score=88, Evalue=9e-18, Organism=Drosophila melanogaster, GI28573571, Length=250, Percent_Identity=28, Blast_Score=88, Evalue=9e-18, Organism=Drosophila melanogaster, GI85725262, Length=205, Percent_Identity=31.219512195122, Blast_Score=85, Evalue=7e-17, Organism=Drosophila melanogaster, GI85726357, Length=246, Percent_Identity=27.6422764227642, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI17136592, Length=208, Percent_Identity=30.2884615384615, Blast_Score=72, Evalue=7e-13, Organism=Drosophila melanogaster, GI24659289, Length=219, Percent_Identity=29.6803652968037, Blast_Score=69, Evalue=6e-12, Organism=Drosophila melanogaster, GI281363262, Length=264, Percent_Identity=26.8939393939394, Blast_Score=65, Evalue=6e-11, Organism=Drosophila melanogaster, GI28571871, Length=203, Percent_Identity=31.5270935960591, Blast_Score=65, Evalue=8e-11, Organism=Drosophila melanogaster, GI24653245, Length=264, Percent_Identity=27.2727272727273, Blast_Score=65, Evalue=8e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 33409; Mature: 33277
Theoretical pI: Translated: 6.96; Mature: 6.96
Prosite motif: PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSTTTAEAITVAGLRKSFGPTRALDGLDLAVGAGEVHGFLGLNGAGKTTTIRILLGLMR CCCCCHHHHHHHHHHHHHCCCCHHCCCCEEEECCCHHEEEEEECCCCCHHHHHHHHHHHH ADAGTTRLLGGDPWGDATRLHRRIAYVPGDVALWPGLTGGEVIDLLGRMRGGLDGKRRDE CCCCCEEECCCCCCCHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHCCCCCHHHHH LLERFDLDPRKRGRAYSKGNRQKVPLVAALASDAELLLLDEPTSGLDPLMEETFRQVIAE HHHHHCCCHHHCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCCCHHHHHHHHHHHHH DRHRLGRTVLLSSHILAEVEVLCDRVTIIRDGRAVESGTLTELRHLTRTSVTAEVTGPAQ HHHHHCHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCHHHHHHHHHHHCEEEEECCCHH DLGTLAGVHDLHIDGTRVRFGVDGAGLPDVLSFLGSAGVRYIVCRPPSLEELFLRHYETQ HHHHHHCCEEEECCCCEEEEECCCCCHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCC PATTASGPGGTR CCCCCCCCCCCC >Mature Secondary Structure TSTTTAEAITVAGLRKSFGPTRALDGLDLAVGAGEVHGFLGLNGAGKTTTIRILLGLMR CCCCHHHHHHHHHHHHHCCCCHHCCCCEEEECCCHHEEEEEECCCCCHHHHHHHHHHHH ADAGTTRLLGGDPWGDATRLHRRIAYVPGDVALWPGLTGGEVIDLLGRMRGGLDGKRRDE CCCCCEEECCCCCCCHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHCCCCCHHHHH LLERFDLDPRKRGRAYSKGNRQKVPLVAALASDAELLLLDEPTSGLDPLMEETFRQVIAE HHHHHCCCHHHCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCCCHHHHHHHHHHHHH DRHRLGRTVLLSSHILAEVEVLCDRVTIIRDGRAVESGTLTELRHLTRTSVTAEVTGPAQ HHHHHCHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCHHHHHHHHHHHCEEEEECCCHH DLGTLAGVHDLHIDGTRVRFGVDGAGLPDVLSFLGSAGVRYIVCRPPSLEELFLRHYETQ HHHHHHCCEEEECCCCEEEEECCCCCHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCC PATTASGPGGTR CCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 1670771; 8590279; 8905231 [H]