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The map label for this gene is xerD [H]

Identifier: 119716408

GI number: 119716408

Start: 2331341

End: 2332252

Strand: Reverse

Name: xerD [H]

Synonym: Noca_2178

Alternate gene names: 119716408

Gene position: 2332252-2331341 (Counterclockwise)

Preceding gene: 119716410

Following gene: 119716407

Centisome position: 46.78

GC content: 68.75

Gene sequence:

>912_bases
ATGAACACTGCCCAACTCATCGTCCCTGGCGCAGACGCCAGCGCCACGCTTCGCATCGCCGTCGCGGCCTACCTTGCACG
TTTCAAGGGCCAGTCCCGGATTCACACCGAGTCCGACCTACGCTCCTACCTCGGCTGGTGCGGCCGGCAAGGATTGGACC
CGTTGGCGGCCCAGCGCCCCCACGTCGAGCTCTTCCTCCGCTGGATGCAGGAGGTCGGCCGATACAAGCCCTCCACCGTC
TCGCGTCGGCTATCGGTGGTCGCCGGCTTCTACCGCACCTGCGTCATCGACGGCCTCCTAAAGCACTCGCCAGCGGAGTA
CGTGCGCCGTCCCCGCGTCTCCACGGAGTCACCCACGCTGGGTCTCAGCCACCTCCAGCTCGAGGCCATGCTCACCGCCG
GCAGGAAGTCGGCCAACATCAACGACTTCGCCCTGGTGACCATGCTGGGCCTGCTCGGGCTGCGGATCTTCGAAGCGACC
GGCGCCAATGTCGAGGCTCTTGAGGAAGTGCACGGACATCGCGTGCTCCGCGTGTGGGGCAAGGGCGACAAGATCGCGCT
GGTCCCGTTGCCACCCGCGGTGGGACGCGCGATCGAGCGCGCGGTCGACGGCCGGACCGGTGGGCCGATCCTCAGAAGCC
GCACCGGCAACCGGATGGACCGGCACTGCGCCACCCGCCGGCTGCGAGCCCTCGCCCGGGTCGCGGGAATCGCCACCGAT
CGGATGCACCCGCACATGCTCCGCCACACCTTCGTCACCACCATGCTCGACGCCGGGGTCGACCTGCGTGACGTCCAGAT
CGCGGCCCGGCACGCCGACCCGAGAACCACCATGCGCTACGACCGCGCCCGCAAGAACCTCGACCGACACCCCAACTACG
TCCTGGCGGCCTACATGGCGTCCGGCACCTGA

Upstream 100 bases:

>100_bases
GCCTGTCGACTGGTGGGAACGCGGCGCCCCCAGGCGCCGATGACGACGGCTGCAGAGCGGTGGCGTTGACAGCGCCTTCT
GCGAGTGACGCAGTGGGGCG

Downstream 100 bases:

>100_bases
CCCGGTCAGCGGCATGGTCGGGCGGTTTCGACCAGCCTGTGCCTTTTGTATACGGGCTGCGCGAGACTCCATGTCATGAC
GTTCGCTGAATCGGTTGCTT

Product: phage integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 303; Mature: 303

Protein sequence:

>303_residues
MNTAQLIVPGADASATLRIAVAAYLARFKGQSRIHTESDLRSYLGWCGRQGLDPLAAQRPHVELFLRWMQEVGRYKPSTV
SRRLSVVAGFYRTCVIDGLLKHSPAEYVRRPRVSTESPTLGLSHLQLEAMLTAGRKSANINDFALVTMLGLLGLRIFEAT
GANVEALEEVHGHRVLRVWGKGDKIALVPLPPAVGRAIERAVDGRTGGPILRSRTGNRMDRHCATRRLRALARVAGIATD
RMHPHMLRHTFVTTMLDAGVDLRDVQIAARHADPRTTMRYDRARKNLDRHPNYVLAAYMASGT

Sequences:

>Translated_303_residues
MNTAQLIVPGADASATLRIAVAAYLARFKGQSRIHTESDLRSYLGWCGRQGLDPLAAQRPHVELFLRWMQEVGRYKPSTV
SRRLSVVAGFYRTCVIDGLLKHSPAEYVRRPRVSTESPTLGLSHLQLEAMLTAGRKSANINDFALVTMLGLLGLRIFEAT
GANVEALEEVHGHRVLRVWGKGDKIALVPLPPAVGRAIERAVDGRTGGPILRSRTGNRMDRHCATRRLRALARVAGIATD
RMHPHMLRHTFVTTMLDAGVDLRDVQIAARHADPRTTMRYDRARKNLDRHPNYVLAAYMASGT
>Mature_303_residues
MNTAQLIVPGADASATLRIAVAAYLARFKGQSRIHTESDLRSYLGWCGRQGLDPLAAQRPHVELFLRWMQEVGRYKPSTV
SRRLSVVAGFYRTCVIDGLLKHSPAEYVRRPRVSTESPTLGLSHLQLEAMLTAGRKSANINDFALVTMLGLLGLRIFEAT
GANVEALEEVHGHRVLRVWGKGDKIALVPLPPAVGRAIERAVDGRTGGPILRSRTGNRMDRHCATRRLRALARVAGIATD
RMHPHMLRHTFVTTMLDAGVDLRDVQIAARHADPRTTMRYDRARKNLDRHPNYVLAAYMASGT

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4974

COG function: function code L; Site-specific recombinase XerD

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=252, Percent_Identity=29.3650793650794, Blast_Score=92, Evalue=5e-20,
Organism=Escherichia coli, GI1790244, Length=214, Percent_Identity=27.5700934579439, Blast_Score=65, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011932 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 33608; Mature: 33608

Theoretical pI: Translated: 11.29; Mature: 11.29

Prosite motif: PS00136 SUBTILASE_ASP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTAQLIVPGADASATLRIAVAAYLARFKGQSRIHTESDLRSYLGWCGRQGLDPLAAQRP
CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCHHHCCCC
HVELFLRWMQEVGRYKPSTVSRRLSVVAGFYRTCVIDGLLKHSPAEYVRRPRVSTESPTL
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCC
GLSHLQLEAMLTAGRKSANINDFALVTMLGLLGLRIFEATGANVEALEEVHGHRVLRVWG
CHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCEEEEEEC
KGDKIALVPLPPAVGRAIERAVDGRTGGPILRSRTGNRMDRHCATRRLRALARVAGIATD
CCCEEEEEECCHHHHHHHHHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHC
RMHPHMLRHTFVTTMLDAGVDLRDVQIAARHADPRTTMRYDRARKNLDRHPNYVLAAYMA
CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEEEEEC
SGT
CCC
>Mature Secondary Structure
MNTAQLIVPGADASATLRIAVAAYLARFKGQSRIHTESDLRSYLGWCGRQGLDPLAAQRP
CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCHHHCCCC
HVELFLRWMQEVGRYKPSTVSRRLSVVAGFYRTCVIDGLLKHSPAEYVRRPRVSTESPTL
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCC
GLSHLQLEAMLTAGRKSANINDFALVTMLGLLGLRIFEATGANVEALEEVHGHRVLRVWG
CHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCEEEEEEC
KGDKIALVPLPPAVGRAIERAVDGRTGGPILRSRTGNRMDRHCATRRLRALARVAGIATD
CCCEEEEEECCHHHHHHHHHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHC
RMHPHMLRHTFVTTMLDAGVDLRDVQIAARHADPRTTMRYDRARKNLDRHPNYVLAAYMA
CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEEEEEC
SGT
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]