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The map label for this gene is yfdE [H]

Identifier: 119716387

GI number: 119716387

Start: 2305394

End: 2306617

Strand: Reverse

Name: yfdE [H]

Synonym: Noca_2156

Alternate gene names: 119716387

Gene position: 2306617-2305394 (Counterclockwise)

Preceding gene: 119716388

Following gene: 119716386

Centisome position: 46.26

GC content: 62.17

Gene sequence:

>1224_bases
ATGACCGACGGGGACAACTCGGACCTTCGGCCCAGGCCTGGACCGTTGCGAGGAACCACCGTCATCGACATGACGCGTGC
CCTTGCCGGTCCCCACGCTGCAATGCTCCTAGGTGATCTCGGTGCCCATGTGATCAAAGTGGAGTCGGCAGCGGGCGACG
AGTCCAGATCTTGGGGACCCCCGTTCATCGGCGATGGCGACGACGACCGGGTCTCCACCTACTTCCTCGCGGCCAACCGC
AACAAGCAGTCCTTCCAACTGGACCTCAAGTCAGGCGACGACATATCTCTCCTGATCCGCCTTGTTCGTCACGCGGACGT
ACTGATGGAGAACTTTCGCCCCGGCGTACTAGAGCGTCTGGGCCTGCCGCCAGAGCGTTTGCTTGACATCAACCCGAAGC
TCGTCGTTCTCTCCATCACCGGATTGGGACATGACGGACCAGAAGGCGCCCGCCCCGGCTACGACCAAATTGCACAAGGC
GAGGCCGGCCTGATGTCGATAACGGGTCCGCCGGGGGAGCCGACGCGGGTCGGAGTTCCCATCGCGGACCTGCTGGCCGG
AATCTACGGCGCTTACGGCACGCTGGCCGCGATCCTCCGGGCTCGCGAGACTGGCGAGGGTGCCATTGTCAGAACGTCTC
TTCTGGCCGCGATCTGCGGGGTGCACAGTTTCCAGGCGACGCGGTTTCTCGTGGGTGGTGAGAACCCCGTCTCGTCCGGA
AATCACCACCCATCGATCGCACCGTACGGAACATTCACGGCATCTGACGGGATCATCCAAATCGCGGCCGCCAACGATCG
ACTGTGGAGCGCGCTCGCGCATGAGCTGCGAATCGACCCAACGGCTACGGAATTCGCTACCAACCAGGCGCGAGTCGCCC
ACAGGGCAGAACTGATCGAGTCCATCGAGACCCGGTTGACCAGCAACACGTCAGATCACTGGATCGATGTCATCACGGCC
GCCGGTGTGCCATGTGGTCGAGTGCGGTCAATTGAAGACGTTTACGAATGGCCCCAGGCCCTCAGCCAAGGCCTTGTCAT
ACAAGTCGAACACGAGACTGCAGGTCGGCTCAACCTTCCAGGCTCGCCAGTGCGAATCGAGAATCGCGATGGGGCAGACC
TGATGCCGAGCTGGCATCTGCCCCCACCGGGCCTGGGTGAGCACAACCGAGCGGTCCGAGACTGGCTCGACCAACGAGAC
TCGATTGATAACCAGAAGCATTGA

Upstream 100 bases:

>100_bases
GTAGTAACGACGACGTCCTGGAACAGGTATACGGAAGCCACGACTTTCGCGAAGCCGTGGAACGCTTCGGAGCGAGACAG
GACCCGAAGTGGAGTGGCCG

Downstream 100 bases:

>100_bases
GCCGTCGCTGTATCAGCGAACCAGGCGACGACACGGCGAATGGCCGGCGTCGGGTAGTCCGGCTTCGTGAGTAGTCCAAT
GCACTCCCCAAGGAAGTCAT

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 407; Mature: 406

Protein sequence:

>407_residues
MTDGDNSDLRPRPGPLRGTTVIDMTRALAGPHAAMLLGDLGAHVIKVESAAGDESRSWGPPFIGDGDDDRVSTYFLAANR
NKQSFQLDLKSGDDISLLIRLVRHADVLMENFRPGVLERLGLPPERLLDINPKLVVLSITGLGHDGPEGARPGYDQIAQG
EAGLMSITGPPGEPTRVGVPIADLLAGIYGAYGTLAAILRARETGEGAIVRTSLLAAICGVHSFQATRFLVGGENPVSSG
NHHPSIAPYGTFTASDGIIQIAAANDRLWSALAHELRIDPTATEFATNQARVAHRAELIESIETRLTSNTSDHWIDVITA
AGVPCGRVRSIEDVYEWPQALSQGLVIQVEHETAGRLNLPGSPVRIENRDGADLMPSWHLPPPGLGEHNRAVRDWLDQRD
SIDNQKH

Sequences:

>Translated_407_residues
MTDGDNSDLRPRPGPLRGTTVIDMTRALAGPHAAMLLGDLGAHVIKVESAAGDESRSWGPPFIGDGDDDRVSTYFLAANR
NKQSFQLDLKSGDDISLLIRLVRHADVLMENFRPGVLERLGLPPERLLDINPKLVVLSITGLGHDGPEGARPGYDQIAQG
EAGLMSITGPPGEPTRVGVPIADLLAGIYGAYGTLAAILRARETGEGAIVRTSLLAAICGVHSFQATRFLVGGENPVSSG
NHHPSIAPYGTFTASDGIIQIAAANDRLWSALAHELRIDPTATEFATNQARVAHRAELIESIETRLTSNTSDHWIDVITA
AGVPCGRVRSIEDVYEWPQALSQGLVIQVEHETAGRLNLPGSPVRIENRDGADLMPSWHLPPPGLGEHNRAVRDWLDQRD
SIDNQKH
>Mature_406_residues
TDGDNSDLRPRPGPLRGTTVIDMTRALAGPHAAMLLGDLGAHVIKVESAAGDESRSWGPPFIGDGDDDRVSTYFLAANRN
KQSFQLDLKSGDDISLLIRLVRHADVLMENFRPGVLERLGLPPERLLDINPKLVVLSITGLGHDGPEGARPGYDQIAQGE
AGLMSITGPPGEPTRVGVPIADLLAGIYGAYGTLAAILRARETGEGAIVRTSLLAAICGVHSFQATRFLVGGENPVSSGN
HHPSIAPYGTFTASDGIIQIAAANDRLWSALAHELRIDPTATEFATNQARVAHRAELIESIETRLTSNTSDHWIDVITAA
GVPCGRVRSIEDVYEWPQALSQGLVIQVEHETAGRLNLPGSPVRIENRDGADLMPSWHLPPPGLGEHNRAVRDWLDQRDS
IDNQKH

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=379, Percent_Identity=37.7308707124011, Blast_Score=267, Evalue=1e-71,
Organism=Homo sapiens, GI300863124, Length=404, Percent_Identity=35.3960396039604, Blast_Score=252, Evalue=4e-67,
Organism=Homo sapiens, GI300863126, Length=377, Percent_Identity=34.2175066312997, Blast_Score=219, Evalue=3e-57,
Organism=Homo sapiens, GI13376042, Length=404, Percent_Identity=32.4257425742574, Blast_Score=214, Evalue=1e-55,
Organism=Homo sapiens, GI266456254, Length=343, Percent_Identity=25.3644314868805, Blast_Score=94, Evalue=2e-19,
Organism=Homo sapiens, GI42794625, Length=343, Percent_Identity=25.3644314868805, Blast_Score=94, Evalue=2e-19,
Organism=Homo sapiens, GI266458393, Length=283, Percent_Identity=28.9752650176678, Blast_Score=90, Evalue=4e-18,
Organism=Homo sapiens, GI266458397, Length=261, Percent_Identity=29.1187739463602, Blast_Score=87, Evalue=3e-17,
Organism=Homo sapiens, GI266458395, Length=142, Percent_Identity=33.8028169014084, Blast_Score=75, Evalue=1e-13,
Organism=Homo sapiens, GI42822893, Length=142, Percent_Identity=33.8028169014084, Blast_Score=75, Evalue=1e-13,
Organism=Escherichia coli, GI87082093, Length=367, Percent_Identity=36.2397820163488, Blast_Score=231, Evalue=6e-62,
Organism=Escherichia coli, GI1788717, Length=418, Percent_Identity=27.0334928229665, Blast_Score=112, Evalue=5e-26,
Organism=Escherichia coli, GI1786222, Length=356, Percent_Identity=24.7191011235955, Blast_Score=87, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI32564160, Length=348, Percent_Identity=26.1494252873563, Blast_Score=98, Evalue=6e-21,
Organism=Caenorhabditis elegans, GI115535051, Length=339, Percent_Identity=22.7138643067847, Blast_Score=77, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24648431, Length=383, Percent_Identity=39.1644908616188, Blast_Score=245, Evalue=3e-65,
Organism=Drosophila melanogaster, GI24585488, Length=314, Percent_Identity=26.7515923566879, Blast_Score=97, Evalue=1e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 43735; Mature: 43604

Theoretical pI: Translated: 5.25; Mature: 5.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDGDNSDLRPRPGPLRGTTVIDMTRALAGPHAAMLLGDLGAHVIKVESAAGDESRSWGP
CCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHCCCEEEEEECCCCCCCCCCCC
PFIGDGDDDRVSTYFLAANRNKQSFQLDLKSGDDISLLIRLVRHADVLMENFRPGVLERL
CCCCCCCCCCEEEEEEEECCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHH
GLPPERLLDINPKLVVLSITGLGHDGPEGARPGYDQIAQGEAGLMSITGPPGEPTRVGVP
CCCHHHHCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHCCCCCEEEEECCCCCCCEECCC
IADLLAGIYGAYGTLAAILRARETGEGAIVRTSLLAAICGVHSFQATRFLVGGENPVSSG
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCC
NHHPSIAPYGTFTASDGIIQIAAANDRLWSALAHELRIDPTATEFATNQARVAHRAELIE
CCCCCCCCCCCEECCCCEEEEEECCHHHHHHHHHHHCCCCCHHHHHCCHHHHHHHHHHHH
SIETRLTSNTSDHWIDVITAAGVPCGRVRSIEDVYEWPQALSQGLVIQVEHETAGRLNLP
HHHHHHCCCCCHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHCCCCEEEEECCCCCEECCC
GSPVRIENRDGADLMPSWHLPPPGLGEHNRAVRDWLDQRDSIDNQKH
CCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
TDGDNSDLRPRPGPLRGTTVIDMTRALAGPHAAMLLGDLGAHVIKVESAAGDESRSWGP
CCCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHCCCEEEEEECCCCCCCCCCCC
PFIGDGDDDRVSTYFLAANRNKQSFQLDLKSGDDISLLIRLVRHADVLMENFRPGVLERL
CCCCCCCCCCEEEEEEEECCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHH
GLPPERLLDINPKLVVLSITGLGHDGPEGARPGYDQIAQGEAGLMSITGPPGEPTRVGVP
CCCHHHHCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHCCCCCEEEEECCCCCCCEECCC
IADLLAGIYGAYGTLAAILRARETGEGAIVRTSLLAAICGVHSFQATRFLVGGENPVSSG
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCC
NHHPSIAPYGTFTASDGIIQIAAANDRLWSALAHELRIDPTATEFATNQARVAHRAELIE
CCCCCCCCCCCEECCCCEEEEEECCHHHHHHHHHHHCCCCCHHHHHCCHHHHHHHHHHHH
SIETRLTSNTSDHWIDVITAAGVPCGRVRSIEDVYEWPQALSQGLVIQVEHETAGRLNLP
HHHHHHCCCCCHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHCCCCEEEEECCCCCEECCC
GSPVRIENRDGADLMPSWHLPPPGLGEHNRAVRDWLDQRDSIDNQKH
CCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]