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The map label for this gene is yagI [H]

Identifier: 119716364

GI number: 119716364

Start: 2282542

End: 2283318

Strand: Reverse

Name: yagI [H]

Synonym: Noca_2133

Alternate gene names: 119716364

Gene position: 2283318-2282542 (Counterclockwise)

Preceding gene: 119716365

Following gene: 119716358

Centisome position: 45.8

GC content: 62.81

Gene sequence:

>777_bases
ATGAGTGAGGTTTCGACTGTTCGAGCCGCCGATGATTCTACGTCGGTGGTAGAGCGCGTGTTTCAGGTGCTGGGAGCACT
TGACATGGCAGGCGAGCCCACCGCACTGGGTCAAATCAGTGAGCGAACTTCGCTTCCGAAGCCGACGGTGCACCGGTTGC
TGCAGCAACTCATCGCCCAGGGCGCCGTAGAGCGAGTTGGTCAGCACTATCGCCCGGGTATCAGACTTTTCGAGCTCGGA
GCGTCGGTCGGTCGGCAGCAGCGTCTCCGCGAGGTTGCAATGCCGTTCCTGGAGGACCTCCACCAGCGCGTCGGACACTC
AATCCATTTGGGTGTCCAGCATGGCGGAGAGGTTCTCTACTTGGAGAAGATCAGCGGGCCGCACCGCAACGTCGTCAACA
CCAGACCCGGGACCAGGAAGCCGATGCATTGCACTGGGCTTGGGAAAGCGATGCTCGCCTACAGCTCGGCAGAGGCCAAG
GAAGCGGTCATCGCCCGTGGATTGCCTCCACGTACTCGGTACACGATCACCTCCCCTGCAGGTCTCTCTCGACAGCTCGC
TCAGGTCGCAGAAGACGGATACGCCTTGGATCGCGAGGAGCACGCTCTCGGGGTGTTGTGCGTGGCGGCGCCGGTCGTTG
ATGCCGCCGGGAACGCCAGCCTGGCGTTGTCAGTCTCCGGTCCGTTGGACGCACCTGCTGTTCAGCGAAGCATCCGGGCC
GTCACGCAGGCTGCTGCTGGCTTGGCCACCGCTCTCGGTGGGAGAACCTGGAGCTAA

Upstream 100 bases:

>100_bases
GGGGTCTGACGATGCTTGGTGACGGGCGGTGCGTTCTCGAGAAGAGGGCTGTCTGGTCACCCGCCGTGCCGACGAGCAGC
GACGCTGAGAGGAGAGGGTC

Downstream 100 bases:

>100_bases
CAGCGCAGAACCCGCGCCCACAGGCACCCCGTCGGCTACAGCTGACGCGTTGGGTCGTGTGATCGACTTAGGTGCGGCGT
CGGTCGACGTCGAGGTATCC

Product: IclR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 258; Mature: 257

Protein sequence:

>258_residues
MSEVSTVRAADDSTSVVERVFQVLGALDMAGEPTALGQISERTSLPKPTVHRLLQQLIAQGAVERVGQHYRPGIRLFELG
ASVGRQQRLREVAMPFLEDLHQRVGHSIHLGVQHGGEVLYLEKISGPHRNVVNTRPGTRKPMHCTGLGKAMLAYSSAEAK
EAVIARGLPPRTRYTITSPAGLSRQLAQVAEDGYALDREEHALGVLCVAAPVVDAAGNASLALSVSGPLDAPAVQRSIRA
VTQAAAGLATALGGRTWS

Sequences:

>Translated_258_residues
MSEVSTVRAADDSTSVVERVFQVLGALDMAGEPTALGQISERTSLPKPTVHRLLQQLIAQGAVERVGQHYRPGIRLFELG
ASVGRQQRLREVAMPFLEDLHQRVGHSIHLGVQHGGEVLYLEKISGPHRNVVNTRPGTRKPMHCTGLGKAMLAYSSAEAK
EAVIARGLPPRTRYTITSPAGLSRQLAQVAEDGYALDREEHALGVLCVAAPVVDAAGNASLALSVSGPLDAPAVQRSIRA
VTQAAAGLATALGGRTWS
>Mature_257_residues
SEVSTVRAADDSTSVVERVFQVLGALDMAGEPTALGQISERTSLPKPTVHRLLQQLIAQGAVERVGQHYRPGIRLFELGA
SVGRQQRLREVAMPFLEDLHQRVGHSIHLGVQHGGEVLYLEKISGPHRNVVNTRPGTRKPMHCTGLGKAMLAYSSAEAKE
AVIARGLPPRTRYTITSPAGLSRQLAQVAEDGYALDREEHALGVLCVAAPVVDAAGNASLALSVSGPLDAPAVQRSIRAV
TQAAAGLATALGGRTWS

Specific function: Unknown

COG id: COG1414

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 iclR-ED (iclR effector binding) domain [H]

Homologues:

Organism=Escherichia coli, GI1786468, Length=248, Percent_Identity=34.6774193548387, Blast_Score=116, Evalue=1e-27,
Organism=Escherichia coli, GI87082359, Length=228, Percent_Identity=33.3333333333333, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI1788131, Length=222, Percent_Identity=34.6846846846847, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1786715, Length=243, Percent_Identity=28.8065843621399, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1790752, Length=256, Percent_Identity=25.78125, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1789999, Length=198, Percent_Identity=31.3131313131313, Blast_Score=91, Evalue=9e-20,
Organism=Escherichia coli, GI1788581, Length=214, Percent_Identity=30.3738317757009, Blast_Score=86, Evalue=2e-18,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014757
- InterPro:   IPR005471
- InterPro:   IPR011991 [H]

Pfam domain/function: PF09339 HTH_IclR; PF01614 IclR [H]

EC number: NA

Molecular weight: Translated: 27367; Mature: 27235

Theoretical pI: Translated: 9.51; Mature: 9.51

Prosite motif: PS51077 HTH_ICLR ; PS51078 ICLR_ED

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEVSTVRAADDSTSVVERVFQVLGALDMAGEPTALGQISERTSLPKPTVHRLLQQLIAQ
CCCCCHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHH
GAVERVGQHYRPGIRLFELGASVGRQQRLREVAMPFLEDLHQRVGHSIHLGVQHGGEVLY
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCEEE
LEKISGPHRNVVNTRPGTRKPMHCTGLGKAMLAYSSAEAKEAVIARGLPPRTRYTITSPA
EECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCC
GLSRQLAQVAEDGYALDREEHALGVLCVAAPVVDAAGNASLALSVSGPLDAPAVQRSIRA
CHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHH
VTQAAAGLATALGGRTWS
HHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
SEVSTVRAADDSTSVVERVFQVLGALDMAGEPTALGQISERTSLPKPTVHRLLQQLIAQ
CCCCHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHH
GAVERVGQHYRPGIRLFELGASVGRQQRLREVAMPFLEDLHQRVGHSIHLGVQHGGEVLY
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCEEE
LEKISGPHRNVVNTRPGTRKPMHCTGLGKAMLAYSSAEAKEAVIARGLPPRTRYTITSPA
EECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCC
GLSRQLAQVAEDGYALDREEHALGVLCVAAPVVDAAGNASLALSVSGPLDAPAVQRSIRA
CHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHH
VTQAAAGLATALGGRTWS
HHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]