| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
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The map label for this gene is uvrA [H]
Identifier: 119716350
GI number: 119716350
Start: 2264684
End: 2267194
Strand: Direct
Name: uvrA [H]
Synonym: Noca_2119
Alternate gene names: 119716350
Gene position: 2264684-2267194 (Clockwise)
Preceding gene: 119716349
Following gene: 119716351
Centisome position: 45.42
GC content: 69.73
Gene sequence:
>2511_bases GTGAAGGGCGCCGGCCGGACCGCGCGGAACGGAATCCAGGTGCGGGGCGCGCGTGTGCACAACCTCAAGGACGTGTCGGT CGATGTTCCCTTGGACGGCTTGGTCGCGATCGCGGGGGTTTCGGGTTCGGGGAAGTCGTCGCTGGCGATGGGGGTGCTGT ATGCCGAGGGGTCGCGCCGCTACGTCGAGGCGTTGTCGACCTACACGCGGCGACGGATGGCGCACGCCACCCGCGCGCAG GTCGACGAGGTGCGGCACGTGCCGGCGGCGCTGGCATTGCGACAGCGTCCGGCCGTGCCGGGGGTCCGTTCGACCTTCGG GACGTCCACGGAGCTGTTGAACGTGTTGCGGGTGATGTTCTCTCGTCTTGGCGCGCACCTGTGCCCCAACGGTCACCGGC TGGCACCGACGATCGACGTGGCGGCGGACAAGGATCTGGTCTGTCCCGAGTGTGGCGCGCAGTTCTCCCCGCCTGGCGCC GAGTCTTTCGCGTTCAACTCCGGCGGCGCCTGCCCGGTCTGCCAGGGCACCGGCACGGTCCGCGACGTCGACGATGCCGC GCTCGTCCCCGACGAGTCCAGGTCCATCGCGGACGGTGCGGTCGCACCGTGGGGCATGTTCGGGCTGACGGTGATGCCGC AGGTCGTCGCCGAGCTGGGGGTCCGCACGGGGGTCCCGTACGCCGACCTCACCGACGCCGAGCGGGAGATCGTGCTCGAC GGCCCGCAGGTGAAGAAGCACATCAGGGTGCCATCGAGGAACGGGAAGCTGTTCGACCTGGACTTCACCTACCGCAACGC CCGGCTGGCGGTGCGAGAGGCGATGAACAACGCCACCAGCGAGAAGGGCCTGGCTCGCGTGGCCCGGTTCATCACCGCCC ACACTTGCCACGCCTGCGGCGGCACCCGCCTCTCCGAGGAGGCACGCGGCACCCAGGTCGCCGGCATCGACCTCGCCGAG GCAACCGCCTTGACCCTGGACGAGGCGGTCGCCTGGGTGCCCTCGGTGACCGACACCCTGCCCGCGGACATGCATCCGAT GGCCCGGATGCTCATCATCCAGTTCGAGGCGATGGCCCGGCGGCTGACCGAGCTCGGGCTGGGCTACCTGAGCCTGGACC GGACGGGTTCCACCCTGTCGACCGGTGAACGGCAACGCGTCCAGCTCGCGCGAGCGGTCCGCAACGACACCACCGGGGTG CTCTATGTCCTCGACGAGCCTTCCATCGGCCTGCACCCGGCGAATGTGGAGGGGCTCGTGGCAGTGATGCGGGATCTCCT CGACAACGGGAACTCCGTTGTCGTGGTCGACCACGACGTGCAGGTCCTGCGTGAGGCGGACTGGATGATCGAGCTCGGCC CCGGCTCCGGCGCAGACGGCGGGACAGTCCTCACCCAGGGCACCATCGCGCAGGTTGCCGCCGATCCCTCGTCGCTGATC GGCCCGTTCCTCACCGGCGGTGTGGACGTCGTCCGTCGTCTTCGTACGCCGCTCGAGACATCGGAGGACCGTGGTGTGAT CCGGCTGGTGACCTCGCGGCTGCACACCGTGCAGGCCCTGGACGTCACCATCCCCCAGGGTCGACTGACCGCGGTGACCG GGATGTCGGGGTCGGGCAAGACCACGCTCGTGCTCGACAGCCTGGTCCCTGCGTTGCGGGCCACCGCCGACAACACCCCG CTGCCCGACCATGTGGTCTCCGTCGACACCGCAGGGGTGTCGAGGGTCGACGTGGTCGACGCCTCTCCGATCGGCGTGAA CGTCCGCTCCACCGTCGCGACGTACTCGGGGATCCTCGACGAGCTGCGCCGAGCGTACGCAGCCAGTGATGCCGCGAAGG ACCGCGGACTGACCGCGGCCGACTTCTCCTACAACACCGGGTCGCTGCGCTGTCCGCGCTGCGAAGGCACCGGCCAAGTC GTCCTGGACGTGCAGTTCCTGCCCGACGTCGACATCCCCTGTCCCGACTGCGGAGGCGCCCGCTACTCACCCAGCAGCAA CGACATCCTCCTCGACACCGAGGACGGTACGCAGTCGCTTCCCGGGCTGCTCGCCCTCACCGTCCGGCAGGCTCATGAAG TGCTCGACGGGCTGCCGAAGGTGCGTCGCAAGCTGCAGACCCTCATCGACCTCGGACTCGGCTACCTCACCCTCGGCGAA GGCACCCCGGCCCTCTCCGGCGGGGAGGCGCAACGGCTCAAGCTCGCCTCCGAGCTCGGCCGCGACCAGTCCGGCACGCT GTTCGTTCTCGACGAGCCGTCCGTGGGCCTGCACCCCCTCGACACCCAGGTCCTGATCGGGGTGCTCGACCGGCTCCTGG CCAAGGGGGCCACGATCGTCCTCGTCGAGCACGACCTCGAATTGATCGCCAACGCCGACCACGTCATCGACATGGGCCCC GGCGGTGGGACAGCCGGCGGTCGCATCATCGCCAGCGGCACTCCCGAGCACATCGCCGCCTCCACGGACAGCATCACCGG CCGGTACCTCCGGGTCGGACCCTGTCGGTGA
Upstream 100 bases:
>100_bases CGCCATCAGCCGAGGACGGGTCCTGGAGACGCCCCTGATCGAGAGGCGCGACCAGATCGAGAAGACTGACGGGATCGAGA AGGGGCACGTGATCGACGAG
Downstream 100 bases:
>100_bases ATGTCGCCGTTCGGGTGACATCCACGGTCTGGCGACACGCCGTGTCAGCCGACCAGCCGAGCATGACCGTAGGTCGGACC TCCCATCCGGACCATCCACA
Product: ABC transporter-like protein
Products: NA
Alternate protein names: UvrA protein; Excinuclease ABC subunit A [H]
Number of amino acids: Translated: 836; Mature: 836
Protein sequence:
>836_residues MKGAGRTARNGIQVRGARVHNLKDVSVDVPLDGLVAIAGVSGSGKSSLAMGVLYAEGSRRYVEALSTYTRRRMAHATRAQ VDEVRHVPAALALRQRPAVPGVRSTFGTSTELLNVLRVMFSRLGAHLCPNGHRLAPTIDVAADKDLVCPECGAQFSPPGA ESFAFNSGGACPVCQGTGTVRDVDDAALVPDESRSIADGAVAPWGMFGLTVMPQVVAELGVRTGVPYADLTDAEREIVLD GPQVKKHIRVPSRNGKLFDLDFTYRNARLAVREAMNNATSEKGLARVARFITAHTCHACGGTRLSEEARGTQVAGIDLAE ATALTLDEAVAWVPSVTDTLPADMHPMARMLIIQFEAMARRLTELGLGYLSLDRTGSTLSTGERQRVQLARAVRNDTTGV LYVLDEPSIGLHPANVEGLVAVMRDLLDNGNSVVVVDHDVQVLREADWMIELGPGSGADGGTVLTQGTIAQVAADPSSLI GPFLTGGVDVVRRLRTPLETSEDRGVIRLVTSRLHTVQALDVTIPQGRLTAVTGMSGSGKTTLVLDSLVPALRATADNTP LPDHVVSVDTAGVSRVDVVDASPIGVNVRSTVATYSGILDELRRAYAASDAAKDRGLTAADFSYNTGSLRCPRCEGTGQV VLDVQFLPDVDIPCPDCGGARYSPSSNDILLDTEDGTQSLPGLLALTVRQAHEVLDGLPKVRRKLQTLIDLGLGYLTLGE GTPALSGGEAQRLKLASELGRDQSGTLFVLDEPSVGLHPLDTQVLIGVLDRLLAKGATIVLVEHDLELIANADHVIDMGP GGGTAGGRIIASGTPEHIAASTDSITGRYLRVGPCR
Sequences:
>Translated_836_residues MKGAGRTARNGIQVRGARVHNLKDVSVDVPLDGLVAIAGVSGSGKSSLAMGVLYAEGSRRYVEALSTYTRRRMAHATRAQ VDEVRHVPAALALRQRPAVPGVRSTFGTSTELLNVLRVMFSRLGAHLCPNGHRLAPTIDVAADKDLVCPECGAQFSPPGA ESFAFNSGGACPVCQGTGTVRDVDDAALVPDESRSIADGAVAPWGMFGLTVMPQVVAELGVRTGVPYADLTDAEREIVLD GPQVKKHIRVPSRNGKLFDLDFTYRNARLAVREAMNNATSEKGLARVARFITAHTCHACGGTRLSEEARGTQVAGIDLAE ATALTLDEAVAWVPSVTDTLPADMHPMARMLIIQFEAMARRLTELGLGYLSLDRTGSTLSTGERQRVQLARAVRNDTTGV LYVLDEPSIGLHPANVEGLVAVMRDLLDNGNSVVVVDHDVQVLREADWMIELGPGSGADGGTVLTQGTIAQVAADPSSLI GPFLTGGVDVVRRLRTPLETSEDRGVIRLVTSRLHTVQALDVTIPQGRLTAVTGMSGSGKTTLVLDSLVPALRATADNTP LPDHVVSVDTAGVSRVDVVDASPIGVNVRSTVATYSGILDELRRAYAASDAAKDRGLTAADFSYNTGSLRCPRCEGTGQV VLDVQFLPDVDIPCPDCGGARYSPSSNDILLDTEDGTQSLPGLLALTVRQAHEVLDGLPKVRRKLQTLIDLGLGYLTLGE GTPALSGGEAQRLKLASELGRDQSGTLFVLDEPSVGLHPLDTQVLIGVLDRLLAKGATIVLVEHDLELIANADHVIDMGP GGGTAGGRIIASGTPEHIAASTDSITGRYLRVGPCR >Mature_836_residues MKGAGRTARNGIQVRGARVHNLKDVSVDVPLDGLVAIAGVSGSGKSSLAMGVLYAEGSRRYVEALSTYTRRRMAHATRAQ VDEVRHVPAALALRQRPAVPGVRSTFGTSTELLNVLRVMFSRLGAHLCPNGHRLAPTIDVAADKDLVCPECGAQFSPPGA ESFAFNSGGACPVCQGTGTVRDVDDAALVPDESRSIADGAVAPWGMFGLTVMPQVVAELGVRTGVPYADLTDAEREIVLD GPQVKKHIRVPSRNGKLFDLDFTYRNARLAVREAMNNATSEKGLARVARFITAHTCHACGGTRLSEEARGTQVAGIDLAE ATALTLDEAVAWVPSVTDTLPADMHPMARMLIIQFEAMARRLTELGLGYLSLDRTGSTLSTGERQRVQLARAVRNDTTGV LYVLDEPSIGLHPANVEGLVAVMRDLLDNGNSVVVVDHDVQVLREADWMIELGPGSGADGGTVLTQGTIAQVAADPSSLI GPFLTGGVDVVRRLRTPLETSEDRGVIRLVTSRLHTVQALDVTIPQGRLTAVTGMSGSGKTTLVLDSLVPALRATADNTP LPDHVVSVDTAGVSRVDVVDASPIGVNVRSTVATYSGILDELRRAYAASDAAKDRGLTAADFSYNTGSLRCPRCEGTGQV VLDVQFLPDVDIPCPDCGGARYSPSSNDILLDTEDGTQSLPGLLALTVRQAHEVLDGLPKVRRKLQTLIDLGLGYLTLGE GTPALSGGEAQRLKLASELGRDQSGTLFVLDEPSVGLHPLDTQVLIGVLDRLLAKGATIVLVEHDLELIANADHVIDMGP GGGTAGGRIIASGTPEHIAASTDSITGRYLRVGPCR
Specific function: The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion h
COG id: COG0178
COG function: function code L; Excinuclease ATPase subunit
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 ABC transporter domains [H]
Homologues:
Organism=Escherichia coli, GI2367343, Length=702, Percent_Identity=34.7578347578348, Blast_Score=404, Evalue=1e-113,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR013815 - InterPro: IPR003593 - InterPro: IPR004602 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 88138; Mature: 88138
Theoretical pI: Translated: 5.74; Mature: 5.74
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKGAGRTARNGIQVRGARVHNLKDVSVDVPLDGLVAIAGVSGSGKSSLAMGVLYAEGSRR CCCCCCCCCCCEEEECEEECCCEEEEEECCCCCEEEEEECCCCCCCCEEEEEEEECCCHH YVEALSTYTRRRMAHATRAQVDEVRHVPAALALRQRPAVPGVRSTFGTSTELLNVLRVMF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHHHHH SRLGAHLCPNGHRLAPTIDVAADKDLVCPECGAQFSPPGAESFAFNSGGACPVCQGTGTV HHCCHHHCCCCCEECCEEEECCCCCCCCCCCCCCCCCCCCCCCEECCCCCCEEECCCCCC RDVDDAALVPDESRSIADGAVAPWGMFGLTVMPQVVAELGVRTGVPYADLTDAEREIVLD EECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEC GPQVKKHIRVPSRNGKLFDLDFTYRNARLAVREAMNNATSEKGLARVARFITAHTCHACG CHHHHHHCCCCCCCCCEEEEEEEECCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCC GTRLSEEARGTQVAGIDLAEATALTLDEAVAWVPSVTDTLPADMHPMARMLIIQFEAMAR CCCCCHHHCCCEEECCCHHHHHHHHHHHHHHHCCCCHHCCCCCHHHHHHHHHHHHHHHHH RLTELGLGYLSLDRTGSTLSTGERQRVQLARAVRNDTTGVLYVLDEPSIGLHPANVEGLV HHHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHH AVMRDLLDNGNSVVVVDHDVQVLREADWMIELGPGSGADGGTVLTQGTIAQVAADPSSLI HHHHHHHCCCCEEEEECCCHHHHHCCCCEEEECCCCCCCCCEEEECCCHHHHHCCCHHHH GPFLTGGVDVVRRLRTPLETSEDRGVIRLVTSRLHTVQALDVTIPQGRLTAVTGMSGSGK HHHHHCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHEEEEEEECCCCCEEEEECCCCCCC TTLVLDSLVPALRATADNTPLPDHVVSVDTAGVSRVDVVDASPIGVNVRSTVATYSGILD EEEEHHHHHHHHHHCCCCCCCCCCEEEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHH ELRRAYAASDAAKDRGLTAADFSYNTGSLRCPRCEGTGQVVLDVQFLPDVDIPCPDCGGA HHHHHHHHCHHHHHCCCEEEECCCCCCCEECCCCCCCCEEEEEEEECCCCCCCCCCCCCC RYSPSSNDILLDTEDGTQSLPGLLALTVRQAHEVLDGLPKVRRKLQTLIDLGLGYLTLGE CCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECC GTPALSGGEAQRLKLASELGRDQSGTLFVLDEPSVGLHPLDTQVLIGVLDRLLAKGATIV CCCCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCEEE LVEHDLELIANADHVIDMGPGGGTAGGRIIASGTPEHIAASTDSITGRYLRVGPCR EEECCHHHHCCCCCEEEECCCCCCCCCEEEECCCCHHHCCCCCCCCCCEEEECCCC >Mature Secondary Structure MKGAGRTARNGIQVRGARVHNLKDVSVDVPLDGLVAIAGVSGSGKSSLAMGVLYAEGSRR CCCCCCCCCCCEEEECEEECCCEEEEEECCCCCEEEEEECCCCCCCCEEEEEEEECCCHH YVEALSTYTRRRMAHATRAQVDEVRHVPAALALRQRPAVPGVRSTFGTSTELLNVLRVMF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHHHHH SRLGAHLCPNGHRLAPTIDVAADKDLVCPECGAQFSPPGAESFAFNSGGACPVCQGTGTV HHCCHHHCCCCCEECCEEEECCCCCCCCCCCCCCCCCCCCCCCEECCCCCCEEECCCCCC RDVDDAALVPDESRSIADGAVAPWGMFGLTVMPQVVAELGVRTGVPYADLTDAEREIVLD EECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEC GPQVKKHIRVPSRNGKLFDLDFTYRNARLAVREAMNNATSEKGLARVARFITAHTCHACG CHHHHHHCCCCCCCCCEEEEEEEECCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCC GTRLSEEARGTQVAGIDLAEATALTLDEAVAWVPSVTDTLPADMHPMARMLIIQFEAMAR CCCCCHHHCCCEEECCCHHHHHHHHHHHHHHHCCCCHHCCCCCHHHHHHHHHHHHHHHHH RLTELGLGYLSLDRTGSTLSTGERQRVQLARAVRNDTTGVLYVLDEPSIGLHPANVEGLV HHHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHH AVMRDLLDNGNSVVVVDHDVQVLREADWMIELGPGSGADGGTVLTQGTIAQVAADPSSLI HHHHHHHCCCCEEEEECCCHHHHHCCCCEEEECCCCCCCCCEEEECCCHHHHHCCCHHHH GPFLTGGVDVVRRLRTPLETSEDRGVIRLVTSRLHTVQALDVTIPQGRLTAVTGMSGSGK HHHHHCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHEEEEEEECCCCCEEEEECCCCCCC TTLVLDSLVPALRATADNTPLPDHVVSVDTAGVSRVDVVDASPIGVNVRSTVATYSGILD EEEEHHHHHHHHHHCCCCCCCCCCEEEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHH ELRRAYAASDAAKDRGLTAADFSYNTGSLRCPRCEGTGQVVLDVQFLPDVDIPCPDCGGA HHHHHHHHCHHHHHCCCEEEECCCCCCCEECCCCCCCCEEEEEEEECCCCCCCCCCCCCC RYSPSSNDILLDTEDGTQSLPGLLALTVRQAHEVLDGLPKVRRKLQTLIDLGLGYLTLGE CCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECC GTPALSGGEAQRLKLASELGRDQSGTLFVLDEPSVGLHPLDTQVLIGVLDRLLAKGATIV CCCCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCEEE LVEHDLELIANADHVIDMGPGGGTAGGRIIASGTPEHIAASTDSITGRYLRVGPCR EEECCHHHHCCCCCEEEECCCCCCCCCEEEECCCCHHHCCCCCCCCCCEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: Hydrolase; Acting on ester bonds [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8675016 [H]