Click here to switch to the map view.

The map label for this gene is ylbK [H]

Identifier: 119716316

GI number: 119716316

Start: 2227699

End: 2228643

Strand: Direct

Name: ylbK [H]

Synonym: Noca_2085

Alternate gene names: 119716316

Gene position: 2227699-2228643 (Clockwise)

Preceding gene: 119716315

Following gene: 119716318

Centisome position: 44.68

GC content: 71.96

Gene sequence:

>945_bases
ATGACCACTGCGTTCGTGCTCTCCGGCGGCGCCAACCTCGGCGCTGCCCAGGTTGGCATGCTGGCCGCGCTGGACGAGGC
CGGTGTGATCGCCGACCTGGTGGTCGGCAGCTCGGTCGGTGCGGTGAACGGGGCCTGGGTGGCCGGCCACGGGGACCTCG
CGGCACTGGGCGACGTCTGGCGCTCGCTCCGGCGCGCCGATGTCTTCCCGGCCCGGCCGCTCGACGGCCTGCTCGGATTC
GTCGGGATGAGCGATCATCTGGTCAGCGACCGTGGTCTGCGGCGCCTCCTGCGTGCCCATCTGCGGTTCGACCGGCTGGA
GGACGCCGCCGTGCCGCTGCACGTGGTCGCCACCGACATCAGGAGCGGGGAGGACGTGCTGCTCTCGACCGGTGACGCCG
TCGACGCCATCCTGGCCAGCGCGGCCATCCCGGGGGTGCTCCCGCCCGTGGCGGTCGACGGGCGCACTCTGGTCGACGGC
GGCGTGGTCAACAACGCCCCGATCTCCCATGCTCTCGATCTGGGTGCCGGGACGATCTGGGTGCTCGCGACCGGATACTC
GTGCGCGCTCGAGCACCCACCGGGCAGTGCCCTGGCTGTCGCCCTGCAGGCGGCCAGCCTGATGATCCACCAGAGGCTGC
TGCGCGACGTGGAGCGGTACGCCGGCGCGATCGACCTGCGCGTGGTTCCGCCGTTGTGCCCCATCTCGGTGGGACCCACG
GACTTCAGCCAGGCCGACGACCTGATCAGGCGGGCACACGAACATGCCCGGGCCTGGCTCGAGCACGGGGAGCGCGGCAC
GTGGGTGAGCGCGCACACGGACCACCAGCCCGAGGAGCGCTTCTCTCCGGGACAGCCCATGACCCGGAGAGCTGACGCGC
CACGCCTCGACAATCACCTCTCCGCGGACGAACCGGTTTCGGCGATGCGGCCGTCGGGCGCCTGA

Upstream 100 bases:

>100_bases
TAACGCACACTGTCATCGAGGTGACACTCCGTCATGGGTCCGTGCTCGTCCCGGACTTCTCCAGGCAAGCCCGGAGCCCA
CCCGGGGGAGGAGTTGCGCC

Downstream 100 bases:

>100_bases
CCGCCATCTCGAAGTGTCTGTTGTCGGAGTACGACCATCGCCGACCCGTCGGCGACCGCGCTCACAGAAGGCGCCAGCGT
CACTCCGTAGTCTCGTGTCG

Product: patatin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 314; Mature: 313

Protein sequence:

>314_residues
MTTAFVLSGGANLGAAQVGMLAALDEAGVIADLVVGSSVGAVNGAWVAGHGDLAALGDVWRSLRRADVFPARPLDGLLGF
VGMSDHLVSDRGLRRLLRAHLRFDRLEDAAVPLHVVATDIRSGEDVLLSTGDAVDAILASAAIPGVLPPVAVDGRTLVDG
GVVNNAPISHALDLGAGTIWVLATGYSCALEHPPGSALAVALQAASLMIHQRLLRDVERYAGAIDLRVVPPLCPISVGPT
DFSQADDLIRRAHEHARAWLEHGERGTWVSAHTDHQPEERFSPGQPMTRRADAPRLDNHLSADEPVSAMRPSGA

Sequences:

>Translated_314_residues
MTTAFVLSGGANLGAAQVGMLAALDEAGVIADLVVGSSVGAVNGAWVAGHGDLAALGDVWRSLRRADVFPARPLDGLLGF
VGMSDHLVSDRGLRRLLRAHLRFDRLEDAAVPLHVVATDIRSGEDVLLSTGDAVDAILASAAIPGVLPPVAVDGRTLVDG
GVVNNAPISHALDLGAGTIWVLATGYSCALEHPPGSALAVALQAASLMIHQRLLRDVERYAGAIDLRVVPPLCPISVGPT
DFSQADDLIRRAHEHARAWLEHGERGTWVSAHTDHQPEERFSPGQPMTRRADAPRLDNHLSADEPVSAMRPSGA
>Mature_313_residues
TTAFVLSGGANLGAAQVGMLAALDEAGVIADLVVGSSVGAVNGAWVAGHGDLAALGDVWRSLRRADVFPARPLDGLLGFV
GMSDHLVSDRGLRRLLRAHLRFDRLEDAAVPLHVVATDIRSGEDVLLSTGDAVDAILASAAIPGVLPPVAVDGRTLVDGG
VVNNAPISHALDLGAGTIWVLATGYSCALEHPPGSALAVALQAASLMIHQRLLRDVERYAGAIDLRVVPPLCPISVGPTD
FSQADDLIRRAHEHARAWLEHGERGTWVSAHTDHQPEERFSPGQPMTRRADAPRLDNHLSADEPVSAMRPSGA

Specific function: Unknown

COG id: COG1752

COG function: function code R; Predicted esterase of the alpha-beta hydrolase superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 patatin domain [H]

Homologues:

Organism=Homo sapiens, GI260656041, Length=187, Percent_Identity=31.5508021390374, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI116256487, Length=187, Percent_Identity=31.5508021390374, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI260656039, Length=187, Percent_Identity=31.5508021390374, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI260656037, Length=187, Percent_Identity=31.5508021390374, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI260656043, Length=187, Percent_Identity=31.5508021390374, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI148727335, Length=191, Percent_Identity=28.7958115183246, Blast_Score=75, Evalue=1e-13,
Organism=Homo sapiens, GI148727290, Length=191, Percent_Identity=28.7958115183246, Blast_Score=74, Evalue=1e-13,
Organism=Escherichia coli, GI226510936, Length=179, Percent_Identity=31.8435754189944, Blast_Score=73, Evalue=2e-14,
Organism=Saccharomyces cerevisiae, GI6323581, Length=183, Percent_Identity=27.3224043715847, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016035
- InterPro:   IPR001423
- InterPro:   IPR002641 [H]

Pfam domain/function: PF01734 Patatin [H]

EC number: NA

Molecular weight: Translated: 32905; Mature: 32773

Theoretical pI: Translated: 5.68; Mature: 5.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTAFVLSGGANLGAAQVGMLAALDEAGVIADLVVGSSVGAVNGAWVAGHGDLAALGDVW
CCEEEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCEEEECCCCHHHHHHHH
RSLRRADVFPARPLDGLLGFVGMSDHLVSDRGLRRLLRAHLRFDRLEDAAVPLHVVATDI
HHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECC
RSGEDVLLSTGDAVDAILASAAIPGVLPPVAVDGRTLVDGGVVNNAPISHALDLGAGTIW
CCCCEEEEECCHHHHHHHHHHCCCCCCCCCEECCCEEECCCCCCCCCHHHHHHCCCCEEE
VLATGYSCALEHPPGSALAVALQAASLMIHQRLLRDVERYAGAIDLRVVPPLCPISVGPT
EEEECCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCC
DFSQADDLIRRAHEHARAWLEHGERGTWVSAHTDHQPEERFSPGQPMTRRADAPRLDNHL
CHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHCCCCCCCHHCCCCCCCCCCC
SADEPVSAMRPSGA
CCCCCHHCCCCCCC
>Mature Secondary Structure 
TTAFVLSGGANLGAAQVGMLAALDEAGVIADLVVGSSVGAVNGAWVAGHGDLAALGDVW
CEEEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCEEEECCCCHHHHHHHH
RSLRRADVFPARPLDGLLGFVGMSDHLVSDRGLRRLLRAHLRFDRLEDAAVPLHVVATDI
HHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECC
RSGEDVLLSTGDAVDAILASAAIPGVLPPVAVDGRTLVDGGVVNNAPISHALDLGAGTIW
CCCCEEEEECCHHHHHHHHHHCCCCCCCCCEECCCEEECCCCCCCCCHHHHHHCCCCEEE
VLATGYSCALEHPPGSALAVALQAASLMIHQRLLRDVERYAGAIDLRVVPPLCPISVGPT
EEEECCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCC
DFSQADDLIRRAHEHARAWLEHGERGTWVSAHTDHQPEERFSPGQPMTRRADAPRLDNHL
CHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHCCCCCCCHHCCCCCCCCCCC
SADEPVSAMRPSGA
CCCCCHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]