Click here to switch to the map view.

The map label for this gene is dedA [C]

Identifier: 119716291

GI number: 119716291

Start: 2203734

End: 2204453

Strand: Direct

Name: dedA [C]

Synonym: Noca_2060

Alternate gene names: 119716291

Gene position: 2203734-2204453 (Clockwise)

Preceding gene: 119716290

Following gene: 119716292

Centisome position: 44.2

GC content: 75.83

Gene sequence:

>720_bases
ATGACCGGCATCGTCGAGCACCTGCTCGCGCTGCCGGTCTGGCTCGGACTGCTGGTGGTCTTCGCGCTGCCGGCCCTGGA
GTCCTCCGCGTTCGTCGGGTTCGTCTTCCCCGGCGAGATCGCGGTGCTGCTCGGCGGCGTGGCCGCCGGCCAGGGGCACC
TGCCGCTCGCGGCGGTGCTCGGCGCGGCGATCGGCGGGGCGGCCGTGGGCGATGCCGTCGGCTACCTGGTCGGGCAGCGG
TGGGGACGCCGGATCCTCGACTCGACGGTGGGTCGCCTGGTCCGGGCCGAGCACCTCGACCGCGCTGCGGATCTGCTCGC
GCGCCGCGGCGGGCCGGCGGTCTTCATCGGCCGGTTCACGGTCGCCCTGCGGGTCCTGGTCCCGGGCCTGGCCGGGATGG
CCCGGATGCCCTATCGGACGTTCGCCCTGTTCAACATCGCGGGCGCCGCGGCCTGGGCGAGCGCCGTCGCCCTCGCCGGG
TACCTGGCGGGCAACAACTGGCACGTCGTCGAGCACGTCATCTCGGGCGTCGGGATCGGCCTGGCGGTCCTCATCGTCGC
GGGCCTGCTCGGCGTGCACCTCGCGCGCCGGCGCGGGCTCGGCCGCCACCGGGTCCGCCTTCATCGGCCCTTCATCCGCC
GCGGCCTACGGTCGCCGCGTGTCCAGCCCCGGGTCCGTCACCGCACCCCCGGTCGCCGAGCGAGGTCCTCGACCGGGTGA

Upstream 100 bases:

>100_bases
CGTCGTACCTGCTCGCCCGCCCGGTCGTCCGACCCCTCGTCGCCTGGCTCGCGGACACTCCACTGCGTCCGCTCGTCAGC
CTGCCGCCGGTGGCGACCCG

Downstream 100 bases:

>100_bases
GCCCCGCACCGTCCTCGGGTGGAGCCGAGCCGGCGCCGCCGTCCTGCTCCTCGCCGCCGCTGCTGCGTTCGCTGCCTGGC
TGCCGTTCCTGCACGTCCCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 239; Mature: 238

Protein sequence:

>239_residues
MTGIVEHLLALPVWLGLLVVFALPALESSAFVGFVFPGEIAVLLGGVAAGQGHLPLAAVLGAAIGGAAVGDAVGYLVGQR
WGRRILDSTVGRLVRAEHLDRAADLLARRGGPAVFIGRFTVALRVLVPGLAGMARMPYRTFALFNIAGAAAWASAVALAG
YLAGNNWHVVEHVISGVGIGLAVLIVAGLLGVHLARRRGLGRHRVRLHRPFIRRGLRSPRVQPRVRHRTPGRRARSSTG

Sequences:

>Translated_239_residues
MTGIVEHLLALPVWLGLLVVFALPALESSAFVGFVFPGEIAVLLGGVAAGQGHLPLAAVLGAAIGGAAVGDAVGYLVGQR
WGRRILDSTVGRLVRAEHLDRAADLLARRGGPAVFIGRFTVALRVLVPGLAGMARMPYRTFALFNIAGAAAWASAVALAG
YLAGNNWHVVEHVISGVGIGLAVLIVAGLLGVHLARRRGLGRHRVRLHRPFIRRGLRSPRVQPRVRHRTPGRRARSSTG
>Mature_238_residues
TGIVEHLLALPVWLGLLVVFALPALESSAFVGFVFPGEIAVLLGGVAAGQGHLPLAAVLGAAIGGAAVGDAVGYLVGQRW
GRRILDSTVGRLVRAEHLDRAADLLARRGGPAVFIGRFTVALRVLVPGLAGMARMPYRTFALFNIAGAAAWASAVALAGY
LAGNNWHVVEHVISGVGIGLAVLIVAGLLGVHLARRRGLGRHRVRLHRPFIRRGLRSPRVQPRVRHRTPGRRARSSTG

Specific function: Unknown

COG id: COG0586

COG function: function code S; Uncharacterized membrane-associated protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dedA family [H]

Homologues:

Organism=Escherichia coli, GI1788656, Length=153, Percent_Identity=29.4117647058824, Blast_Score=78, Evalue=5e-16,
Organism=Escherichia coli, GI87082056, Length=136, Percent_Identity=36.0294117647059, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1786252, Length=166, Percent_Identity=31.3253012048193, Blast_Score=65, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 25178; Mature: 25047

Theoretical pI: Translated: 12.59; Mature: 12.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGIVEHLLALPVWLGLLVVFALPALESSAFVGFVFPGEIAVLLGGVAAGQGHLPLAAVL
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCCCHHHHHH
GAAIGGAAVGDAVGYLVGQRWGRRILDSTVGRLVRAEHLDRAADLLARRGGPAVFIGRFT
HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHH
VALRVLVPGLAGMARMPYRTFALFNIAGAAAWASAVALAGYLAGNNWHVVEHVISGVGIG
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
LAVLIVAGLLGVHLARRRGLGRHRVRLHRPFIRRGLRSPRVQPRVRHRTPGRRARSSTG
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
TGIVEHLLALPVWLGLLVVFALPALESSAFVGFVFPGEIAVLLGGVAAGQGHLPLAAVL
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCCCHHHHHH
GAAIGGAAVGDAVGYLVGQRWGRRILDSTVGRLVRAEHLDRAADLLARRGGPAVFIGRFT
HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHH
VALRVLVPGLAGMARMPYRTFALFNIAGAAAWASAVALAGYLAGNNWHVVEHVISGVGIG
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
LAVLIVAGLLGVHLARRRGLGRHRVRLHRPFIRRGLRSPRVQPRVRHRTPGRRARSSTG
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]