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The map label for this gene is nodB [H]

Identifier: 119716288

GI number: 119716288

Start: 2201126

End: 2201884

Strand: Reverse

Name: nodB [H]

Synonym: Noca_2057

Alternate gene names: 119716288

Gene position: 2201884-2201126 (Counterclockwise)

Preceding gene: 119716289

Following gene: 119716287

Centisome position: 44.16

GC content: 77.21

Gene sequence:

>759_bases
ATGAGGGGCGCCCGGATCGCGACGCTCGCGACGCTGTCAGCGGCGGGCGCGTGGGCCGGTCCGGCGGCCACCGCCATCGG
GCCGCTGCGCCGCCCGGTGCTCCCCCTCCTGAGCGGCATCGGGCCGTCCCTGCACGTCGCGCTCACCTACGACGACGGTC
CGGACCCCGAGAGCACGCCGCACGTCCTCGACGTACTGGCCCGGCACGGGCGGCGCGCCACGTTCTTCGTGGTCGGCGAG
CAGGTCCGGGCGAGCGCCGCGATCCTGCGGCGGATGGTCGCCGAGGGCCACGAGGTCGCGGTGCACGGCTGGACCCACCG
GTGCGTCGCGCTGGTGCCGCCGACCCGGCTGGTGCACCAGCTCGCGGCCGCTCGGACCGTGGTCGAGGACACGACCGGCG
TCTCGCCGACGTGGTACCGGCCGCCGTACGGCGTCCTCACGGGCGACGCGATCCGCGCCTGCCGGACGCTCGGCCTGACC
CCGGTGCTGTGGAGCGCCTGGGGCCGGGACTGGATCCGGAGGACCACACCGGAGCGGATCGTCGCGACGGTGCTCGCGAC
CCTGCGGCCCGGCGGGACCGTCCTCCTGCACGACACCGACCGGCACGCCCGCGGCGACTGGGGGCCGACCCTGGCCGCCA
CCGACCTGCTGCTGTCCGGCGCCCTCGCCGAGGCGGACGTGGGGCCGCTGGCCGAGCACGGGATCTCGCGCGAACCCGCG
CCGGCACGCCGCGTCCCCGTCGGTAGGTTTGCCGGGTGA

Upstream 100 bases:

>100_bases
CGGCGGCCGTCGCCGTCCGCACCGACCGGCTCCCCGCCGAGGCCCCGGAGGTCGTCGCGGTGCTGGCCGGTGCCGCCGAC
GCGACGCCGGTCGCCGTCGC

Downstream 100 bases:

>100_bases
CCTCACCCGAACCGGTCGAGCCGACCCGCCTCGATGCGCGGCAGCTGCGGCGCGCCGTGCTGGTGGTCGCCGGCCTGAAC
TTCTCCTACTTCTTCGTCGA

Product: polysaccharide deacetylase

Products: NA

Alternate protein names: Nodulation protein B [H]

Number of amino acids: Translated: 252; Mature: 252

Protein sequence:

>252_residues
MRGARIATLATLSAAGAWAGPAATAIGPLRRPVLPLLSGIGPSLHVALTYDDGPDPESTPHVLDVLARHGRRATFFVVGE
QVRASAAILRRMVAEGHEVAVHGWTHRCVALVPPTRLVHQLAAARTVVEDTTGVSPTWYRPPYGVLTGDAIRACRTLGLT
PVLWSAWGRDWIRRTTPERIVATVLATLRPGGTVLLHDTDRHARGDWGPTLAATDLLLSGALAEADVGPLAEHGISREPA
PARRVPVGRFAG

Sequences:

>Translated_252_residues
MRGARIATLATLSAAGAWAGPAATAIGPLRRPVLPLLSGIGPSLHVALTYDDGPDPESTPHVLDVLARHGRRATFFVVGE
QVRASAAILRRMVAEGHEVAVHGWTHRCVALVPPTRLVHQLAAARTVVEDTTGVSPTWYRPPYGVLTGDAIRACRTLGLT
PVLWSAWGRDWIRRTTPERIVATVLATLRPGGTVLLHDTDRHARGDWGPTLAATDLLLSGALAEADVGPLAEHGISREPA
PARRVPVGRFAG
>Mature_252_residues
MRGARIATLATLSAAGAWAGPAATAIGPLRRPVLPLLSGIGPSLHVALTYDDGPDPESTPHVLDVLARHGRRATFFVVGE
QVRASAAILRRMVAEGHEVAVHGWTHRCVALVPPTRLVHQLAAARTVVEDTTGVSPTWYRPPYGVLTGDAIRACRTLGLT
PVLWSAWGRDWIRRTTPERIVATVLATLRPGGTVLLHDTDRHARGDWGPTLAATDLLLSGALAEADVGPLAEHGISREPA
PARRVPVGRFAG

Specific function: Is involved in generating a small heat-stable compound (Nod), an acylated oligomer of N-acetylglucosamine, that stimulates mitosis in various plant protoplasts [H]

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6323339, Length=160, Percent_Identity=29.375, Blast_Score=77, Evalue=2e-15,
Organism=Saccharomyces cerevisiae, GI6323338, Length=168, Percent_Identity=25.5952380952381, Blast_Score=68, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR002509 [H]

Pfam domain/function: PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 26767; Mature: 26767

Theoretical pI: Translated: 10.79; Mature: 10.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRGARIATLATLSAAGAWAGPAATAIGPLRRPVLPLLSGIGPSLHVALTYDDGPDPESTP
CCCCEEHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCH
HVLDVLARHGRRATFFVVGEQVRASAAILRRMVAEGHEVAVHGWTHRCVALVPPTRLVHQ
HHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCEEEEECCCCEEEEECCHHHHHHH
LAAARTVVEDTTGVSPTWYRPPYGVLTGDAIRACRTLGLTPVLWSAWGRDWIRRTTPERI
HHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHH
VATVLATLRPGGTVLLHDTDRHARGDWGPTLAATDLLLSGALAEADVGPLAEHGISREPA
HHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCC
PARRVPVGRFAG
CCCCCCCCCCCC
>Mature Secondary Structure
MRGARIATLATLSAAGAWAGPAATAIGPLRRPVLPLLSGIGPSLHVALTYDDGPDPESTP
CCCCEEHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCH
HVLDVLARHGRRATFFVVGEQVRASAAILRRMVAEGHEVAVHGWTHRCVALVPPTRLVHQ
HHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCEEEEECCCCEEEEECCHHHHHHH
LAAARTVVEDTTGVSPTWYRPPYGVLTGDAIRACRTLGLTPVLWSAWGRDWIRRTTPERI
HHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHH
VATVLATLRPGGTVLLHDTDRHARGDWGPTLAATDLLLSGALAEADVGPLAEHGISREPA
HHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCC
PARRVPVGRFAG
CCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3960737 [H]