| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
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The map label for this gene is natA [H]
Identifier: 119716184
GI number: 119716184
Start: 2083807
End: 2084454
Strand: Direct
Name: natA [H]
Synonym: Noca_1952
Alternate gene names: 119716184
Gene position: 2083807-2084454 (Clockwise)
Preceding gene: 119716181
Following gene: 119716185
Centisome position: 41.79
GC content: 74.69
Gene sequence:
>648_bases GTGGGCGTGATCCAGCTGCGGCGGGTGGCCCGCCTCTTCGACGGGATGCCCGCGATCACCCAGGTCGACCTCGAGGTCCA GCGCGGGGAGCGGATCTGGCTCTCGGGCACCAACGGGTCGGGCAAGTCGACGCTGCTGCGGGTCGTGGCGACCGCGCTGT CACCGACCTTCGGCAGCGGGACGGTCTGCGGCCTGGACCTCGTCCGGCAGCGCGCCGCGGTGCGGGCCCGGATCGAGCTG CTCGGCCACGAGCCGCGGTTCTACCGCGAGCTGTCCGCCCGGGAGAACCTCCGGTTCGTCTGCTCGCTCACCCGCGCCGA CCCCGCCCGCATCGACGGCGCGCTCGAGCGCGTCGGCCTGGTCGAGGTCGCCGACGTTCGCTTCGCGAGCTTCTCCCAGG GCATGCGCCAGCGGCTCGCCCTCGCCCGCTGCATCGTGCGTGAGCCCGAGGTGGTGCTGCTCGACGAGCCGTACGCCGGC CTCGACGAGGACGCGCGCTCGGTGGTCGACGACGTGCTCGTCGAGGCGCGCGGGTGCGGGCGCACCGTGCTCCTGGCCAG TCACGAGCAGCCGCCCACCGGCCTGGTGGACCGGCGCGTCGTCATGGACGCGGGCCGGGTGGTCGCGCACGACGGAGCGC TGCGGTGA
Upstream 100 bases:
>100_bases GGTCGGCAAGGGTGGACGAGAGCACCGTTGACGCGGGGCGCCGAGCCACCTACCGTCTCTCTAATGTTCAACTAGATTTA TTTTAGAATGGAGGCTCGGC
Downstream 100 bases:
>100_bases CCGGCGGCGCGGTGTGGGCGGTCGCCGGCAAGGACCTGCGGGCCGAGGCGCGCAGCAAGTACGCCCTCGGCTCGGTGCTG CCGTTCGCCGCGACCATGCT
Product: ABC transporter-like protein
Products: NA
Alternate protein names: Na(+) ABC transporter [H]
Number of amino acids: Translated: 215; Mature: 214
Protein sequence:
>215_residues MGVIQLRRVARLFDGMPAITQVDLEVQRGERIWLSGTNGSGKSTLLRVVATALSPTFGSGTVCGLDLVRQRAAVRARIEL LGHEPRFYRELSARENLRFVCSLTRADPARIDGALERVGLVEVADVRFASFSQGMRQRLALARCIVREPEVVLLDEPYAG LDEDARSVVDDVLVEARGCGRTVLLASHEQPPTGLVDRRVVMDAGRVVAHDGALR
Sequences:
>Translated_215_residues MGVIQLRRVARLFDGMPAITQVDLEVQRGERIWLSGTNGSGKSTLLRVVATALSPTFGSGTVCGLDLVRQRAAVRARIEL LGHEPRFYRELSARENLRFVCSLTRADPARIDGALERVGLVEVADVRFASFSQGMRQRLALARCIVREPEVVLLDEPYAG LDEDARSVVDDVLVEARGCGRTVLLASHEQPPTGLVDRRVVMDAGRVVAHDGALR >Mature_214_residues GVIQLRRVARLFDGMPAITQVDLEVQRGERIWLSGTNGSGKSTLLRVVATALSPTFGSGTVCGLDLVRQRAAVRARIELL GHEPRFYRELSARENLRFVCSLTRADPARIDGALERVGLVEVADVRFASFSQGMRQRLALARCIVREPEVVLLDEPYAGL DEDARSVVDDVLVEARGCGRTVLLASHEQPPTGLVDRRVVMDAGRVVAHDGALR
Specific function: Involved in ATP-dependent electrogenic sodium extrusion [H]
COG id: COG1131
COG function: function code V; ABC-type multidrug transport system, ATPase component
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI150417984, Length=212, Percent_Identity=30.6603773584906, Blast_Score=87, Evalue=2e-17, Organism=Homo sapiens, GI105990541, Length=209, Percent_Identity=26.7942583732057, Blast_Score=86, Evalue=2e-17, Organism=Homo sapiens, GI45446740, Length=213, Percent_Identity=29.5774647887324, Blast_Score=85, Evalue=4e-17, Organism=Homo sapiens, GI47078218, Length=213, Percent_Identity=29.5774647887324, Blast_Score=85, Evalue=4e-17, Organism=Homo sapiens, GI4505771, Length=213, Percent_Identity=27.2300469483568, Blast_Score=84, Evalue=6e-17, Organism=Homo sapiens, GI9961252, Length=213, Percent_Identity=27.2300469483568, Blast_Score=84, Evalue=8e-17, Organism=Homo sapiens, GI9961250, Length=220, Percent_Identity=27.7272727272727, Blast_Score=84, Evalue=1e-16, Organism=Homo sapiens, GI42741659, Length=213, Percent_Identity=28.169014084507, Blast_Score=83, Evalue=1e-16, Organism=Homo sapiens, GI153792144, Length=218, Percent_Identity=27.9816513761468, Blast_Score=80, Evalue=1e-15, Organism=Homo sapiens, GI255708477, Length=223, Percent_Identity=28.6995515695067, Blast_Score=79, Evalue=4e-15, Organism=Homo sapiens, GI148612844, Length=223, Percent_Identity=28.6995515695067, Blast_Score=78, Evalue=6e-15, Organism=Homo sapiens, GI116734710, Length=213, Percent_Identity=24.8826291079812, Blast_Score=78, Evalue=7e-15, Organism=Homo sapiens, GI21536376, Length=201, Percent_Identity=25.8706467661692, Blast_Score=76, Evalue=2e-14, Organism=Homo sapiens, GI31657092, Length=212, Percent_Identity=26.4150943396226, Blast_Score=76, Evalue=3e-14, Organism=Homo sapiens, GI27477115, Length=216, Percent_Identity=26.8518518518519, Blast_Score=72, Evalue=3e-13, Organism=Homo sapiens, GI27436953, Length=216, Percent_Identity=25.462962962963, Blast_Score=71, Evalue=8e-13, Organism=Homo sapiens, GI27262624, Length=201, Percent_Identity=24.8756218905473, Blast_Score=68, Evalue=8e-12, Organism=Homo sapiens, GI27262626, Length=201, Percent_Identity=24.8756218905473, Blast_Score=68, Evalue=8e-12, Organism=Homo sapiens, GI62526033, Length=193, Percent_Identity=28.4974093264249, Blast_Score=67, Evalue=9e-12, Organism=Homo sapiens, GI171184400, Length=213, Percent_Identity=27.2300469483568, Blast_Score=67, Evalue=9e-12, Organism=Homo sapiens, GI27881501, Length=203, Percent_Identity=22.6600985221675, Blast_Score=65, Evalue=3e-11, Organism=Homo sapiens, GI30795238, Length=203, Percent_Identity=22.6600985221675, Blast_Score=65, Evalue=3e-11, Organism=Homo sapiens, GI11967969, Length=209, Percent_Identity=27.7511961722488, Blast_Score=65, Evalue=4e-11, Organism=Homo sapiens, GI21536378, Length=199, Percent_Identity=26.1306532663317, Blast_Score=65, Evalue=6e-11, Organism=Escherichia coli, GI87081782, Length=214, Percent_Identity=30.3738317757009, Blast_Score=99, Evalue=3e-22, Organism=Escherichia coli, GI48994943, Length=211, Percent_Identity=30.3317535545024, Blast_Score=98, Evalue=5e-22, Organism=Escherichia coli, GI1789864, Length=224, Percent_Identity=31.25, Blast_Score=90, Evalue=9e-20, Organism=Escherichia coli, GI87081791, Length=212, Percent_Identity=29.7169811320755, Blast_Score=89, Evalue=3e-19, Organism=Escherichia coli, GI1786253, Length=211, Percent_Identity=29.3838862559242, Blast_Score=87, Evalue=6e-19, Organism=Escherichia coli, GI1789672, Length=216, Percent_Identity=29.6296296296296, Blast_Score=87, Evalue=8e-19, Organism=Escherichia coli, GI1788761, Length=219, Percent_Identity=30.1369863013699, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1787029, Length=235, Percent_Identity=29.7872340425532, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1790467, Length=213, Percent_Identity=30.5164319248826, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1788225, Length=228, Percent_Identity=28.9473684210526, Blast_Score=86, Evalue=1e-18, Organism=Escherichia coli, GI87081709, Length=213, Percent_Identity=30.0469483568075, Blast_Score=83, Evalue=1e-17, Organism=Escherichia coli, GI1786872, Length=216, Percent_Identity=35.1851851851852, Blast_Score=83, Evalue=1e-17, Organism=Escherichia coli, GI1790544, Length=209, Percent_Identity=30.622009569378, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI1787370, Length=219, Percent_Identity=30.1369863013699, Blast_Score=81, Evalue=4e-17, Organism=Escherichia coli, GI87081834, Length=201, Percent_Identity=31.3432835820896, Blast_Score=80, Evalue=7e-17, Organism=Escherichia coli, GI1788450, Length=224, Percent_Identity=29.0178571428571, Blast_Score=79, Evalue=2e-16, Organism=Escherichia coli, GI1789873, Length=206, Percent_Identity=28.1553398058252, Blast_Score=79, Evalue=2e-16, Organism=Escherichia coli, GI1786698, Length=205, Percent_Identity=27.3170731707317, Blast_Score=77, Evalue=6e-16, Organism=Escherichia coli, GI1786319, Length=213, Percent_Identity=25.8215962441315, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI1787089, Length=223, Percent_Identity=27.3542600896861, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI1789032, Length=201, Percent_Identity=29.3532338308458, Blast_Score=75, Evalue=3e-15, Organism=Escherichia coli, GI1789593, Length=220, Percent_Identity=27.2727272727273, Blast_Score=75, Evalue=3e-15, Organism=Escherichia coli, GI1790525, Length=219, Percent_Identity=27.3972602739726, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI1787712, Length=210, Percent_Identity=27.6190476190476, Blast_Score=71, Evalue=4e-14, Organism=Escherichia coli, GI1788210, Length=218, Percent_Identity=25.6880733944954, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1786703, Length=181, Percent_Identity=33.7016574585635, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI87082064, Length=200, Percent_Identity=26.5, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1787164, Length=204, Percent_Identity=29.4117647058824, Blast_Score=68, Evalue=4e-13, Organism=Escherichia coli, GI1787758, Length=202, Percent_Identity=30.1980198019802, Blast_Score=68, Evalue=4e-13, Organism=Escherichia coli, GI1789962, Length=225, Percent_Identity=29.7777777777778, Blast_Score=68, Evalue=5e-13, Organism=Escherichia coli, GI1790190, Length=213, Percent_Identity=26.2910798122066, Blast_Score=68, Evalue=5e-13, Organism=Escherichia coli, GI1787105, Length=202, Percent_Identity=27.7227722772277, Blast_Score=67, Evalue=7e-13, Organism=Escherichia coli, GI1786563, Length=193, Percent_Identity=29.0155440414508, Blast_Score=67, Evalue=8e-13, Organism=Escherichia coli, GI1786398, Length=224, Percent_Identity=29.0178571428571, Blast_Score=67, Evalue=8e-13, Organism=Escherichia coli, GI1787792, Length=204, Percent_Identity=26.4705882352941, Blast_Score=67, Evalue=9e-13, Organism=Escherichia coli, GI1789991, Length=198, Percent_Identity=24.7474747474747, Blast_Score=67, Evalue=9e-13, Organism=Escherichia coli, GI1788053, Length=179, Percent_Identity=30.1675977653631, Blast_Score=65, Evalue=2e-12, Organism=Escherichia coli, GI145693107, Length=207, Percent_Identity=31.4009661835749, Blast_Score=65, Evalue=5e-12, Organism=Escherichia coli, GI87082267, Length=221, Percent_Identity=30.316742081448, Blast_Score=64, Evalue=5e-12, Organism=Escherichia coli, GI1788506, Length=180, Percent_Identity=28.8888888888889, Blast_Score=64, Evalue=7e-12, Organism=Escherichia coli, GI1789586, Length=204, Percent_Identity=28.4313725490196, Blast_Score=64, Evalue=8e-12, Organism=Escherichia coli, GI1787112, Length=209, Percent_Identity=30.622009569378, Blast_Score=64, Evalue=9e-12, Organism=Escherichia coli, GI1790739, Length=205, Percent_Identity=30.2439024390244, Blast_Score=64, Evalue=9e-12, Organism=Escherichia coli, GI87082268, Length=215, Percent_Identity=26.9767441860465, Blast_Score=63, Evalue=1e-11, Organism=Escherichia coli, GI1789891, Length=204, Percent_Identity=30.8823529411765, Blast_Score=62, Evalue=2e-11, Organism=Escherichia coli, GI48994997, Length=224, Percent_Identity=26.7857142857143, Blast_Score=62, Evalue=3e-11, Organism=Escherichia coli, GI1787143, Length=220, Percent_Identity=25.4545454545455, Blast_Score=60, Evalue=8e-11, Organism=Caenorhabditis elegans, GI71983523, Length=217, Percent_Identity=30.8755760368664, Blast_Score=91, Evalue=3e-19, Organism=Caenorhabditis elegans, GI71983516, Length=217, Percent_Identity=30.8755760368664, Blast_Score=91, Evalue=3e-19, Organism=Caenorhabditis elegans, GI71983510, Length=217, Percent_Identity=30.8755760368664, Blast_Score=91, Evalue=3e-19, Organism=Caenorhabditis elegans, GI115533608, Length=211, Percent_Identity=28.436018957346, Blast_Score=89, Evalue=2e-18, Organism=Caenorhabditis elegans, GI193202349, Length=202, Percent_Identity=30.1980198019802, Blast_Score=84, Evalue=6e-17, Organism=Caenorhabditis elegans, GI71992290, Length=219, Percent_Identity=26.9406392694064, Blast_Score=84, Evalue=8e-17, Organism=Caenorhabditis elegans, GI212646699, Length=208, Percent_Identity=28.8461538461538, Blast_Score=83, Evalue=1e-16, Organism=Caenorhabditis elegans, GI17510237, Length=216, Percent_Identity=30.0925925925926, Blast_Score=81, Evalue=5e-16, Organism=Caenorhabditis elegans, GI193211015, Length=199, Percent_Identity=29.6482412060301, Blast_Score=80, Evalue=7e-16, Organism=Caenorhabditis elegans, GI71996809, Length=199, Percent_Identity=29.6482412060301, Blast_Score=80, Evalue=7e-16, Organism=Caenorhabditis elegans, GI193211017, Length=199, Percent_Identity=29.6482412060301, Blast_Score=80, Evalue=9e-16, Organism=Caenorhabditis elegans, GI115535101, Length=202, Percent_Identity=31.1881188118812, Blast_Score=79, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17565586, Length=193, Percent_Identity=29.0155440414508, Blast_Score=77, Evalue=5e-15, Organism=Caenorhabditis elegans, GI17558664, Length=202, Percent_Identity=29.7029702970297, Blast_Score=77, Evalue=6e-15, Organism=Caenorhabditis elegans, GI17511077, Length=221, Percent_Identity=27.1493212669683, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI17569143, Length=213, Percent_Identity=27.6995305164319, Blast_Score=74, Evalue=5e-14, Organism=Caenorhabditis elegans, GI17567269, Length=204, Percent_Identity=29.9019607843137, Blast_Score=74, Evalue=6e-14, Organism=Caenorhabditis elegans, GI17569145, Length=201, Percent_Identity=27.363184079602, Blast_Score=72, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17567265, Length=202, Percent_Identity=27.7227722772277, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI25146777, Length=202, Percent_Identity=28.2178217821782, Blast_Score=71, Evalue=5e-13, Organism=Caenorhabditis elegans, GI71984940, Length=197, Percent_Identity=27.4111675126904, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17565938, Length=209, Percent_Identity=27.7511961722488, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17541710, Length=206, Percent_Identity=27.1844660194175, Blast_Score=68, Evalue=3e-12, Organism=Caenorhabditis elegans, GI115533592, Length=187, Percent_Identity=30.4812834224599, Blast_Score=68, Evalue=4e-12, Organism=Caenorhabditis elegans, GI193209708, Length=204, Percent_Identity=26.9607843137255, Blast_Score=67, Evalue=7e-12, Organism=Caenorhabditis elegans, GI115534520, Length=222, Percent_Identity=26.1261261261261, Blast_Score=65, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17543740, Length=201, Percent_Identity=25.3731343283582, Blast_Score=65, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17555318, Length=199, Percent_Identity=28.643216080402, Blast_Score=64, Evalue=8e-11, Organism=Saccharomyces cerevisiae, GI6321752, Length=222, Percent_Identity=27.4774774774775, Blast_Score=70, Evalue=2e-13, Organism=Drosophila melanogaster, GI24666092, Length=217, Percent_Identity=27.6497695852535, Blast_Score=87, Evalue=8e-18, Organism=Drosophila melanogaster, GI221512771, Length=210, Percent_Identity=26.6666666666667, Blast_Score=86, Evalue=2e-17, Organism=Drosophila melanogaster, GI24643674, Length=208, Percent_Identity=28.8461538461538, Blast_Score=86, Evalue=3e-17, Organism=Drosophila melanogaster, GI85726357, Length=230, Percent_Identity=27.8260869565217, Blast_Score=84, Evalue=7e-17, Organism=Drosophila melanogaster, GI28573571, Length=213, Percent_Identity=26.7605633802817, Blast_Score=81, Evalue=5e-16, Organism=Drosophila melanogaster, GI28573573, Length=207, Percent_Identity=27.0531400966184, Blast_Score=77, Evalue=8e-15, Organism=Drosophila melanogaster, GI24653245, Length=207, Percent_Identity=28.5024154589372, Blast_Score=75, Evalue=3e-14, Organism=Drosophila melanogaster, GI281363262, Length=207, Percent_Identity=28.5024154589372, Blast_Score=75, Evalue=3e-14, Organism=Drosophila melanogaster, GI24648314, Length=214, Percent_Identity=24.2990654205607, Blast_Score=74, Evalue=8e-14, Organism=Drosophila melanogaster, GI28574150, Length=203, Percent_Identity=26.6009852216749, Blast_Score=70, Evalue=8e-13, Organism=Drosophila melanogaster, GI116007328, Length=203, Percent_Identity=26.6009852216749, Blast_Score=70, Evalue=8e-13, Organism=Drosophila melanogaster, GI24659289, Length=198, Percent_Identity=28.2828282828283, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI17136662, Length=205, Percent_Identity=26.8292682926829, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI24649703, Length=223, Percent_Identity=28.6995515695067, Blast_Score=67, Evalue=9e-12, Organism=Drosophila melanogaster, GI28574744, Length=198, Percent_Identity=28.2828282828283, Blast_Score=65, Evalue=4e-11, Organism=Drosophila melanogaster, GI161077321, Length=199, Percent_Identity=25.6281407035176, Blast_Score=64, Evalue=6e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 23555; Mature: 23423
Theoretical pI: Translated: 8.34; Mature: 8.34
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGVIQLRRVARLFDGMPAITQVDLEVQRGERIWLSGTNGSGKSTLLRVVATALSPTFGSG CCHHHHHHHHHHHCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCC TVCGLDLVRQRAAVRARIELLGHEPRFYRELSARENLRFVCSLTRADPARIDGALERVGL CCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCC VEVADVRFASFSQGMRQRLALARCIVREPEVVLLDEPYAGLDEDARSVVDDVLVEARGCG EEEHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCC RTVLLASHEQPPTGLVDRRVVMDAGRVVAHDGALR CEEEEECCCCCCCCHHHHHHHHHCCCEEECCCCCC >Mature Secondary Structure GVIQLRRVARLFDGMPAITQVDLEVQRGERIWLSGTNGSGKSTLLRVVATALSPTFGSG CHHHHHHHHHHHCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCC TVCGLDLVRQRAAVRARIELLGHEPRFYRELSARENLRFVCSLTRADPARIDGALERVGL CCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCC VEVADVRFASFSQGMRQRLALARCIVREPEVVLLDEPYAGLDEDARSVVDDVLVEARGCG EEEHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCC RTVLLASHEQPPTGLVDRRVVMDAGRVVAHDGALR CEEEEECCCCCCCCHHHHHHHHHCCCEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9106203; 9274031; 9384377 [H]