| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
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The map label for this gene is 119716154
Identifier: 119716154
GI number: 119716154
Start: 2048814
End: 2049614
Strand: Reverse
Name: 119716154
Synonym: Noca_1922
Alternate gene names: NA
Gene position: 2049614-2048814 (Counterclockwise)
Preceding gene: 119716156
Following gene: 119716153
Centisome position: 41.11
GC content: 72.41
Gene sequence:
>801_bases GTGCCGTTGGCCGAGCGCCGCCGTGCCCGCCTGCTCGCCCTCGTCCTCGCGGTGGCGCTGGCGGGTGTCCTGGTCGCGTG CGGCGACAAGGCGGCGCCGGCCGCCGACGAAGCGGCCCCGGACCTCGGTGCCTGCCGCGTGCTCGCCCCCGAGGACGTGG CCGAACCGAGCAACAGCACCACGCCGGTCGAGTGCACCGAGCCGCACACGGCCGAGACCTACGCCGTCGGGCAGCTCCCG AGCACGTTCGACGACGTCGACTACGACGACGAGGGCCTCGGCTCCTGGGCCTACGAGACCTGCTCCAAGGCGTTCATGGA CTTCCTCGGTGCCGACGAGAGCCTGGTGATGCGCACCGTGGTCAGCTGGGCGTGGTTCCGGCCGAGCGAGGACGCCTGGG CGGACGGCGCACGGTGGTACCGCTGCGACGTGGTCGGCGGCGGCGAGCAGAGCAGGGAGTACGTCGACCTGCCCACCACC GCCAAGGGCCTGCTGCTCGGGCGCCCCAAGGACGAGTGGATGGTCTGCGCGGACGGGCCGACGGTCGCCGGTTCGGTGAA GGTCGCGTGCACCGAGCCACACCTGTGGCGCGCGGTGACCACCATCGCCCTCGGCGACCAGGGCGACGCGTACCCGGGCG ACCGGGTCGTCGAGGTCACCACCCGCGACTTCTGCTCCAAGTCGGTCGGCGCGTGGCTGAACTACCCGGTCGACTACGAC TTCGGCTACACCTGGTTCCACCAGGCGGAGTGGGACGCCGGCAACCGCCGCTCGGTCTGCTGGGCGAAGACCGACCAGTG A
Upstream 100 bases:
>100_bases TACCCCATCCGTCCCGGATCACTACGCCGGGGGCCCGGGAGGTGGATCCCCGGCGGTACGATCGCGCGGACCCTGGGCCC GCACCCTGCGAGGAGGAACC
Downstream 100 bases:
>100_bases GCCGACCAGCGACTCGCTCGCTGACCTCCCGCGCGCTGGCCGTCGGTCTGGCGGTGGGCGTGGTCGCCGGGCTCGTGGTC CTGGCGGGCTGCAGCGGCGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 266; Mature: 265
Protein sequence:
>266_residues MPLAERRRARLLALVLAVALAGVLVACGDKAAPAADEAAPDLGACRVLAPEDVAEPSNSTTPVECTEPHTAETYAVGQLP STFDDVDYDDEGLGSWAYETCSKAFMDFLGADESLVMRTVVSWAWFRPSEDAWADGARWYRCDVVGGGEQSREYVDLPTT AKGLLLGRPKDEWMVCADGPTVAGSVKVACTEPHLWRAVTTIALGDQGDAYPGDRVVEVTTRDFCSKSVGAWLNYPVDYD FGYTWFHQAEWDAGNRRSVCWAKTDQ
Sequences:
>Translated_266_residues MPLAERRRARLLALVLAVALAGVLVACGDKAAPAADEAAPDLGACRVLAPEDVAEPSNSTTPVECTEPHTAETYAVGQLP STFDDVDYDDEGLGSWAYETCSKAFMDFLGADESLVMRTVVSWAWFRPSEDAWADGARWYRCDVVGGGEQSREYVDLPTT AKGLLLGRPKDEWMVCADGPTVAGSVKVACTEPHLWRAVTTIALGDQGDAYPGDRVVEVTTRDFCSKSVGAWLNYPVDYD FGYTWFHQAEWDAGNRRSVCWAKTDQ >Mature_265_residues PLAERRRARLLALVLAVALAGVLVACGDKAAPAADEAAPDLGACRVLAPEDVAEPSNSTTPVECTEPHTAETYAVGQLPS TFDDVDYDDEGLGSWAYETCSKAFMDFLGADESLVMRTVVSWAWFRPSEDAWADGARWYRCDVVGGGEQSREYVDLPTTA KGLLLGRPKDEWMVCADGPTVAGSVKVACTEPHLWRAVTTIALGDQGDAYPGDRVVEVTTRDFCSKSVGAWLNYPVDYDF GYTWFHQAEWDAGNRRSVCWAKTDQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29000; Mature: 28869
Theoretical pI: Translated: 4.20; Mature: 4.20
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.4 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 3.4 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPLAERRRARLLALVLAVALAGVLVACGDKAAPAADEAAPDLGACRVLAPEDVAEPSNST CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCHHHCCCCCCC TPVECTEPHTAETYAVGQLPSTFDDVDYDDEGLGSWAYETCSKAFMDFLGADESLVMRTV CCEEECCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHH VSWAWFRPSEDAWADGARWYRCDVVGGGEQSREYVDLPTTAKGLLLGRPKDEWMVCADGP HHHHHCCCCCCCCCCCCEEEEEEEECCCCCCCEEECCCCCCCCEEEECCCCCEEEEECCC TVAGSVKVACTEPHLWRAVTTIALGDQGDAYPGDRVVEVTTRDFCSKSVGAWLNYPVDYD CCCCEEEEEECCCHHHHHEEEEEECCCCCCCCCCEEEEEECHHHHHHHHHHHCCCCCCCC FGYTWFHQAEWDAGNRRSVCWAKTDQ CCEEEEEECCCCCCCCCEEEEEECCC >Mature Secondary Structure PLAERRRARLLALVLAVALAGVLVACGDKAAPAADEAAPDLGACRVLAPEDVAEPSNST CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCHHHCCCCCCC TPVECTEPHTAETYAVGQLPSTFDDVDYDDEGLGSWAYETCSKAFMDFLGADESLVMRTV CCEEECCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHH VSWAWFRPSEDAWADGARWYRCDVVGGGEQSREYVDLPTTAKGLLLGRPKDEWMVCADGP HHHHHCCCCCCCCCCCCEEEEEEEECCCCCCCEEECCCCCCCCEEEECCCCCEEEEECCC TVAGSVKVACTEPHLWRAVTTIALGDQGDAYPGDRVVEVTTRDFCSKSVGAWLNYPVDYD CCCCEEEEEECCCHHHHHEEEEEECCCCCCCCCCEEEEEECHHHHHHHHHHHCCCCCCCC FGYTWFHQAEWDAGNRRSVCWAKTDQ CCEEEEEECCCCCCCCCEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA