Click here to switch to the map view.

The map label for this gene is yjjW [H]

Identifier: 119716106

GI number: 119716106

Start: 1997845

End: 1998570

Strand: Direct

Name: yjjW [H]

Synonym: Noca_1874

Alternate gene names: 119716106

Gene position: 1997845-1998570 (Clockwise)

Preceding gene: 119716105

Following gene: 119716111

Centisome position: 40.07

GC content: 72.59

Gene sequence:

>726_bases
ATGAGATCGACGCCGGTCCGGCTCGCTGACGTCATCCCGTTCTCCTGGGTCGACGGACCGGGGAACCGGTTCGTCGTCTT
CGTCCAGGGCTGCTCGTTCGACTGCCTGGCCTGCCACAACCCCGAGACCATCGCGCCCTGCGGGCCGGCCAGCCGGGTGA
GCTCGGTCGGGGAGCTGCTCGAGCAGATCCGGGTCGCCGAGCCCTACCTGTCCGGAGTGACGGTCTCTGGCGGGGAGGCG
ACCGGCCAGTGGCGGTTCGTGCGCGACCTGTTCACCGAGGTGCGCGCGGACCCGCAGCTGGCTCGCCTGACGACGTACGT
CGACTCGAACGGGCACGCGCTCCCGCGGGTCTGGGACGAGCTGTTGCCGGTGGCCGACGGGTTCATGATCGACCTCAAGG
CCCTCGATCCCGAGGTGCACCGCCGGCTCACCGGACGCGGCAACGAGCTGGTGCTCGACTCGATCCGCTACCTGCACGGT
CAGGGCCGGCTGCACGAGGTGCGGCTGCTGCTGGTGCCCGGGTACAACGACAGCCCGGACCAGCTCGCCCGGACGGCGGC
GTGGCTCGCCGACCTCGACCCGCGCCTGCGGGTGGTGGTCATCGGCTTCCGCCGGCACGGCGTCCGCCCGGAGCACCAGC
ACCTCCCGGAGGCCACGCCGGAGCTGGTCGCCGACGCCCGGCGGGTGTTGGCCGAGGCCGGCCTCGGGGCGGTCGTCACC
GTCTGA

Upstream 100 bases:

>100_bases
AAGATCGAGCACGGCGCGCGGCACGACAGCACGTTCCTCGCTGCCGGCTCGGTCGCGCAGTCGCACGTCGACCGGAGAGT
GCCGAAGCGGATCGTCGCCC

Downstream 100 bases:

>100_bases
CGCGGCGACGCGCGATCCGCACTCAGCCGAAGGCGTGGGCGGGGGCCTCGCTCGGCCGCTCGCGGAGCCGGATGGTCGAC
TCCGCCCAGGAGATCTCCGC

Product: radical SAM domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 241; Mature: 241

Protein sequence:

>241_residues
MRSTPVRLADVIPFSWVDGPGNRFVVFVQGCSFDCLACHNPETIAPCGPASRVSSVGELLEQIRVAEPYLSGVTVSGGEA
TGQWRFVRDLFTEVRADPQLARLTTYVDSNGHALPRVWDELLPVADGFMIDLKALDPEVHRRLTGRGNELVLDSIRYLHG
QGRLHEVRLLLVPGYNDSPDQLARTAAWLADLDPRLRVVVIGFRRHGVRPEHQHLPEATPELVADARRVLAEAGLGAVVT
V

Sequences:

>Translated_241_residues
MRSTPVRLADVIPFSWVDGPGNRFVVFVQGCSFDCLACHNPETIAPCGPASRVSSVGELLEQIRVAEPYLSGVTVSGGEA
TGQWRFVRDLFTEVRADPQLARLTTYVDSNGHALPRVWDELLPVADGFMIDLKALDPEVHRRLTGRGNELVLDSIRYLHG
QGRLHEVRLLLVPGYNDSPDQLARTAAWLADLDPRLRVVVIGFRRHGVRPEHQHLPEATPELVADARRVLAEAGLGAVVT
V
>Mature_241_residues
MRSTPVRLADVIPFSWVDGPGNRFVVFVQGCSFDCLACHNPETIAPCGPASRVSSVGELLEQIRVAEPYLSGVTVSGGEA
TGQWRFVRDLFTEVRADPQLARLTTYVDSNGHALPRVWDELLPVADGFMIDLKALDPEVHRRLTGRGNELVLDSIRYLHG
QGRLHEVRLLLVPGYNDSPDQLARTAAWLADLDPRLRVVVIGFRRHGVRPEHQHLPEATPELVADARRVLAEAGLGAVVT
V

Specific function: Unknown

COG id: COG1180

COG function: function code O; Pyruvate-formate lyase-activating enzyme

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1790839, Length=278, Percent_Identity=38.8489208633094, Blast_Score=171, Evalue=3e-44,
Organism=Escherichia coli, GI1787130, Length=182, Percent_Identity=35.7142857142857, Blast_Score=107, Evalue=5e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR011352
- InterPro:   IPR001989
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 26549; Mature: 26549

Theoretical pI: Translated: 6.31; Mature: 6.31

Prosite motif: PS01087 RADICAL_ACTIVATING

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSTPVRLADVIPFSWVDGPGNRFVVFVQGCSFDCLACHNPETIAPCGPASRVSSVGELL
CCCCCCCHHHCCCEEEECCCCCEEEEEEECCCEEEEEECCCCCCCCCCCHHHHHHHHHHH
EQIRVAEPYLSGVTVSGGEATGQWRFVRDLFTEVRADPQLARLTTYVDSNGHALPRVWDE
HHHHHHCHHHCCEEECCCCCCCHHHHHHHHHHHHCCCCCHHHEEEEECCCCCCHHHHHHH
LLPVADGFMIDLKALDPEVHRRLTGRGNELVLDSIRYLHGQGRLHEVRLLLVPGYNDSPD
HHHHCCCEEEEEECCCHHHHHHHCCCCCEEHHHHHHHHHCCCCEEEEEEEEEECCCCCHH
QLARTAAWLADLDPRLRVVVIGFRRHGVRPEHQHLPEATPELVADARRVLAEAGLGAVVT
HHHHHHHHHHCCCCCEEEEEEEHHHCCCCCHHHCCCCCCHHHHHHHHHHHHHCCCCEEEE
V
C
>Mature Secondary Structure
MRSTPVRLADVIPFSWVDGPGNRFVVFVQGCSFDCLACHNPETIAPCGPASRVSSVGELL
CCCCCCCHHHCCCEEEECCCCCEEEEEEECCCEEEEEECCCCCCCCCCCHHHHHHHHHHH
EQIRVAEPYLSGVTVSGGEATGQWRFVRDLFTEVRADPQLARLTTYVDSNGHALPRVWDE
HHHHHHCHHHCCEEECCCCCCCHHHHHHHHHHHHCCCCCHHHEEEEECCCCCCHHHHHHH
LLPVADGFMIDLKALDPEVHRRLTGRGNELVLDSIRYLHGQGRLHEVRLLLVPGYNDSPD
HHHHCCCEEEEEECCCHHHHHHHCCCCCEEHHHHHHHHHCCCCEEEEEEEEEECCCCCHH
QLARTAAWLADLDPRLRVVVIGFRRHGVRPEHQHLPEATPELVADARRVLAEAGLGAVVT
HHHHHHHHHHCCCCCEEEEEEEHHHCCCCCHHHCCCCCCHHHHHHHHHHHHHCCCCEEEE
V
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]